MELO3C024535.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C024535.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionLysM domain-containing protein
Locationchr08: 8355878 .. 8356508 (+)
RNA-Seq ExpressionMELO3C024535.jh1
SyntenyMELO3C024535.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGAAGTGTTATATATACAATGGGGAAGAGATCACCATCACCACCACCACCACCACCACCATCCTCATCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAGTGAATTATTAGAGTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCACATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTATCAAATATCCCACCTTTCTCACACCTTAATTATTATTCATCTAATTCAATTATATTTTTCTTGGGTTATTATATCATTATATATATTGCTTCTTCTTTTGTTTCCGATAAGTTTTTGTAATGGATAATCTATGAACATGCGTATGTGTATCTTTTTAGTTAACAATTGTAATGGTGTGGAAAATTGAACCGTCCGTCCTTGAAACGATAATTTTATTTTTCTTTTTGACAATATAGGTGTAAAGAAGAATCAAACTTTTTAACTTTTTCGAGATTTATTCTATTTGCTTTATAATAATACTTATGCTTATCATGATTTA

mRNA sequence

ATAGAAGTGTTATATATACAATGGGGAAGAGATCACCATCACCACCACCACCACCACCACCATCCTCATCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAGTGAATTATTAGAGTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCACATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTATCAAATATCCCACCTTTCTCACACCTTAATTATTATTCATCTAATTCAATTATATTTTTCTTGGGTTATTATATCATTATATATATTGCTTCTTCTTTTGTTTCCGATAAGTTTTTGTAATGGATAATCTATGAACATGCGTATGTGTATCTTTTTAGTTAACAATTGTAATGGTGTGGAAAATTGAACCGTCCGTCCTTGAAACGATAATTTTATTTTTCTTTTTGACAATATAGGTGTAAAGAAGAATCAAACTTTTTAACTTTTTCGAGATTTATTCTATTTGCTTTATAATAATACTTATGCTTATCATGATTTA

Coding sequence (CDS)

ATGGGGAAGAGATCACCATCACCACCACCACCACCACCACCATCCTCATCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAGAGCAGTGAATTATTAGAGTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATTAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCACATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTATCAAATATCCCACCTTTCTCACACCTTAA

Protein sequence

MGKRSPSPPPPPPPSSSKAKVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPTFLTP
Homology
BLAST of MELO3C024535.jh1 vs. NCBI nr
Match: KAE8647420.1 (hypothetical protein Csa_003059 [Cucumis sativus])

HSP 1 Score: 186 bits (473), Expect = 4.43e-59
Identity = 95/106 (89.62%), Postives = 95/106 (89.62%), Query Frame = 0

Query: 1   MGKRSPSPPPPPPPSSSKAKVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQS 60
           MGKRS S       S SKAKVVSLVILVLSCLIWCCKSSELL YNCEEIYVVHEGETLQS
Sbjct: 1   MGKRSSSSSS---SSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQS 60

Query: 61  ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFIKYPTFLTP 106
           ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHF KYPTFLTP
Sbjct: 61  ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP 103

BLAST of MELO3C024535.jh1 vs. NCBI nr
Match: KAG6595189.1 (hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027207.1 hypothetical protein SDJN02_11218, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114 bits (284), Expect = 2.15e-30
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 0

Query: 15 SSSKAKVVSLVILVLSCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEEN 74
          SSS+ + + LV+++    +WCC S E+L   C+EIYVV EGETLQSISEKCGDPFI E N
Sbjct: 5  SSSRREFLVLVLVLSWWCVWCCNSQEVL-MGCDEIYVVREGETLQSISEKCGDPFIFEHN 64

Query: 75 PHINDPDDVFPGLVIKITPFHH 96
          PHIND DDVFPGLVIKITPF H
Sbjct: 65 PHINDVDDVFPGLVIKITPFLH 85

BLAST of MELO3C024535.jh1 vs. NCBI nr
Match: XP_022744694.1 (uncharacterized protein LOC111295462 [Durio zibethinus])

HSP 1 Score: 105 bits (262), Expect = 6.75e-27
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 25  VILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIV 84
           V+L+LSC   CC+ S   +Y              C+EIYVV EGETLQ+ISEKCGDPFIV
Sbjct: 24  VMLILSC---CCEESSGKDYRGKEVLVLQQKNKPCDEIYVVREGETLQTISEKCGDPFIV 83

Query: 85  EENPHINDPDDVFPGLVIKITPFHH 96
           EENPHI+DPDDVFPGLVIKITPF++
Sbjct: 84  EENPHIHDPDDVFPGLVIKITPFNN 105

BLAST of MELO3C024535.jh1 vs. NCBI nr
Match: XP_019179717.1 (PREDICTED: uncharacterized protein LOC109174930 [Ipomoea nil])

HSP 1 Score: 104 bits (259), Expect = 1.72e-26
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0

Query: 43 EYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 94
          E  CEEIYVV EGETLQ+ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
Sbjct: 48 ERRCEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 99

BLAST of MELO3C024535.jh1 vs. NCBI nr
Match: XP_010271716.1 (PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera])

HSP 1 Score: 104 bits (259), Expect = 2.04e-26
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 23  SLVILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVE 82
           SLV++VL  L+ CC SSE          ++   C+EIYVV EGETL +ISEKCGDPFIVE
Sbjct: 23  SLVLVVLL-LLGCCDSSESESLVRMNLRMISKPCDEIYVVEEGETLHTISEKCGDPFIVE 82

Query: 83  ENPHINDPDDVFPGLVIKITPF 94
           ENPHI+DPDDVFPGLVIKITPF
Sbjct: 83  ENPHIHDPDDVFPGLVIKITPF 103

BLAST of MELO3C024535.jh1 vs. ExPASy TrEMBL
Match: A0A6P5YVX7 (uncharacterized protein LOC111295462 OS=Durio zibethinus OX=66656 GN=LOC111295462 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 3.27e-27
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 0

Query: 25  VILVLSCLIWCCKSSELLEYN-------------CEEIYVVHEGETLQSISEKCGDPFIV 84
           V+L+LSC   CC+ S   +Y              C+EIYVV EGETLQ+ISEKCGDPFIV
Sbjct: 24  VMLILSC---CCEESSGKDYRGKEVLVLQQKNKPCDEIYVVREGETLQTISEKCGDPFIV 83

Query: 85  EENPHINDPDDVFPGLVIKITPFHH 96
           EENPHI+DPDDVFPGLVIKITPF++
Sbjct: 84  EENPHIHDPDDVFPGLVIKITPFNN 105

BLAST of MELO3C024535.jh1 vs. ExPASy TrEMBL
Match: A0A1U8AYB4 (uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 9.88e-27
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 23  SLVILVLSCLIWCCKSSE----------LLEYNCEEIYVVHEGETLQSISEKCGDPFIVE 82
           SLV++VL  L+ CC SSE          ++   C+EIYVV EGETL +ISEKCGDPFIVE
Sbjct: 23  SLVLVVLL-LLGCCDSSESESLVRMNLRMISKPCDEIYVVEEGETLHTISEKCGDPFIVE 82

Query: 83  ENPHINDPDDVFPGLVIKITPF 94
           ENPHI+DPDDVFPGLVIKITPF
Sbjct: 83  ENPHIHDPDDVFPGLVIKITPF 103

BLAST of MELO3C024535.jh1 vs. ExPASy TrEMBL
Match: A0A1R3IHT9 (LysM domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_12057 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.05e-26
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 0

Query: 25  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCG 84
           V+LVLSC    C+SS+  E+                   C+EIYVV EGETLQ+ISEKCG
Sbjct: 24  VMLVLSC----CESSDQREFKGGDDLQLKELIMMKNNKPCDEIYVVKEGETLQTISEKCG 83

Query: 85  DPFIVEENPHINDPDDVFPGLVIKITPFHH 96
           DP+IVEENPHI+DPDDVFPGLVIKITPFH+
Sbjct: 84  DPYIVEENPHIHDPDDVFPGLVIKITPFHN 109

BLAST of MELO3C024535.jh1 vs. ExPASy TrEMBL
Match: A0A1R3HD93 (LysM domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29778 PE=4 SV=1)

HSP 1 Score: 104 bits (259), Expect = 1.05e-26
Identity = 55/90 (61.11%), Postives = 64/90 (71.11%), Query Frame = 0

Query: 25  VILVLSCLIWCCKSSELLEYN------------------CEEIYVVHEGETLQSISEKCG 84
           V+LVLSC    C+SS+  E+                   C+EIYVV EGETLQ+ISEKCG
Sbjct: 24  VMLVLSC----CESSDQREFKGGDDLQLKELIMMKNNKPCDEIYVVKEGETLQTISEKCG 83

Query: 85  DPFIVEENPHINDPDDVFPGLVIKITPFHH 96
           DP+IVEENPHI+DPDDVFPGLVIKITPFH+
Sbjct: 84  DPYIVEENPHIHDPDDVFPGLVIKITPFHN 109

BLAST of MELO3C024535.jh1 vs. ExPASy TrEMBL
Match: A0A6P6SRT1 (uncharacterized protein LOC113694046 OS=Coffea arabica OX=13443 GN=LOC113694046 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 2.05e-26
Identity = 56/100 (56.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query: 14  PSSSKAKVVS---LVILVLSCLIWCCKSSE----------------LLEYNCEEIYVVHE 73
           PS++ A+ VS    + L L  ++ CC+S+E                LLE  C+EIYVV E
Sbjct: 7   PSTALAETVSWYCALFLALMLVLSCCESTEEQFEVQQQKQQILSSLLLEQPCDEIYVVRE 66

Query: 74  GETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 94
           GETL +ISEKCGDP+IVE+NPHI+DPDDVFPGLVIKITPF
Sbjct: 67  GETLHTISEKCGDPYIVEQNPHIHDPDDVFPGLVIKITPF 106

BLAST of MELO3C024535.jh1 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-19
Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 0

Query: 30  SCLIWCCKSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVI 89
           +C +W  +  +++E  CEE+YVV EG+TL SISEKCGDPFIVE NPHI+DPDDVFPGL+I
Sbjct: 45  NCEVW--RGKQMMERPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLI 104

Query: 90  KI 92
           K+
Sbjct: 105 KL 104

BLAST of MELO3C024535.jh1 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 37 KSSELLEYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH 96
          + S+     CEEIY+V EGETL +I +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Sbjct: 39 RGSQFSTKPCEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPFY 97

BLAST of MELO3C024535.jh1 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 84.3 bits (207), Expect = 6.3e-17
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 46  CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP 94
           C+EIY V EGETLQ+ISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647420.14.43e-5989.62hypothetical protein Csa_003059 [Cucumis sativus][more]
KAG6595189.12.15e-3068.29hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022744694.16.75e-2763.53uncharacterized protein LOC111295462 [Durio zibethinus][more]
XP_019179717.11.72e-2692.31PREDICTED: uncharacterized protein LOC109174930 [Ipomoea nil][more]
XP_010271716.12.04e-2667.07PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6P5YVX73.27e-2763.53uncharacterized protein LOC111295462 OS=Durio zibethinus OX=66656 GN=LOC11129546... [more]
A0A1U8AYB49.88e-2767.07uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716... [more]
A0A1R3IHT91.05e-2661.11LysM domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_1205... [more]
A0A1R3HD931.05e-2661.11LysM domain-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_29778 PE... [more]
A0A6P6SRT12.05e-2656.00uncharacterized protein LOC113694046 OS=Coffea arabica OX=13443 GN=LOC113694046 ... [more]
Match NameE-valueIdentityDescription
AT4G25433.11.0e-1966.13peptidoglycan-binding LysM domain-containing protein [more]
AT5G62150.12.3e-1967.80peptidoglycan-binding LysM domain-containing protein [more]
AT3G52790.16.3e-1777.08peptidoglycan-binding LysM domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainPFAMPF01476LysMcoord: 50..92
e-value: 3.3E-5
score: 23.8
IPR018392LysM domainCDDcd00118LysMcoord: 49..91
e-value: 1.78043E-6
score: 39.7761
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 41..96
e-value: 1.1E-8
score: 36.5
NoneNo IPR availablePANTHERPTHR33648:SF15EMBRYO SAC 1coord: 24..95
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 24..95
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..31
score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024535.jh1.t1MELO3C024535.jh1.t1mRNA