MELO3C024487 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024487
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Expansin
Location	chr08: 9104068 .. 9104229 (-)
RNA-Seq Expression	MELO3C024487
Synteny	MELO3C024487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGGTAT

mRNA sequence

ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGGTAT

Coding sequence (CDS)

ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGGTAT

Protein sequence

MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRRY

Homology

[Close]

BLAST of MELO3C024487 vs. NCBI nr
Match: XP_008462508.1 (PREDICTED: expansin-A9-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 3.9e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Sbjct: 126 MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRR 178

[Close]

BLAST of MELO3C024487 vs. NCBI nr
Match: KAE8647412.1 (hypothetical protein Csa_003212 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Sbjct: 126 VVTGTNHCPPNHNLPNDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRR 178

[Close]

BLAST of MELO3C024487 vs. NCBI nr
Match: XP_004143366.1 (expansin-A3 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 1.6e-23
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Sbjct: 126 VVTGTNHCPPNHNLPNDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRR 178

[Close]

BLAST of MELO3C024487 vs. NCBI nr
Match: KAG7034536.1 (Expansin-A9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 7.6e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPNYN   DNGGWCNPPLEHFDIAKPVF N+A++KAG++P+TYRR
Sbjct: 113 VVTGTNHCPPNYNAANDNGGWCNPPLEHFDIAKPVFANLADYKAGVIPITYRR 165

[Close]

BLAST of MELO3C024487 vs. NCBI nr
Match: KAG6604386.1 (Expansin-A32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.8 bits (273), Expect = 7.6e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPNYN   DNGGWCNPPLEHFDIAKPVF N+A++KAG++P+TYRR
Sbjct: 131 VVTGTNHCPPNYNAANDNGGWCNPPLEHFDIAKPVFANLADYKAGVIPITYRR 183

[Close]

BLAST of MELO3C024487 vs. ExPASy Swiss-Prot
Match: Q852A1 (Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.7e-20
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPNY LP DNGGWCNPP  HFD+A P+FL+IAE++AGIVPV+YRR
Sbjct: 110 LITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRR 162

[Close]

BLAST of MELO3C024487 vs. ExPASy Swiss-Prot
Match: Q9LZ99 (Expansin-A9 OS=Arabidopsis thaliana OX=3702 GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-19
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPN+N   DNGGWCNPP EHFD+A P+FL+IA++KAGIVPV+YRR
Sbjct: 104 LITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156

[Close]

BLAST of MELO3C024487 vs. ExPASy Swiss-Prot
Match: O48818 (Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.4e-19
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPN   P DNGGWCNPP EHFD+A PVFL IA+++AGIVPV+YRR
Sbjct: 103 LITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155

[Close]

BLAST of MELO3C024487 vs. ExPASy Swiss-Prot
Match: A2Y5R6 (Expansin-A4 OS=Oryza sativa subsp. indica OX=39946 GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-18
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TN CPPNY LP D+GGWCNPP  HFD+A+P FL+IA+++AGIVPV++RR
Sbjct: 95  VTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146

[Close]

BLAST of MELO3C024487 vs. ExPASy Swiss-Prot
Match: Q0DHB7 (Expansin-A4 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-18
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TN CPPNY LP D+GGWCNPP  HFD+A+P FL+IA+++AGIVPV++RR
Sbjct: 95  VTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146

[Close]

BLAST of MELO3C024487 vs. ExPASy TrEMBL
Match: A0A1S3CH49 (Expansin OS=Cucumis melo OX=3656 GN=LOC103500844 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.9e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Sbjct: 126 MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRR 178

[Close]

BLAST of MELO3C024487 vs. ExPASy TrEMBL
Match: A0A0A0KIG7 (Expansin OS=Cucumis sativus OX=3659 GN=Csa_6G448160 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.9e-24
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Sbjct: 126 VVTGTNHCPPNHNLPNDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRR 178

[Close]

BLAST of MELO3C024487 vs. ExPASy TrEMBL
Match: A0A6J1ED76 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111433099 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPNYN   DNGGWCNPPLEHFDIAKPVF N+A++KAG++P+TYRR
Sbjct: 131 VVTGTNHCPPNYNAANDNGGWCNPPLEHFDIAKPVFANLADYKAGVIPITYRR 183

[Close]

BLAST of MELO3C024487 vs. ExPASy TrEMBL
Match: A0A2P6RB60 (Expansin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0470931 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TNHCPPNYNLP DNGGWCN P EHFDIAKPVFLNIAE+KAGIVP+ YRR
Sbjct: 106 VTATNHCPPNYNLPSDNGGWCNAPREHFDIAKPVFLNIAEYKAGIVPIIYRR 157

[Close]

BLAST of MELO3C024487 vs. ExPASy TrEMBL
Match: A0A6J1ISW4 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111478120 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-20
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPNYN   DNGGWCNPP EHFDIAKPVF N+A++KAG++P+TYRR
Sbjct: 131 VVTGTNHCPPNYNAANDNGGWCNPPHEHFDIAKPVFANLADYKAGVIPITYRR 183

[Close]

BLAST of MELO3C024487 vs. TAIR 10
Match: AT5G02260.1 (expansin A9 )

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-20
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPN+N   DNGGWCNPP EHFD+A P+FL+IA++KAGIVPV+YRR
Sbjct: 104 LITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156

[Close]

BLAST of MELO3C024487 vs. TAIR 10
Match: AT2G39700.1 (expansin A4 )

HSP 1 Score: 93.6 bits (231), Expect = 5.2e-20
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPN   P DNGGWCNPP EHFD+A PVFL IA+++AGIVPV+YRR
Sbjct: 103 LITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155

[Close]

BLAST of MELO3C024487 vs. TAIR 10
Match: AT1G26770.1 (expansin A10 )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VT TN CPPN  L  +NGGWCNPPLEHFD+A+PVF  IA+++AGIVPV+YRR
Sbjct: 96  VVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRR 148

[Close]

BLAST of MELO3C024487 vs. TAIR 10
Match: AT1G26770.2 (expansin A10 )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VT TN CPPN  L  +NGGWCNPPLEHFD+A+PVF  IA+++AGIVPV+YRR
Sbjct: 106 VVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRR 158

[Close]

BLAST of MELO3C024487 vs. TAIR 10
Match: AT3G55500.1 (expansin A16 )

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-19
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TN CPPN   P DNGGWCNPP  HFD+A PVFL IAE++AGIVP++YRR
Sbjct: 107 VTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRR 158

The following BLAST results are available for this feature:

BLAST of MELO3C024487 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462508.1	3.9e-25	98.11	PREDICTED: expansin-A9-like [Cucumis melo]	[more]
KAE8647412.1	1.6e-23	92.45	hypothetical protein Csa_003212 [Cucumis sativus]	[more]
XP_004143366.1	1.6e-23	92.45	expansin-A3 [Cucumis sativus]	[more]
KAG7034536.1	7.6e-21	79.25	Expansin-A9, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6604386.1	7.6e-21	79.25	Expansin-A32, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MELO3C024487 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q852A1	6.7e-20	71.70	Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1	[more]
Q9LZ99	2.5e-19	69.81	Expansin-A9 OS=Arabidopsis thaliana OX=3702 GN=EXPA9 PE=2 SV=1	[more]
O48818	7.4e-19	69.81	Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1	[more]
A2Y5R6	1.6e-18	69.23	Expansin-A4 OS=Oryza sativa subsp. indica OX=39946 GN=EXPA4 PE=2 SV=1	[more]
Q0DHB7	1.6e-18	69.23	Expansin-A4 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA4 PE=2 SV=1	[more]

BLAST of MELO3C024487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CH49	1.9e-25	98.11	Expansin OS=Cucumis melo OX=3656 GN=LOC103500844 PE=3 SV=1	[more]
A0A0A0KIG7	7.9e-24	92.45	Expansin OS=Cucumis sativus OX=3659 GN=Csa_6G448160 PE=3 SV=1	[more]
A0A6J1ED76	3.7e-21	79.25	Expansin OS=Cucurbita moschata OX=3662 GN=LOC111433099 PE=3 SV=1	[more]
A0A2P6RB60	1.1e-20	86.54	Expansin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0470931 PE=3 SV=1	[more]
A0A6J1ISW4	2.4e-20	77.36	Expansin OS=Cucurbita maxima OX=3661 GN=LOC111478120 PE=3 SV=1	[more]

BLAST of MELO3C024487 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02260.1	1.8e-20	69.81	expansin A9	[more]
AT2G39700.1	5.2e-20	69.81	expansin A4	[more]
AT1G26770.1	2.0e-19	69.81	expansin A10	[more]
AT1G26770.2	2.0e-19	69.81	expansin A10	[more]
AT3G55500.1	2.0e-19	71.15	expansin A16	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 19..36 score: 71.48 coord: 36..49 score: 65.24
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 1..51 e-value: 6.7E-11 score: 52.2
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 1..54 score: 10.491126
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 2..51 e-value: 5.4E-7 score: 29.8
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 1..54 e-value: 4.6E-6 score: 28.8
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 2..53
None	No IPR available	PANTHER	PTHR31867:SF113	EXPANSIN-A32	coord: 1..53
None	No IPR available	PANTHER	PTHR31867	EXPANSIN-A15	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024487.1	MELO3C024487.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization