MELO3C024459.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C024459.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Transcription factor, TCP
Location	chr08: 9070323 .. 9071291 (+)
RNA-Seq Expression	MELO3C024459.jh1
Synteny	MELO3C024459.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAAATGGATCGGGCCCACTTGTTGGGGGAAATGGGCCCAAAGATGGAGTGGGGCCAAGAAGAAAGAGGACCCCACCTCACAACCGATCCATGCGTCCCACTCCCTCCGTGTCCGACTCCGTTCCGTGGGGAGGGAGACTGTGTATGTGTGTGCGCACTTCTTTTTTTATTCTTAAATTAGTTCTTCCTCATCGGTTTCTCCCTCCCTCTCTCTATTCATTCCTCAGCTGTCAGCTCTCAGCTCTCATCTCAAACCCTAAAATCTTCCTCCGATCAAAACCCTCGAAACTACCTTCTCTTCTCCCCTTTCACTCCTTCCTCAACACAGTTGTTTCAACTATGGGATCGGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCGTCTCCGGCCACCATCTCGCGCCAATCCCTCCTCCCTCGCAAGTCAAACACCTCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGGCGCGTCCGTATGCCCGCCCTCTGTGCTGCCCGCATCTTTCAGTTAACGCGCGAGCTCGGACATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCAATCTCCACCGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGATTCAGCCAGTGACGGTGGGCGGCAGTGGGCAGGGGATGTTCTCTATGCCACCACCGAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTATCGCCACATGCCGTTCACGGCGCTGTTGTTGCAGCCGTCGACGGGGGAGGAGACGGAGGAGAGACAGGAGGAGGAGGTTTTCAGAGAATAA

mRNA sequence

ATGGGAAGAAATGGATCGGGCCCACTTGTTGGGGGAAATGGGCCCAAAGATGGAGTGGGGCCAAGAAGAAAGAGGACCCCACCTCACAACCGATCCATGCGTCCCACTCCCTCCGTGTCCGACTCCGTTCCGTGGGGAGGGAGACTGTGTATGTGTGTGCGCACTTCTTTTTTTATTCTTAAATTAGTTCTTCCTCATCGGTTTCTCCCTCCCTCTCTCTATTCATTCCTCAGCTGTCAGCTCTCAGCTCTCATCTCAAACCCTAAAATCTTCCTCCGATCAAAACCCTCGAAACTACCTTCTCTTCTCCCCTTTCACTCCTTCCTCAACACAGTTGTTTCAACTATGGGATCGGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCGTCTCCGGCCACCATCTCGCGCCAATCCCTCCTCCCTCGCAAGTCAAACACCTCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGGCGCGTCCGTATGCCCGCCCTCTGTGCTGCCCGCATCTTTCAGTTAACGCGCGAGCTCGGACATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCAATCTCCACCGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGATTCAGCCAGTGACGGTGGGCGGCAGTGGGCAGGGGATGTTCTCTATGCCACCACCGAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTATCGCCACATGCCGTTCACGGCGCTGTTGTTGCAGCCGTCGACGGGGGAGGAGACGGAGGAGAGACAGGAGGAGGAGGTTTTCAGAGAATAA

Coding sequence (CDS)

ATGGGAAGAAATGGATCGGGCCCACTTGTTGGGGGAAATGGGCCCAAAGATGGAGTGGGGCCAAGAAGAAAGAGGACCCCACCTCACAACCGATCCATGCGTCCCACTCCCTCCGTGTCCGACTCCGTTCCGTGGGGAGGGAGACTGTGTATGTGTGTGCGCACTTCTTTTTTTATTCTTAAATTAGTTCTTCCTCATCGGTTTCTCCCTCCCTCTCTCTATTCATTCCTCAGCTGTCAGCTCTCAGCTCTCATCTCAAACCCTAAAATCTTCCTCCGATCAAAACCCTCGAAACTACCTTCTCTTCTCCCCTTTCACTCCTTCCTCAACACAGTTGTTTCAACTATGGGATCGGACATCGTTCTACACAAATTCCCCTCTTCTTCCGACCCCCATTCTCAGCCCCCCACCGCTTCTCACTCTGTCGTCGGCAGTAACTCGTCTCCGGCCACCATCTCGCGCCAATCCCTCCTCCCTCGCAAGTCAAACACCTCCTTATCCTCCTCTTCTTCCAAGGATCGCCACATCAAGGTCAACGGAAGAGGGCGGCGCGTCCGTATGCCCGCCCTCTGTGCTGCCCGCATCTTTCAGTTAACGCGCGAGCTCGGACATCGTTCCGAGGGTGAAACCATCGAGTGGCTTCTCCGTCAGGCTGAACCTTCCATCATTGCCGCCACGGGTACTGGTACAGTTCCTTCTGGTCCAATCTCCACCGTCTCCTCTGCTATGGCTTCTTCCGGTCGGTCTGTTTCTTGTAGGATTCAGCCAGTGACGGTGGGCGGCAGTGGGCAGGGGATGTTCTCTATGCCACCACCGAGTTGCCGTCTGGATTTATGCCAGCCGGTCGGGATGGAGTACTCTGCTGCTGGGAATGATTATCGCCACATGCCGTTCACGGCGCTGTTGTTGCAGCCGTCGACGGGGGAGGAGACGGAGGAGAGACAGGAGGAGGAGGTTTTCAGAGAATAA

Protein sequence

MGRNGSGPLVGGNGPKDGVGPRRKRTPPHNRSMRPTPSVSDSVPWGGRLCMCVRTSFFILKLVLPHRFLPPSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTALLLQPSTGEETEERQEEEVFRE

Homology

[Close]

BLAST of MELO3C024459.jh1 vs. NCBI nr
Match: XP_008462463.1 (PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo])

HSP 1 Score: 624 bits (1608), Expect = 6.02e-225
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MGRNGSGPLVGGNGPKDGVGPRRKRTPPHNRSMRPTPSVSDSVPWGGRLCMCVRTSFFIL 60
           MGRNGSGPLVGGNGPKDGVGPRRKRTPPHNRSMRPTPSVSDSVPWGGRLCMCVRTSFFIL
Sbjct: 1   MGRNGSGPLVGGNGPKDGVGPRRKRTPPHNRSMRPTPSVSDSVPWGGRLCMCVRTSFFIL 60

Query: 61  KLVLPHRFLPPSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDI 120
           KLVLPHRFLPPSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDI
Sbjct: 61  KLVLPHRFLPPSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDI 120

Query: 121 VLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNG 180
           VLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNG
Sbjct: 121 VLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNG 180

Query: 181 RGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVS 240
           RGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVS
Sbjct: 181 RGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVS 240

Query: 241 SAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTA 300
           SAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTA
Sbjct: 241 SAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTA 300

Query: 301 LLLQPSTGEETEERQEEEVFRE 322
           LLLQPSTGEETEERQEEEVFRE
Sbjct: 301 LLLQPSTGEETEERQEEEVFRE 322

[Close]

BLAST of MELO3C024459.jh1 vs. NCBI nr
Match: TYK07305.1 (transcription factor TCP11-like [Cucumis melo var. makuwa])

HSP 1 Score: 392 bits (1006), Expect = 4.55e-135
Identity = 205/207 (99.03%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175
           MGSDIVLH FPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH
Sbjct: 1   MGSDIVLHNFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 60

Query: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295
           ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFS+PPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSLPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 296 MPFTALLLQPSTGEETEERQEEEVFRE 322
           MPFTALLLQPSTGEETEERQEEEVFRE
Sbjct: 181 MPFTALLLQPSTGEETEERQEEEVFRE 207

[Close]

BLAST of MELO3C024459.jh1 vs. NCBI nr
Match: XP_004143267.1 (transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein Csa_003031 [Cucumis sativus])

HSP 1 Score: 386 bits (992), Expect = 6.14e-133
Identity = 201/207 (97.10%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSP TI+RQSLLPRKSNT LSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295
           ISTVSSAMASSGRSVSCR+QPVTVGGSGQGMF+MPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 296 MPFTALLLQPSTGEETEERQEEEVFRE 322
           MPFTALLLQPST EETEERQEEEVFRE
Sbjct: 181 MPFTALLLQPSTAEETEERQEEEVFRE 207

[Close]

BLAST of MELO3C024459.jh1 vs. NCBI nr
Match: XP_038882900.1 (transcription factor TCP11 [Benincasa hispida])

HSP 1 Score: 331 bits (849), Expect = 2.98e-111
Identity = 175/207 (84.54%), Postives = 190/207 (91.79%), Query Frame = 0


Query: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175
           MGS+IVLHKFPS+SD +SQP TASHSVVGSNSS A I+ Q+++PRKS TSLSS   +DRH
Sbjct: 1   MGSEIVLHKFPSTSDHNSQP-TASHSVVGSNSSLANITPQAVVPRKSTTSLSS---RDRH 60

Query: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235
            KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ P
Sbjct: 61  TKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAAP 120

Query: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295
           IST+S AMASS RS+SCR+QP+TVGG GQGMF+MPPPSCRLDLCQPVGMEYSA GNDYRH
Sbjct: 121 ISTLSPAMASSARSISCRVQPLTVGGGGQGMFAMPPPSCRLDLCQPVGMEYSAVGNDYRH 180

Query: 296 MPFTALLLQPSTGEETEERQEEEVFRE 322
           MPFTALLLQPST EE EERQEEEVFRE
Sbjct: 181 MPFTALLLQPSTAEEAEERQEEEVFRE 203

[Close]

BLAST of MELO3C024459.jh1 vs. NCBI nr
Match: XP_023543697.1 (transcription factor TCP11-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324 bits (831), Expect = 1.93e-108
Identity = 170/208 (81.73%), Postives = 186/208 (89.42%), Query Frame = 0


Query: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSS-KDR 175
           MGS+I LHKFPSSSD HSQP  ASHSVV SN+SP  +++QS++PRKS  SLSSSSS +DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 176 HIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSG 235
           H KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ 
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 236 PISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYR 295
           PIST+S AMASSG SVSCR+Q V V    QGMF+MPPPSCRLDLCQPVG++YSAAGNDYR
Sbjct: 121 PISTISPAMASSGPSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYR 180

Query: 296 HMPFTALLLQPSTGEETEERQEEEVFRE 322
           HMPFTALLLQPST +E EERQEEEVFRE
Sbjct: 181 HMPFTALLLQPSTADEAEERQEEEVFRE 208

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy Swiss-Prot
Match: Q9SJK7 (Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.7e-34
Identity = 89/153 (58.17%), Postives = 100/153 (65.36%), Query Frame = 0


Query: 168 SSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATG 227
           S+ +KDRH KVNGR RRV MPAL AARIFQLTRELGH++EGETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 228 TGTVPSGPISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYS 287
            GT     IS      A    S S    P T   + Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 288 AAGNDYRHMPFTALLLQP--STGEETEERQEEE 319
              N Y HMPFTA+LL+P  +T E   E  EEE
Sbjct: 160 V--NGYSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy Swiss-Prot
Match: Q9C518 (Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.5e-26
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 131 PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL 190
           P S PP  S     S+++ AT +++              S+KDRH KV+GRGRR+RMPAL
Sbjct: 34  PRSTPPEDSTLATTSSTATATTTKR--------------STKDRHTKVDGRGRRIRMPAL 93

Query: 191 CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 250
           CAAR+FQLTRELGH+S+GETIEWLL+QAEP+I+AATGTGT+P+   ST+S ++ SSG ++
Sbjct: 94  CAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSSGSTL 139

Query: 251 S 252
           S
Sbjct: 154 S 139

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.6e-26
Identity = 66/126 (52.38%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 126 PSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRV 185
           P S    SQP T    ++ +    A ++ +          L  +S+KDRH KV+GRGRR+
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQEESAVVAAK-------KPPLKRASTKDRHTKVDGRGRRI 138

Query: 186 RMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMAS 245
           RMPALCAAR+FQLTRELGH+S+GETIEWLL+QAEPS+IAATGTGT+P+   ++++ ++ S
Sbjct: 139 RMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRS 196

Query: 246 SGRSVS 252
           SG S+S
Sbjct: 199 SGSSMS 196

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy Swiss-Prot
Match: Q9LQF0 (Transcription factor TCP23 OS=Arabidopsis thaliana OX=3702 GN=TCP23 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.7e-25
Identity = 64/120 (53.33%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 138 ASHSVVGSNSSPATISRQSLLPRKSNTSLSSSS------SKDRHIKVNGRGRRVRMPALC 197
           ++H V        ++S  +  P  + T+++++       SKDRHIKV+GRGRR+RMPA+C
Sbjct: 16  SAHLVPSMGPISGSVSLTTTAPNSTTTTVTAAKTPAKRPSKDRHIKVDGRGRRIRMPAIC 75

Query: 198 AARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVS 252
           AAR+FQLTREL H+S+GETIEWLL+QAEP+IIAATGTGT+P+  IST++ ++ SSG ++S
Sbjct: 76  AARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPAN-ISTLNISLRSSGSTLS 134

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy Swiss-Prot
Match: Q53PH2 (Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-24
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 0


Query: 171 SKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGT 230
           +KDRH KV GRGRR+RMPALCAAR+FQLTRELGH+++GETIEWLL+QAEP+I+AATGTGT
Sbjct: 152 TKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGT 211

Query: 231 VPSGPISTVSSAMASSGRSVSCRIQP 257
           +P+   S   S  +++  S S R  P
Sbjct: 212 IPANFSSLAVSLRSAASHSSSPRAAP 237

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CGZ3 (uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=4 SV=1)

HSP 1 Score: 624 bits (1608), Expect = 2.91e-225
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0


Query: 1   MGRNGSGPLVGGNGPKDGVGPRRKRTPPHNRSMRPTPSVSDSVPWGGRLCMCVRTSFFIL 60
           MGRNGSGPLVGGNGPKDGVGPRRKRTPPHNRSMRPTPSVSDSVPWGGRLCMCVRTSFFIL
Sbjct: 1   MGRNGSGPLVGGNGPKDGVGPRRKRTPPHNRSMRPTPSVSDSVPWGGRLCMCVRTSFFIL 60

Query: 61  KLVLPHRFLPPSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDI 120
           KLVLPHRFLPPSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDI
Sbjct: 61  KLVLPHRFLPPSLYSFLSCQLSALISNPKIFLRSKPSKLPSLLPFHSFLNTVVSTMGSDI 120

Query: 121 VLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNG 180
           VLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNG
Sbjct: 121 VLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNG 180

Query: 181 RGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVS 240
           RGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVS
Sbjct: 181 RGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVS 240

Query: 241 SAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTA 300
           SAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTA
Sbjct: 241 SAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRHMPFTA 300

Query: 301 LLLQPSTGEETEERQEEEVFRE 322
           LLLQPSTGEETEERQEEEVFRE
Sbjct: 301 LLLQPSTGEETEERQEEEVFRE 322

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C791 (Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00190 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 2.20e-135
Identity = 205/207 (99.03%), Postives = 206/207 (99.52%), Query Frame = 0


Query: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175
           MGSDIVLH FPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH
Sbjct: 1   MGSDIVLHNFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 60

Query: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295
           ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFS+PPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSLPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 296 MPFTALLLQPSTGEETEERQEEEVFRE 322
           MPFTALLLQPSTGEETEERQEEEVFRE
Sbjct: 181 MPFTALLLQPSTGEETEERQEEEVFRE 207

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KH86 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV=1)

HSP 1 Score: 382 bits (981), Expect = 2.66e-131
Identity = 198/205 (96.59%), Postives = 202/205 (98.54%), Query Frame = 0


Query: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRH 175
           MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSP TI+RQSLLPRKSNT LSSSSSKDRH
Sbjct: 1   MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPVTITRQSLLPRKSNTPLSSSSSKDRH 60

Query: 176 IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 235
           IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP
Sbjct: 61  IKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGP 120

Query: 236 ISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYRH 295
           ISTVSSAMASSGRSVSCR+QPVTVGGSGQGMF+MPPPSCRLDLCQPVGMEYSAAGNDYRH
Sbjct: 121 ISTVSSAMASSGRSVSCRVQPVTVGGSGQGMFAMPPPSCRLDLCQPVGMEYSAAGNDYRH 180

Query: 296 MPFTALLLQPSTGEETEERQEEEVF 320
           MPFTALLLQPST EETEERQEEE+F
Sbjct: 181 MPFTALLLQPSTAEETEERQEEELF 205

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EK07 (transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE=4 SV=1)

HSP 1 Score: 322 bits (825), Expect = 7.61e-108
Identity = 169/208 (81.25%), Postives = 185/208 (88.94%), Query Frame = 0


Query: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSS-KDR 175
           MGS+I LHKFPSSSD HSQP  ASHSVV SN+SP  +++QS++PRKS  SLSSSSS +DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQPTAASHSVVRSNASPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 176 HIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSG 235
           H KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ 
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 236 PISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYR 295
           PIST+S AMASS  SVSCR+Q V V    QGMF+MPPPSCRLDLCQPVG++YSAAGNDYR
Sbjct: 121 PISTISPAMASSALSVSCRVQSVGVAADEQGMFAMPPPSCRLDLCQPVGLDYSAAGNDYR 180

Query: 296 HMPFTALLLQPSTGEETEERQEEEVFRE 322
           HMPFTALLLQPST +E EERQEEEVFRE
Sbjct: 181 HMPFTALLLQPSTADEAEERQEEEVFRE 208

[Close]

BLAST of MELO3C024459.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IR93 (transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4 SV=1)

HSP 1 Score: 305 bits (780), Expect = 4.84e-101
Identity = 164/208 (78.85%), Postives = 181/208 (87.02%), Query Frame = 0


Query: 116 MGSDIVLHKFPSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSS-KDR 175
           MGS+I LHKFPSSSD HSQ   ASHSVV +NSSP  +++QS++PRKS  SLSSSSS +DR
Sbjct: 1   MGSEIALHKFPSSSDHHSQSTAASHSVVRNNSSPTNVTQQSVVPRKSTASLSSSSSSRDR 60

Query: 176 HIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSG 235
           H KVNGRGRRVRMPALCAARIFQLTRELGHRS+GETIEWLLRQAEPSIIAATGTGTVP+ 
Sbjct: 61  HTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPAA 120

Query: 236 PISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYSAAGNDYR 295
           PIST++ AMASS  SVSCR+Q V V    QGMF+MP  SCRLDLCQPVG++YSAAGNDYR
Sbjct: 121 PISTITPAMASSAPSVSCRVQSVGVAADEQGMFAMP--SCRLDLCQPVGLDYSAAGNDYR 180

Query: 296 HMPFTALLLQPSTGEETEERQEEEVFRE 322
           HMPFTALLLQPST +E EERQE EVFRE
Sbjct: 181 HMPFTALLLQPSTADEAEERQEGEVFRE 206

[Close]

BLAST of MELO3C024459.jh1 vs. TAIR 10
Match: AT2G37000.1 (TCP family transcription factor )

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-35
Identity = 89/153 (58.17%), Postives = 100/153 (65.36%), Query Frame = 0


Query: 168 SSSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATG 227
           S+ +KDRH KVNGR RRV MPAL AARIFQLTRELGH++EGETIEWLL QAEPSIIAATG
Sbjct: 40  SARTKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAEPSIIAATG 99

Query: 228 TGTVPSGPISTVSSAMASSGRSVSCRIQPVTVGGSGQGMFSMPPPSCRLDLCQPVGMEYS 287
            GT     IS      A    S S    P T   + Q       PSCRLDLCQP+G++Y 
Sbjct: 100 YGT---KLISNWVDVAADDSSSSSSMTSPQTQTQTPQS------PSCRLDLCQPIGIQYP 159

Query: 288 AAGNDYRHMPFTALLLQP--STGEETEERQEEE 319
              N Y HMPFTA+LL+P  +T E   E  EEE
Sbjct: 160 V--NGYSHMPFTAMLLEPMTTTAESEVEIAEEE 181

[Close]

BLAST of MELO3C024459.jh1 vs. TAIR 10
Match: AT1G58100.1 (TCP family transcription factor )

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-27
Identity = 67/121 (55.37%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 131 PHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRVRMPAL 190
           P S PP  S     S+++ AT +++              S+KDRH KV+GRGRR+RMPAL
Sbjct: 34  PRSTPPEDSTLATTSSTATATTTKR--------------STKDRHTKVDGRGRRIRMPAL 93

Query: 191 CAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSV 250
           CAAR+FQLTRELGH+S+GETIEWLL+QAEP+I+AATGTGT+P+   ST+S ++ SSG ++
Sbjct: 94  CAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSSGSTL 139

Query: 251 S 252
           S
Sbjct: 154 S 139

[Close]

BLAST of MELO3C024459.jh1 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 120.9 bits (302), Expect = 1.8e-27
Identity = 66/126 (52.38%), Postives = 90/126 (71.43%), Query Frame = 0


Query: 126 PSSSDPHSQPPTASHSVVGSNSSPATISRQSLLPRKSNTSLSSSSSKDRHIKVNGRGRRV 185
           P S    SQP T    ++ +    A ++ +          L  +S+KDRH KV+GRGRR+
Sbjct: 79  PQSQSQKSQPQTTQKELLQTQEESAVVAAK-------KPPLKRASTKDRHTKVDGRGRRI 138

Query: 186 RMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMAS 245
           RMPALCAAR+FQLTRELGH+S+GETIEWLL+QAEPS+IAATGTGT+P+   ++++ ++ S
Sbjct: 139 RMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRS 196

Query: 246 SGRSVS 252
           SG S+S
Sbjct: 199 SGSSMS 196

[Close]

BLAST of MELO3C024459.jh1 vs. TAIR 10
Match: AT1G35560.1 (TCP family transcription factor )

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-26
Identity = 64/120 (53.33%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 138 ASHSVVGSNSSPATISRQSLLPRKSNTSLSSSS------SKDRHIKVNGRGRRVRMPALC 197
           ++H V        ++S  +  P  + T+++++       SKDRHIKV+GRGRR+RMPA+C
Sbjct: 16  SAHLVPSMGPISGSVSLTTTAPNSTTTTVTAAKTPAKRPSKDRHIKVDGRGRRIRMPAIC 75

Query: 198 AARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRSVS 252
           AAR+FQLTREL H+S+GETIEWLL+QAEP+IIAATGTGT+P+  IST++ ++ SSG ++S
Sbjct: 76  AARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPAN-ISTLNISLRSSGSTLS 134

[Close]

BLAST of MELO3C024459.jh1 vs. TAIR 10
Match: AT1G69690.1 (TCP family transcription factor )

HSP 1 Score: 114.4 bits (285), Expect = 1.7e-25
Identity = 55/83 (66.27%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 169 SSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGT 228
           +S+KDRH KV GRGRR+RMPA+CAAR+FQLTRELGH+S+GETIEWLL+QAEP++IAATGT
Sbjct: 50  TSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGT 109

Query: 229 GTVPSGPISTVSSAMASSGRSVS 252
           GT+P+   ++++ ++ SS  S+S
Sbjct: 110 GTIPAN-FTSLNISLRSSRSSLS 131

The following BLAST results are available for this feature:

BLAST of MELO3C024459.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462463.1	6.02e-225	100.00	PREDICTED: uncharacterized protein LOC103500811 [Cucumis melo]	[more]
TYK07305.1	4.55e-135	99.03	transcription factor TCP11-like [Cucumis melo var. makuwa]	[more]
XP_004143267.1	6.14e-133	97.10	transcription factor TCP11 [Cucumis sativus] >KAE8647403.1 hypothetical protein ...	[more]
XP_038882900.1	2.98e-111	84.54	transcription factor TCP11 [Benincasa hispida]	[more]
XP_023543697.1	1.93e-108	81.73	transcription factor TCP11-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C024459.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJK7	5.7e-34	58.17	Transcription factor TCP11 OS=Arabidopsis thaliana OX=3702 GN=TCP11 PE=1 SV=1	[more]
Q9C518	1.5e-26	55.37	Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1	[more]
Q93Z00	2.6e-26	52.38	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
Q9LQF0	1.7e-25	53.33	Transcription factor TCP23 OS=Arabidopsis thaliana OX=3702 GN=TCP23 PE=1 SV=1	[more]
Q53PH2	1.1e-24	65.12	Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 ...	[more]

BLAST of MELO3C024459.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CGZ3	2.91e-225	100.00	uncharacterized protein LOC103500811 OS=Cucumis melo OX=3656 GN=LOC103500811 PE=...	[more]
A0A5D3C791	2.20e-135	99.03	Transcription factor TCP11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0KH86	2.66e-131	96.59	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G446400 PE=4 SV...	[more]
A0A6J1EK07	7.61e-108	81.25	transcription factor TCP11-like OS=Cucurbita moschata OX=3662 GN=LOC111433306 PE...	[more]
A0A6J1IR93	4.84e-101	78.85	transcription factor TCP11-like OS=Cucurbita maxima OX=3661 GN=LOC111478656 PE=4...	[more]

BLAST of MELO3C024459.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37000.1	4.1e-35	58.17	TCP family transcription factor	[more]
AT1G58100.1	1.1e-27	55.37	TCP family transcription factor	[more]
AT3G47620.1	1.8e-27	52.38	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]
AT1G35560.1	1.2e-26	53.33	TCP family transcription factor	[more]
AT1G69690.1	1.7e-25	66.27	TCP family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 55..153 e-value: 8.5E-29 score: 101.1
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 56..110 score: 26.536804
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..58
None	No IPR available	PANTHER	PTHR31072:SF4	TRANSCRIPTION FACTOR TCP16-RELATED	coord: 37..135
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 37..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024459.jh1.t1	MELO3C024459.jh1.t1	mRNA
MELO3C024459.jh1.t2	MELO3C024459.jh1.t2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity