MELO3C024372 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024372
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase I subunit rpa49
Location	chr01: 35240051 .. 35243604 (+)
RNA-Seq Expression	MELO3C024372
Synteny	MELO3C024372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGAAAAAGCCCCTAAACCCTTCGTTCCCCCCCCCCCCCCCCCCGCCCACTTCCTCTCTCTTCTTCTCTCATATTTTTTTGCCGCCACGCCTCTCAGGCCGCCACGCCAACCACCAATCGCCGTCGATGTATGTCTGAATCAAATGTTTTTTCTTTTATTTGTTATTTTTTCGATTCGTGATTTGTAACTAGTAAATTTGGAGCGATTCTAATATGGCTTCTTTTTTTGTATCTGTTCTTTTCGTGGACCGACCCGATCCTTTTTTGCCCTTGGTTCCTCATTCAGCGTGTCTTGCTTCAACCGCTGCAGCCGCCCCCAGTACCGACGGAAAATAAGTCTCCGCCGTCGTTCATTGCTGTCGGACTGTAATTCCCGAAGCCACTTCCTTCCTGTCCGGATTCTTCGGATTGATATCTTGAAATTTAGAGTTCGTCGACGGAATCAATGGCGGAAGACACGAAATCTCTTGAATTTGAAGAAAACCATAACGCAGAACCAGACGCAAACTCACAGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCTATCAATGAATGCTAAAATCCAAGTTCTCAGCAACCAGCCCCAGAAAATTCCGCCGGTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCTGACAAGGAACAGTCCCATTCTGTAAGGGCTAGGGTTTATAAGCACAGGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGTACCAATTATTTAGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTGGGTGTTCTTGATAAGGCCACACAAAGCTTAAAGATAGTGCCTATTGCATCGAATATGGTATTTTATTCTTCATAGTGAATGTAGAGAATTAGAATTTGTGAAAATTTGAATTCTACTTGATGCATTTTTGTTTTTGTTTACTCACTTAAGTTATAAACGCCTCTTCTTCTTCATCATCATTATTTATTTACATATCATCAATTTTTTTGTATATTTTCCTTCGAATGAATTGGGCTCCTAGATCTGCTTTGCTCGATCTTTTCTGGAAAGACCACTAAACGGGGTGTGAGGCTGGGAGATTACACCACTGAAGTTTCTGAACTATTAAGTTTGTGCTATTGTGAACTTTGTTGGATATGGTTTTGTTTTTTTCATTTTGTTTCAAACTTACTACATAATTTTTTTAGAATTAGGCTTACCTTTGTGATGCATTTTATCTACTTTACTAATTGTTAATACTGTACCTAATAATCATAATTGTGTTGCTAAGTTTGATATTTATGTCTGCAGATACTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTGGCAAATGAAGAGCTCTCTCTGCAGGAGAAAGCTAATAGAATGAGAGAGCTCACCGCACTCTATGGAACAAAGAAGTCAAAAAAACAGGTAGAAATTGAATACTGGAATTGCTCTCTTGCAACCAACTTTCCCTTGGGCATGTTTGAAATGAATTTTCGACTGCCCAAGCTTGGGAGTGATTTAAAAAGGAGTTAAAATAATTTTTGTCATATTTAAATTGTTCTGAAACACATCTATAATCACATTATCGTATCATCAAAATTGGTTTAAATTGGTTTTGAACTATGAAAAACATGTTTAAGAATAATTTTGAAAATCACAAAAGCAATATAAAATGTTTTGAAGTCAATTTCAAACATGGACTTAGTACCAACGCATGCTGGACTTAACCTTATTAGCAAGTGGAGAAATCTTGGGTGGCATGTTATCATGAAAGAGGATTACATCTTTTCTATTTACCTGTTTTGTTGCTTTTAGTTTGTTTCGGATGGGATCTGTTCCATTTTTCCAATATCATCATCTTGACCCTCTTCCTGAAAAAGAATCTCTTTGACACTTGAGATGGAGATGTTTGACCATGACCTCTAAGTAAAAGAAACTATGTTTTCGATGATGAAGTCACTTACAAATGGCAGTTTTAGGAAGTAGCAACAAAACGTTTGATATTTGTTAATTTGTTGCAGGCACAGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGAAACCAAGAACGATCTAGATGGGAGAATGAAAAATGTGGTGGTAAACAAAGAGGCCTTGGAAGGTACGCAGGCAGAGATTGCTCGTAATATACCAGCATACAATGCTTCTGCAACTACTCCACAAGAAGTTTACCCGCTCGACAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTATTTCCGTTTGCGAGAAACAGCTGAAATAAATGCTACTTATCCTTCTTTTGTTCGCAACAGAATTTATAAATTGCAAGACATTCAGGTACGGTGTCAAGAAGGTTCTGGTTGTAATTGTCTTTATGAATATTCTGAGATTAAATATTCTTCCTTTCTGATACATATTCATGAATCATGTGGATGGCCAATATTATTTGTTAAGTATCATGCCTCATTTGTTGGTTGATTGATGTTTTCAATCTGCGTGCTTTTTGAAACTACTCGACTTCTTTGTTTGATTCTTTGCCTTCATTTCTTTAGTGGAAAAAGAGCTTGCTCTCAAGCCTTGACTACTAACAGGCATTCGCTATTTATTCATTTTCTTCCTATTGCTTGTTCTAAGTTGTATAAAGGCTTTCAGTAGGTGTACTTGTCGATTTTTGAAACAAGTATTTTTCTGTTGAAAAGGAGCCTCTTTTCGGAACAGAACGACTGTTTATTCAGGGCTTTCTATTTTTCATTATTTGTATTGAATCTTTTCTTTTTTGTTTTGATGTTTAAATCATCTTAGGACGAGGAAGAGAAAAAGAAGCTCTGCTGCATATTTTCATATATCACTCATCTGATAAAGTATAAGGATCAGCATTCTATGGGTGATGTTTCTTCTGCAAAGGGTCATAAAATTCCCAGCATGCTACGCCAAAAGTTCTCATCCATGTTTCCAACTGCCGAGTCGAGAAGACTGTCAGCAGATAAAATTAATCTTCTCATTAGCCACGTTTTGGTGCTTACGCTATTTGCCGATGAATTCAGCAGCGATCCTGCAGACATAGCAAAGGATTTGAGAACTAGTCCTTACGATCTAAGACTCCATTTTGATAATTTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCATTGGCTACACTTCCTGTTCCTCTTCAATTTCCCGAGTTGAGGCAAAAGCGACGACGATAGGCGTGATGGCTGGATTATAGAAGTTTCACTTTTATTGTTGTTGAAGAAGCTGAATTCTTTCTAGGCAGCAAAGTTGGAGCAATTTTGTGGAGTGAAACGGGTAAATGGTCATTTTTGTAATTCAGATGTTATTTCTTTCGTATTGCAAATGGCAATGCCAACTTGTTTATCTATGAAGTACTTCTGCTTAGAAAGGTGTTTCATTATTTGGAAGTTGAAACTTTGGATAATCACAAATTTATTTGGAAACAAGTCAAATGACTTTTCTTTTTTATCTTACAAA

mRNA sequence

GAAGAAAAAGCCCCTAAACCCTTCGTTCCCCCCCCCCCCCCCCCCGCCCACTTCCTCTCTCTTCTTCTCTCATATTTTTTTGCCGCCACGCCTCTCAGGCCGCCACGCCAACCACCAATCGCCGTCGATCGTGTCTTGCTTCAACCGCTGCAGCCGCCCCCAGTACCGACGGAAAATAAGTCTCCGCCGTCGTTCATTGCTGTCGGACTGTAATTCCCGAAGCCACTTCCTTCCTGTCCGGATTCTTCGGATTGATATCTTGAAATTTAGAGTTCGTCGACGGAATCAATGGCGGAAGACACGAAATCTCTTGAATTTGAAGAAAACCATAACGCAGAACCAGACGCAAACTCACAGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCTATCAATGAATGCTAAAATCCAAGTTCTCAGCAACCAGCCCCAGAAAATTCCGCCGGTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCTGACAAGGAACAGTCCCATTCTGTAAGGGCTAGGGTTTATAAGCACAGGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGTACCAATTATTTAGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTGGGTGTTCTTGATAAGGCCACACAAAGCTTAAAGATAGTGCCTATTGCATCGAATATGATACTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTGGCAAATGAAGAGCTCTCTCTGCAGGAGAAAGCTAATAGAATGAGAGAGCTCACCGCACTCTATGGAACAAAGAAGTCAAAAAAACAGGCACAGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGAAACCAAGAACGATCTAGATGGGAGAATGAAAAATGTGGTGGTAAACAAAGAGGCCTTGGAAGGTACGCAGGCAGAGATTGCTCGTAATATACCAGCATACAATGCTTCTGCAACTACTCCACAAGAAGTTTACCCGCTCGACAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTATTTCCGTTTGCGAGAAACAGCTGAAATAAATGCTACTTATCCTTCTTTTGTTCGCAACAGAATTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAAAAGAAGCTCTGCTGCATATTTTCATATATCACTCATCTGATAAAGTATAAGGATCAGCATTCTATGGGTGATGTTTCTTCTGCAAAGGGTCATAAAATTCCCAGCATGCTACGCCAAAAGTTCTCATCCATGTTTCCAACTGCCGAGTCGAGAAGACTGTCAGCAGATAAAATTAATCTTCTCATTAGCCACGTTTTGGTGCTTACGCTATTTGCCGATGAATTCAGCAGCGATCCTGCAGACATAGCAAAGGATTTGAGAACTAGTCCTTACGATCTAAGACTCCATTTTGATAATTTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCATTGGCTACACTTCCTGTTCCTCTTCAATTTCCCGAGTTGAGGCAAAAGCGACGACGATAGGCGTGATGGCTGGATTATAGAAGTTTCACTTTTATTGTTGTTGAAGAAGCTGAATTCTTTCTAGGCAGCAAAGTTGGAGCAATTTTGTGGAGTGAAACGGGTAAATGGTCATTTTTGTAATTCAGATGTTATTTCTTTCGTATTGCAAATGGCAATGCCAACTTGTTTATCTATGAAGTACTTCTGCTTAGAAAGGTGTTTCATTATTTGGAAGTTGAAACTTTGGATAATCACAAATTTATTTGGAAACAAGTCAAATGACTTTTCTTTTTTATCTTACAAA

Coding sequence (CDS)

ATGGCGGAAGACACGAAATCTCTTGAATTTGAAGAAAACCATAACGCAGAACCAGACGCAAACTCACAGTCTCCAGCGAAGAAGAAGAAGAAGAGTGAAAAGAAGAAGAAACGAGTTCTATCAATGAATGCTAAAATCCAAGTTCTCAGCAACCAGCCCCAGAAAATTCCGCCGGTAGTTGGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGCTGACAAGGAACAGTCCCATTCTGTAAGGGCTAGGGTTTATAAGCACAGGAACAAACCAAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGTACCAATTATTTAGGCGAGGCTACCGCTGGGAAACAGCATTGCACCTATGCTCTGGGTGTTCTTGATAAGGCCACACAAAGCTTAAAGATAGTGCCTATTGCATCGAATATGATACTTAGATTAGACCCAAAAGTCAGAGGTTCAGACGTTTCTGAAAATGAATCCCCAAGTGTGGCAAATGAAGAGCTCTCTCTGCAGGAGAAAGCTAATAGAATGAGAGAGCTCACCGCACTCTATGGAACAAAGAAGTCAAAAAAACAGGCACAGAAGCTGCATGCATTGAAGCAAGAGGATGATCCTGAAACCAAGAACGATCTAGATGGGAGAATGAAAAATGTGGTGGTAAACAAAGAGGCCTTGGAAGGTACGCAGGCAGAGATTGCTCGTAATATACCAGCATACAATGCTTCTGCAACTACTCCACAAGAAGTTTACCCGCTCGACAAGATTATCCTCAAGGGAGAATGGAGTTTTCTGGAAGATCTTTATTTCCGTTTGCGAGAAACAGCTGAAATAAATGCTACTTATCCTTCTTTTGTTCGCAACAGAATTTATAAATTGCAAGACATTCAGGACGAGGAAGAGAAAAAGAAGCTCTGCTGCATATTTTCATATATCACTCATCTGATAAAGTATAAGGATCAGCATTCTATGGGTGATGTTTCTTCTGCAAAGGGTCATAAAATTCCCAGCATGCTACGCCAAAAGTTCTCATCCATGTTTCCAACTGCCGAGTCGAGAAGACTGTCAGCAGATAAAATTAATCTTCTCATTAGCCACGTTTTGGTGCTTACGCTATTTGCCGATGAATTCAGCAGCGATCCTGCAGACATAGCAAAGGATTTGAGAACTAGTCCTTACGATCTAAGACTCCATTTTGATAATTTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCATTGGCTACACTTCCTGTTCCTCTTCAATTTCCCGAGTTGAGGCAAAAGCGACGACGATAG

Protein sequence

MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLATLPVPLQFPELRQKRRR

Homology

[Close]

BLAST of MELO3C024372 vs. NCBI nr
Match: XP_008462335.1 (PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo])

HSP 1 Score: 847.0 bits (2187), Expect = 7.0e-242
Identity = 436/436 (100.00%), Postives = 436/436 (100.00%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV
Sbjct: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60

Query: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120
           GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG
Sbjct: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120

Query: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180
           KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN
Sbjct: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180

Query: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240
           RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN
Sbjct: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240

Query: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300
           IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
Sbjct: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300

Query: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360
           QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS
Sbjct: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360

Query: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420
           ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT
Sbjct: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420

Query: 421 LPVPLQFPELRQKRRR 437
           LPVPLQFPELRQKRRR
Sbjct: 421 LPVPLQFPELRQKRRR 436

[Close]

BLAST of MELO3C024372 vs. NCBI nr
Match: KAA0059416.1 (DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa] >TYK03910.1 DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa])

HSP 1 Score: 844.7 bits (2181), Expect = 3.5e-241
Identity = 435/436 (99.77%), Postives = 435/436 (99.77%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MAEDTKSLE EENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV
Sbjct: 1   MAEDTKSLELEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60

Query: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120
           GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG
Sbjct: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120

Query: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180
           KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN
Sbjct: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180

Query: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240
           RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN
Sbjct: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240

Query: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300
           IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
Sbjct: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300

Query: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360
           QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS
Sbjct: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360

Query: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420
           ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT
Sbjct: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420

Query: 421 LPVPLQFPELRQKRRR 437
           LPVPLQFPELRQKRRR
Sbjct: 421 LPVPLQFPELRQKRRR 436

[Close]

BLAST of MELO3C024372 vs. NCBI nr
Match: XP_004141689.1 (DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus] >KGN45511.1 hypothetical protein Csa_016354 [Cucumis sativus])

HSP 1 Score: 798.5 bits (2061), Expect = 2.9e-227
Identity = 411/436 (94.27%), Postives = 425/436 (97.48%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MA+DTKS+E EENH     A+SQSPAKKKKKSEKKKKRVLSM+AKIQVLSNQPQK PPVV
Sbjct: 4   MADDTKSVELEENHY----ASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVV 63

Query: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120
           GYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVSPTGSNVDFVGTNYLGEATAG
Sbjct: 64  GYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGTNYLGEATAG 123

Query: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180
           KQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KAN
Sbjct: 124 KQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKAN 183

Query: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240
           RMRELTALYGTKKSKKQAQKLHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARN
Sbjct: 184 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARN 243

Query: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300
           IPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Sbjct: 244 IPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI 303

Query: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360
           QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS
Sbjct: 304 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 363

Query: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420
           ADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT
Sbjct: 364 ADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 423

Query: 421 LPVPLQFPELRQKRRR 437
           LP+PLQFPELRQKRRR
Sbjct: 424 LPIPLQFPELRQKRRR 435

[Close]

BLAST of MELO3C024372 vs. NCBI nr
Match: XP_038896156.1 (DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida])

HSP 1 Score: 774.2 bits (1998), Expect = 5.8e-220
Identity = 397/436 (91.06%), Postives = 415/436 (95.18%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MAEDTKSLE EENH AE D NS+SPAKKKKKSEKKKKRV S+NAKIQVL N PQK PP+V
Sbjct: 1   MAEDTKSLELEENHYAERDTNSESPAKKKKKSEKKKKRVPSVNAKIQVLGNHPQKTPPIV 60

Query: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120
           GYFPSGFDPHKDAD+EQ +SVRARVYKH+NKPNRMQLVVSPTGSNVDFVGTNYLGEATAG
Sbjct: 61  GYFPSGFDPHKDADEEQ-NSVRARVYKHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120

Query: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180
           KQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDVSENESPSVANEELS+QEKA+
Sbjct: 121 KQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVSENESPSVANEELSVQEKAD 180

Query: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240
           RMRELT LYGTKKSKKQAQKLHALKQEDDP+TK DLD RMKNVVVN EALEGTQAEIARN
Sbjct: 181 RMRELTVLYGTKKSKKQAQKLHALKQEDDPDTKKDLDVRMKNVVVNIEALEGTQAEIARN 240

Query: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300
           IP YNASATTPQE YPLDKIILKGEW+FLEDLYFRL+ETAEI+A YP FVR+RIYKLQDI
Sbjct: 241 IPTYNASATTPQEAYPLDKIILKGEWNFLEDLYFRLQETAEISANYPYFVRHRIYKLQDI 300

Query: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360
           QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPT+ESRR+S
Sbjct: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTSESRRIS 360

Query: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420
            +KINLLISHVLVLTLF DEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSL T
Sbjct: 361 TEKINLLISHVLVLTLFVDEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLVT 420

Query: 421 LPVPLQFPELRQKRRR 437
           LP+PLQFP+LRQKRRR
Sbjct: 421 LPIPLQFPDLRQKRRR 435

[Close]

BLAST of MELO3C024372 vs. NCBI nr
Match: XP_022992259.1 (DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima])

HSP 1 Score: 722.6 bits (1864), Expect = 2.0e-204
Identity = 369/439 (84.05%), Postives = 401/439 (91.34%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MAEDTKS E E+NH +EPDANSQSPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V
Sbjct: 1   MAEDTKSFELEDNHYSEPDANSQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLV 60

Query: 61  GYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120
            YFPSGFDPHKDA++   E+  SVRARVY+H+NKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  CYFPSGFDPHKDANEEAVEEQDSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 121 TAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQE 180
           TAGKQHC+Y LGVLDKATQSLKIVPIASNMI RLDP++RGSDVSE ES SV NEELS+QE
Sbjct: 121 TAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESQSVENEELSVQE 180

Query: 181 KANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEI 240
           KA +MRELT LYGTKKS  QA+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A+I
Sbjct: 181 KAEKMRELTNLYGTKKSINQAKKLHSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQI 240

Query: 241 ARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL 300
           ARNIP YN SATTP+E YPLDKIILKGEWSFLED+Y  L+E AEI+A YPSFVRNRIYKL
Sbjct: 241 ARNIPTYNVSATTPREAYPLDKIILKGEWSFLEDIYSLLQEEAEISAKYPSFVRNRIYKL 300

Query: 301 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESR 360
           QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+R
Sbjct: 301 QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEAR 360

Query: 361 RLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420
           RLS + INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 421 LATLPVPLQFPELRQKRRR 437
           L TLP PL+FPELRQKRRR
Sbjct: 421 LVTLPTPLEFPELRQKRRR 439

[Close]

BLAST of MELO3C024372 vs. ExPASy Swiss-Prot
Match: Q54FE8 (DNA-directed RNA polymerase I subunit rpa49 OS=Dictyostelium discoideum OX=44689 GN=polr1e PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-11
Identity = 87/383 (22.72%), Postives = 172/383 (44.91%), Query Frame = 0


Query: 58  PVVGYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEA 117
           P V  F  G  P    +KE      +     +NK +R+ L      +N D +   Y  E 
Sbjct: 19  PCVLKFSQGLPPLSFIEKEPEFISMST----KNKRHRVVL------TNTDQL--EYESED 78

Query: 118 TAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQE 177
              K +  YA+G+ DK T+ LKIVP     I  ++  V G  ++ + S  ++ E     E
Sbjct: 79  KDSK-YAKYAIGIFDKNTKQLKIVP---TKIQTMNQSVIGYTLTLDSSSVISRE-----E 138

Query: 178 KANRMRELTALYGTKKSKKQAQKLHALKQE--DDPETKNDLDGRMKNVVVNKEALEGTQA 237
           + +++++L   +G+K +KK+ QK+     E  D  +T   +D       V  E  +    
Sbjct: 139 RYDKIKKLADSFGSKITKKKMQKMEMENVENLDYEKTTKSID------AVKNELADIESN 198

Query: 238 EIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFR--LRETAEINATYPSFVRNR 297
           E   ++P ++A     +++Y ++ I+    +  L    F   + +T+E  +  P + +++
Sbjct: 199 EKPFDLPDFDAETNDVRKIYNIEAILPPRIFFGLNHQPFLDIISKTSEAPSYLPEYFKDQ 258

Query: 298 IYKLQDIQDEEEKKKLCCIFSYITH---LIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSM 357
           + + +DI+DEE+    C + +++ +   L+K K  H    +      ++ + L   F S 
Sbjct: 259 LKRFEDIKDEEKVVYNCKLLTFMWYSMILMKSKGGHE-PLIKEGCTSEVINFLVSIFGSK 318

Query: 358 FPTAESRRLSADKINLLISHVLVLTLFADEFS-SDPADIAKDLRTSPYDLRLHFDNLGCK 417
               +      DK+  + +++ +  L  ++F  +D   +A+ L  +      HF  +GCK
Sbjct: 319 INHKKYNISQDDKLK-IYNYLAIFALKLEDFQITDIKSLAQSLSLTSSSFEKHFTRVGCK 372

Query: 418 FIRKNNLSLAT-LPVPLQFPELR 432
            +R  +   +  L  PL+ P+ R
Sbjct: 379 VVRIGSEKRSVRLEAPLKLPKAR 372

[Close]

BLAST of MELO3C024372 vs. ExPASy Swiss-Prot
Match: O14086 (DNA-directed RNA polymerase I subunit rpa49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa49 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.9e-09
Identity = 112/446 (25.11%), Postives = 189/446 (42.38%), Query Frame = 0


Query: 29  KKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVVGYFPSGFDPHKDADKEQSHSVRARVYKH 88
           K K  K +         +++L      +PP+V    SGF P          + R ++ K 
Sbjct: 7   KGKKRKYRDSHSGDEKSVKILPLSESSLPPLVTTI-SGFYP--------PENTRFQLLKK 66

Query: 89  RNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCTYALGVLDKATQSLKIVPIA---- 148
            N+ NR   ++  T   V F   N   ++TA  +   Y L V DK  +  KIVP      
Sbjct: 67  SNQSNRDASLIGRT-ERVQFEAKN---QSTATVE-ANYCLAVADKTGRVKKIVPAKYLNT 126

Query: 149 -SNMILRLDPKVRGSDVSENESPSVANEELSLQEKANRMRELTALYGTKKSKKQAQKLHA 208
               IL L  K       + +  +V+     ++++AN    L   +GT+KS+K   +  A
Sbjct: 127 FERNILALQEK---DKFLKKKHGTVSG--TVMEQRAN----LGLAFGTRKSQKAIMEESA 186

Query: 209 LKQEDDPETKNDL-DGRMKNVVVNKEALEGTQAEIA------RNIPAYNASATTPQEVYP 268
            + +   ET  D+ D  + NV    EAL  TQ +IA      R IP  N  A + ++ Y 
Sbjct: 187 NRVK--AETLGDVKDQLVSNVQKATEALP-TQEDIAAAQAQDRPIPPVNVGAESIEDAYK 246

Query: 269 LDKIILKGEWS--FLEDLYFRLRE---TAEINATYPSFVRNRIYKLQDIQDEEEKKKLCC 328
           L+ II K E+S  +++ L     E      +   +  F+  R  +L  I++ ++K+    
Sbjct: 247 LEDIIPKEEFSAIYIKPLLENPDERNWAKLLPYRHSLFINERFQRLLSIEEVDQKR--AR 306

Query: 329 IFSYITHLIKYK-DQHSMGDVSSAKGHKI--PSMLRQKFSSMFPTAE---SRRLSADKIN 388
           I  YI+ L  +   + S+G+  + +      P +L       F       S ++S+ +++
Sbjct: 307 ILYYISLLQAFLFSRRSVGNRETLRKKLADPPEILIDGLIKRFTQTTGIGSVQVSSREVD 366

Query: 389 LLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIR------------- 437
            +I ++LVL L  D +S+D   +A DL          F  +GC+ +              
Sbjct: 367 KIICYILVLCLIVDNYSTDVLTLANDLNVKTMKANELFRTVGCRIMAYTETQRMALGLNK 424

[Close]

BLAST of MELO3C024372 vs. ExPASy TrEMBL
Match: A0A1S3CH93 (DNA-directed RNA polymerase I subunit rpa49 OS=Cucumis melo OX=3656 GN=LOC103500711 PE=3 SV=1)

HSP 1 Score: 847.0 bits (2187), Expect = 3.4e-242
Identity = 436/436 (100.00%), Postives = 436/436 (100.00%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV
Sbjct: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60

Query: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120
           GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG
Sbjct: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120

Query: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180
           KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN
Sbjct: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180

Query: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240
           RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN
Sbjct: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240

Query: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300
           IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
Sbjct: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300

Query: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360
           QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS
Sbjct: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360

Query: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420
           ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT
Sbjct: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420

Query: 421 LPVPLQFPELRQKRRR 437
           LPVPLQFPELRQKRRR
Sbjct: 421 LPVPLQFPELRQKRRR 436

[Close]

BLAST of MELO3C024372 vs. ExPASy TrEMBL
Match: A0A5D3BXN3 (DNA-directed RNA polymerase I subunit rpa49 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001060 PE=3 SV=1)

HSP 1 Score: 844.7 bits (2181), Expect = 1.7e-241
Identity = 435/436 (99.77%), Postives = 435/436 (99.77%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MAEDTKSLE EENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV
Sbjct: 1   MAEDTKSLELEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60

Query: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120
           GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG
Sbjct: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120

Query: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180
           KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN
Sbjct: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180

Query: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240
           RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN
Sbjct: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240

Query: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300
           IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI
Sbjct: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300

Query: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360
           QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS
Sbjct: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360

Query: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420
           ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT
Sbjct: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420

Query: 421 LPVPLQFPELRQKRRR 437
           LPVPLQFPELRQKRRR
Sbjct: 421 LPVPLQFPELRQKRRR 436

[Close]

BLAST of MELO3C024372 vs. ExPASy TrEMBL
Match: A0A0A0KCN4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450680 PE=3 SV=1)

HSP 1 Score: 798.5 bits (2061), Expect = 1.4e-227
Identity = 411/436 (94.27%), Postives = 425/436 (97.48%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MA+DTKS+E EENH     A+SQSPAKKKKKSEKKKKRVLSM+AKIQVLSNQPQK PPVV
Sbjct: 4   MADDTKSVELEENHY----ASSQSPAKKKKKSEKKKKRVLSMDAKIQVLSNQPQKTPPVV 63

Query: 61  GYFPSGFDPHKDADKEQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEATAG 120
           GYFPSGFDPHKDADKEQS SVRARVYKH+N+PNRMQLVVSPTGSNVDFVGTNYLGEATAG
Sbjct: 64  GYFPSGFDPHKDADKEQSRSVRARVYKHKNRPNRMQLVVSPTGSNVDFVGTNYLGEATAG 123

Query: 121 KQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQEKAN 180
           KQHCTYALGVLDKATQSLKIVPIASNMI RLDPKVRGSDV+ENESPSVANEELS Q+KAN
Sbjct: 124 KQHCTYALGVLDKATQSLKIVPIASNMIFRLDPKVRGSDVTENESPSVANEELSGQDKAN 183

Query: 181 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEIARN 240
           RMRELTALYGTKKSKKQAQKLHALKQEDDPETK+DLDGRMKNVVVNKEALEGTQAE+ARN
Sbjct: 184 RMRELTALYGTKKSKKQAQKLHALKQEDDPETKSDLDGRMKNVVVNKEALEGTQAEVARN 243

Query: 241 IPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKLQDI 300
           IPAYNASATTPQE YPLDKIILKGEWSFLEDLYFRL+ETAEI+ATYPSFVRNRIYKLQDI
Sbjct: 244 IPAYNASATTPQEAYPLDKIILKGEWSFLEDLYFRLQETAEISATYPSFVRNRIYKLQDI 303

Query: 301 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 360
           QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS
Sbjct: 304 QDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESRRLS 363

Query: 361 ADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 420
           ADKINLLISHVLVL+LFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT
Sbjct: 364 ADKINLLISHVLVLSLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLAT 423

Query: 421 LPVPLQFPELRQKRRR 437
           LP+PLQFPELRQKRRR
Sbjct: 424 LPIPLQFPELRQKRRR 435

[Close]

BLAST of MELO3C024372 vs. ExPASy TrEMBL
Match: A0A6J1JX25 (DNA-directed RNA polymerase I subunit rpa49-like OS=Cucurbita maxima OX=3661 GN=LOC111488633 PE=3 SV=1)

HSP 1 Score: 722.6 bits (1864), Expect = 9.7e-205
Identity = 369/439 (84.05%), Postives = 401/439 (91.34%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MAEDTKS E E+NH +EPDANSQSPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V
Sbjct: 1   MAEDTKSFELEDNHYSEPDANSQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLV 60

Query: 61  GYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120
            YFPSGFDPHKDA++   E+  SVRARVY+H+NKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  CYFPSGFDPHKDANEEAVEEQDSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 121 TAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQE 180
           TAGKQHC+Y LGVLDKATQSLKIVPIASNMI RLDP++RGSDVSE ES SV NEELS+QE
Sbjct: 121 TAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESQSVENEELSVQE 180

Query: 181 KANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEI 240
           KA +MRELT LYGTKKS  QA+KLH+LKQEDDP+TK DLDG+MKNVVVNKEALE T A+I
Sbjct: 181 KAEKMRELTNLYGTKKSINQAKKLHSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQI 240

Query: 241 ARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL 300
           ARNIP YN SATTP+E YPLDKIILKGEWSFLED+Y  L+E AEI+A YPSFVRNRIYKL
Sbjct: 241 ARNIPTYNVSATTPREAYPLDKIILKGEWSFLEDIYSLLQEEAEISAKYPSFVRNRIYKL 300

Query: 301 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESR 360
           QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+R
Sbjct: 301 QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEAR 360

Query: 361 RLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420
           RLS + INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 421 LATLPVPLQFPELRQKRRR 437
           L TLP PL+FPELRQKRRR
Sbjct: 421 LVTLPTPLEFPELRQKRRR 439

[Close]

BLAST of MELO3C024372 vs. ExPASy TrEMBL
Match: A0A6J1GQS4 (DNA-directed RNA polymerase I subunit rpa49-like OS=Cucurbita moschata OX=3662 GN=LOC111456250 PE=3 SV=1)

HSP 1 Score: 717.2 bits (1850), Expect = 4.1e-203
Identity = 366/439 (83.37%), Postives = 399/439 (90.89%), Query Frame = 0


Query: 1   MAEDTKSLEFEENHNAEPDANSQSPAKKKKKSEKKKKRVLSMNAKIQVLSNQPQKIPPVV 60
           MAEDTKS E E+NH +EPD+N QSPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V
Sbjct: 1   MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLV 60

Query: 61  GYFPSGFDPHKDADK---EQSHSVRARVYKHRNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120
            YFPSGFDPHKD ++   E+  SVRARVY+H+NKPNRMQLVVSPTGSNVDFVGTNYLGEA
Sbjct: 61  CYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEA 120

Query: 121 TAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENESPSVANEELSLQE 180
           TAGKQHC+Y LGVLDKATQSLKIVPIASNMI RLDP++RGSDVSE ESPSV NEELS+QE
Sbjct: 121 TAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQE 180

Query: 181 KANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQAEI 240
           KA +MRELT LYGTKKS  QA+KL +LKQEDDP+TK DLDG+MKNVVVNKEALE T A+I
Sbjct: 181 KAEKMRELTNLYGTKKSINQAKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQI 240

Query: 241 ARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRLRETAEINATYPSFVRNRIYKL 300
           ARNIP YN SATTP+E YPLDKIILKGEWS+LEDLY  L+E AEI+A YPSFVRNRIYKL
Sbjct: 241 ARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL 300

Query: 301 QDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTAESR 360
           QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+R
Sbjct: 301 QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEAR 360

Query: 361 RLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420
           RLS + INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS
Sbjct: 361 RLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPYDLRLHFDNLGCKFIRKNNLS 420

Query: 421 LATLPVPLQFPELRQKRRR 437
           L TLP PL+FPELRQKRRR
Sbjct: 421 LVTLPTPLEFPELRQKRRR 439

[Close]

BLAST of MELO3C024372 vs. TAIR 10
Match: AT3G13940.1 (DNA binding;DNA-directed RNA polymerases )

HSP 1 Score: 350.9 bits (899), Expect = 1.5e-96
Identity = 198/441 (44.90%), Postives = 284/441 (64.40%), Query Frame = 0


Query: 9   EFEENHNAEPDANSQSPAKKKKKSEKK--------KKRVLSMNAKIQVLSNQPQKIPPVV 68
           E  +  N E D N+    +KK++  KK         +    +  K+  ++ +P +I P+V
Sbjct: 5   EKNDYRNEEEDFNTPQQLQKKQRKGKKIATETEDENEEDKRVTLKVTQVAERPDRISPIV 64

Query: 69  GYFPSGFDPHK---DADKEQSHSVRARVYKHR-NKPNRMQLVVSPTGSNVDFVGTNYLGE 128
            YF +G+DP K      K    + +  VYKH+ +   R+Q+VVSP G+ V+FVGTNY GE
Sbjct: 65  AYFSTGYDPCKVDPKTGKRVHETPKVTVYKHKDDSKKRIQVVVSPPGARVEFVGTNYTGE 124

Query: 129 ATAGKQHCTYALGVLDKATQSLKIVPIASNMILRLDPKVRGSDVSENE-SPSVANEELSL 188
             A  Q  TY +GV ++  ++L+I+P+A N I+RL+P+V+  + +E E S S   +EL  
Sbjct: 125 -QAAMQTNTYRVGVFNREAKTLRILPVAHNKIIRLEPRVKAQETNEEEASGSAVVKELEE 184

Query: 189 QEKANRMRELTALYGTKKSKKQAQKLHALKQEDDPETKNDLDGRMKNVVVNKEALEGTQA 248
            +   R R     Y TKK+  + +K  AL   DD  T+  LDG++  + VN  ALEGT +
Sbjct: 185 LKTGERDR-----YNTKKAVTRDKKKRALYMGDDAATQKVLDGKLSELGVNTAALEGTSS 244

Query: 249 EIARNIPAYNASATTPQEVYPLDKIILKGEWSFLEDLYFRL-RETAEINATYPSFVRNRI 308
            +ARNIP YN +ATT  E YPL+KII KG+WSFLED+Y+ L +ET      YP FVRNR+
Sbjct: 245 TVARNIPPYNTAATTANEAYPLEKIIEKGDWSFLEDIYWLLQQETEAATEAYPVFVRNRL 304

Query: 309 YKLQDIQDEEEKKKLCCIFSYITHLIKYKDQHSMGDVSSAKGHKIPSMLRQKFSSMFPTA 368
           Y+L+DI+D+ +K+ +C   + +THL+K+KD++SM    SAK HK+P + RQKF+SMF  +
Sbjct: 305 YRLRDIKDDMKKQTVCGAATLLTHLVKFKDRNSMNGYDSAKDHKMPDIFRQKFNSMFKDS 364

Query: 369 ESRRLSADKINLLISHVLVLTLFADEFSSDPADIAKDLRTSPYDLRLHFDNLGCKFIRKN 428
           ES R+  DKINLLIS+VLVL+L  D F +DP DIAKDLR S  +LR HF  LGCKF+++N
Sbjct: 365 ESDRIPVDKINLLISYVLVLSLHVDNFMTDPEDIAKDLRISTVELRKHFLQLGCKFLKQN 424

Query: 429 NLSLATLPVPLQFPELRQKRR 436
           + ++ATLP PL FPE+ ++RR
Sbjct: 425 STTVATLPTPLNFPEVNRRRR 439

The following BLAST results are available for this feature:

BLAST of MELO3C024372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462335.1	7.0e-242	100.00	PREDICTED: DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo]	[more]
KAA0059416.1	3.5e-241	99.77	DNA-directed RNA polymerase I subunit rpa49 [Cucumis melo var. makuwa] >TYK03910...	[more]
XP_004141689.1	2.9e-227	94.27	DNA-directed RNA polymerase I subunit rpa49 [Cucumis sativus] >KGN45511.1 hypoth...	[more]
XP_038896156.1	5.8e-220	91.06	DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]	[more]
XP_022992259.1	2.0e-204	84.05	DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]	[more]

BLAST of MELO3C024372 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54FE8	2.4e-11	22.72	DNA-directed RNA polymerase I subunit rpa49 OS=Dictyostelium discoideum OX=44689...	[more]
O14086	3.9e-09	25.11	DNA-directed RNA polymerase I subunit rpa49 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of MELO3C024372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CH93	3.4e-242	100.00	DNA-directed RNA polymerase I subunit rpa49 OS=Cucumis melo OX=3656 GN=LOC103500...	[more]
A0A5D3BXN3	1.7e-241	99.77	DNA-directed RNA polymerase I subunit rpa49 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0KCN4	1.4e-227	94.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450680 PE=3 SV=1	[more]
A0A6J1JX25	9.7e-205	84.05	DNA-directed RNA polymerase I subunit rpa49-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1GQS4	4.1e-203	83.37	DNA-directed RNA polymerase I subunit rpa49-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of MELO3C024372 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13940.1	1.5e-96	44.90	DNA binding;DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 168..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
IPR009668	RNA polymerase I associated factor, A49-like	PFAM	PF06870	RNA_pol_I_A49	coord: 80..435 e-value: 7.5E-61 score: 206.1
IPR009668	RNA polymerase I associated factor, A49-like	PANTHER	PTHR14440	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49	coord: 28..435

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024372.1	MELO3C024372.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding