MELO3C024352 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024352
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	transcription initiation factor TFIID subunit 9
Location	chr01: 35097022 .. 35099598 (-)
RNA-Seq Expression	MELO3C024352
Synteny	MELO3C024352

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTCTAAACGAAAAAAAAGGAGAAGAAAAAATCACATTCAATCTCGCAAGTCTCTCCCAGCTCTCTCCATATCTCAGCGTCGCCCAGCCACAGCTTCCCCACTGCACCTCCGTCCCACGTTACGGTGAGCCATTTTCCATCTCTGCCTCTCTATGTTGTTAGATTTAGAATTTGGAGGTCTTCAACGAGCTGTCCAGCAAGGGTAAAAGTTGTTTCGGGTGATTTTTGGATAAGTACTGTAAATTGAGTTTGATTTTGGCGAGTTGAAACGAAGGACAGATTTGTTAGGGCGAAGATTTTGTAGTTTAAATGATTGAGAAACAATCTACACAAATTACCATTTTGTTTGTGGGGGTAGACATGACAATTAAAACATTAATTTTGACCTTCAAAATTGGGTGTGTTGATATTTCTATTCTTTTCATTGATGATATCCTTATTTTTCTTGTCCAGTTTTATTCAATTTTTTCTGGGTTCTTTGAGATTTTAGGGCAATTGATTTAATTTGGGTAGTTTGAATTCATAATTTTTCGATTAATTTTGAAAATTGGAATTAACTAGGGAAGAAAATGTCTACGTATGAGGACATAAAGCAGAGGAAAAAAAAAACCCTAATCTTTGTCTTCTACCCCTCCTTCTCTCTGTCACAGCCGTCGATCCCCTTTTCCCCTTTACAATTCATCTCCTTCTCCGACATCCTTCCCTCTAGCTGCGAATGCCACACTTAACCACGAGTTCGGCGCCAGACATCTTTTATGTGGTAGTTTACTTAGAAATCGTTGGTAATAAATTGTCACTGTTGAATTGTGTAAGCTATTCTTATGTTTTTGCATTCTTGTTTTATATAATATATATATCGCACTTAACTTCGTCATTAAAGCAATGCTCACTTCATAATTATCAAACGTGTGATATAAAAAGATGATGTTTGGAACATCAGTTTGCAAAAGTGATGTACATTTCTTGTGTGGTTGAAAAGGTTAGTAAGGAAATGTCTGACGGAGACGAGGAGTTACCGAGGGATGCTAAAATTGTGAAGACACTGTTGAAATCGATGGGGGTTGAAGATTATGAACCACGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTATGTTGTTGACGTACTGACGGATGCACAAGTCTATTCGGAGCATGCCGGCAAGGCTGCCATTGATTGTGATGATGTGAAGCTTGCTATTCAGTCGAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTAACAATGGCTTCATAGTCCAAATTACATGTAATTTGAGTTGATAAAATGTCTGGACGCTTGATATCTGATACATGGTTTACTGAAAGGCATTTGAAACTGAATTATTTGAACGGCAATCCTGGATCCTGGTTAGTTGCAGTGTATCTTGGAATCAAATCATCGTCTTGTTAACTGAATTATTTGAATAATAATAATCTAGTTGTTATTAGGGTATGGTCTTAACGGGTCTGACGAGTTGTCTGGTCTATATATATATATAGCCTGGAAAAAAAAGGCTTAGAGGTGGTATGTACTTGTAGAAAGATCACACTCAGGCACATTTTTTTCTTTCTATCTTCTCTCCCTGGTGAAGAAAAGTGTTTAACCGTGACTTCATTTTCTGTCAGGTTCTTCTAGAGTTGGCTAGAAACAGGAATAAGATCCCATTGCCAAGGTCGATTGGCGGGCCTGGTATTGCCCTTCCACCCGATCAAGACACATTGCTCAGTCCCAATTATCAACTGGCAATCCCGAAGAAGCAAGCAGTCGAAACAATGGAAGAAACAGAGGAAGATGAAGGTGATGACACAGTTGTTCCATCCCAAGAACCCAGCTCATCAGAAGTACCTCAACAACATGCCCCACAAAGAGTATCTTTTCCATTGGCAAAACGTCCAAAATTAACATAGTTGTTTTTCCTTCTTTGTTCAACCTCTAATGAAAAGGGGATTTGAAACAGATTCATTTGAAGTTGGTGTAAGTGTTTTGTTGGATATTATGAAATTATTGTATAATACATCTAAAAGAATTCAGTGGCTTAGTTTCCACTAATGTGTCAATTCCAAAGATATGGACATTTCTTCCCAACTTTATGGAGAAAATTACGTCTATGAGCGAGTGGTCTATAAAAGTTCTCAAATTGTCTTCAAATCACAACTAATAAGCCAGTACATGATAATGATGGAAAAGAAAAACCATATTAATGAAAATGAATTCCTACAAGACTGAGCACTCAAGAATGCTCTCCAAACAAGAGTGCTTTTTAATTTTGATTTTGAACGGTGTTGAATTTCAGTTAGTCATCTTTTTTTCTTTTTCATTTTTTGGTGTACAAAGACCCTTATATACAGAATAATTTGATAATCACTAATTGTATACCACAGAGAAACTAAGGTATGGTTAGCTCCAGAAACCAACAATGTTAGGAGCAACAGGAGACGGTCCGGGGTTTGATACCGTGATCCCACGGTCATACATTCGCTGGATTTCTTCCCTGTACTCTGTTAATGACTTGTCGGGTATGGTGGGAGTTAGCTCCACCACATCGCCCATCTTCAGCTTGCAC

mRNA sequence

TTCTCTAAACGAAAAAAAAGGAGAAGAAAAAATCACATTCAATCTCGCAAGTCTCTCCCAGCTCTCTCCATATCTCAGCGTCGCCCAGCCACAGCTTCCCCACTGCACCTCCGTCCCACGTTACGCCGTCGATCCCCTTTTCCCCTTTACAATTCATCTCCTTCTCCGACATCCTTCCCTCTAGCTGCGAATGCCACACTTAACCACGAGTTCGGCGCCAGACATCTTTTATGTGGTTAGTAAGGAAATGTCTGACGGAGACGAGGAGTTACCGAGGGATGCTAAAATTGTGAAGACACTGTTGAAATCGATGGGGGTTGAAGATTATGAACCACGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTATGTTGTTGACGTACTGACGGATGCACAAGTCTATTCGGAGCATGCCGGCAAGGCTGCCATTGATTGTGATGATGTGAAGCTTGCTATTCAGTCGAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTTCTTCTAGAGTTGGCTAGAAACAGGAATAAGATCCCATTGCCAAGGTCGATTGGCGGGCCTGGTATTGCCCTTCCACCCGATCAAGACACATTGCTCAGTCCCAATTATCAACTGGCAATCCCGAAGAAGCAAGCAGTCGAAACAATGGAAGAAACAGAGGAAGATGAAGGTGATGACACAGTTGTTCCATCCCAAGAACCCAGCTCATCAGAAGTACCTCAACAACATGCCCCACAAAGAGTATCTTTTCCATTGGCAAAACGTCCAAAATTAACATAGTTGTTTTTCCTTCTTTGTTCAACCTCTAATGAAAAGGGGATTTGAAACAGATTCATTTGAAGTTGGTGTAAGTGTTTTGTTGGATATTATGAAATTATTGTATAATACATCTAAAAGAATTCAGTGGCTTAGTTTCCACTAATGTGTCAATTCCAAAGATATGGACATTTCTTCCCAACTTTATGGAGAAAATTACGTCTATGAGCGAGTGGTCTATAAAAGTTCTCAAATTGTCTTCAAATCACAACTAATAAGCCAGTACATGATAATGATGGAAAAGAAAAACCATATTAATGAAAATGAATTCCTACAAGACTGAGCACTCAAGAATGCTCTCCAAACAAGAGTGCTTTTTAATTTTGATTTTGAACGGTGTTGAATTTCAGTTAGTCATCTTTTTTTCTTTTTCATTTTTTGGTGTACAAAGACCCTTATATACAGAATAATTTGATAATCACTAATTGTATACCACAGAGAAACTAAGGTATGGTTAGCTCCAGAAACCAACAATGTTAGGAGCAACAGGAGACGGTCCGGGGTTTGATACCGTGATCCCACGGTCATACATTCGCTGGATTTCTTCCCTGTACTCTGTTAATGACTTGTCGGGTATGGTGGGAGTTAGCTCCACCACATCGCCCATCTTCAGCTTGCAC

Coding sequence (CDS)

ATGCCACACTTAACCACGAGTTCGGCGCCAGACATCTTTTATGTGGTTAGTAAGGAAATGTCTGACGGAGACGAGGAGTTACCGAGGGATGCTAAAATTGTGAAGACACTGTTGAAATCGATGGGGGTTGAAGATTATGAACCACGAGTTATACACCAGTTTCTTGAGCTGTGGTATCGTTATGTTGTTGACGTACTGACGGATGCACAAGTCTATTCGGAGCATGCCGGCAAGGCTGCCATTGATTGTGATGATGTGAAGCTTGCTATTCAGTCGAAAGTTAATTTCAGCTTCTCGCAACCTCCTCCAAGAGAGGTTCTTCTAGAGTTGGCTAGAAACAGGAATAAGATCCCATTGCCAAGGTCGATTGGCGGGCCTGGTATTGCCCTTCCACCCGATCAAGACACATTGCTCAGTCCCAATTATCAACTGGCAATCCCGAAGAAGCAAGCAGTCGAAACAATGGAAGAAACAGAGGAAGATGAAGGTGATGACACAGTTGTTCCATCCCAAGAACCCAGCTCATCAGAAGTACCTCAACAACATGCCCCACAAAGAGTATCTTTTCCATTGGCAAAACGTCCAAAATTAACATAG

Protein sequence

MPHLTTSSAPDIFYVVSKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT

Homology

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BLAST of MELO3C024352 vs. NCBI nr
Match: XP_016902840.1 (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Cucumis melo])

HSP 1 Score: 392.5 bits (1007), Expect = 2.2e-105
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MPHLTTSSAPDIFYVVSKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYR 60
           MPHLTTSSAPDIFYVVSKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYR
Sbjct: 1   MPHLTTSSAPDIFYVVSKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYR 60

Query: 61  YVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLP 120
           YVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLP
Sbjct: 61  YVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLP 120

Query: 121 RSIGGPGIALPPDQDTLLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQ 180
           RSIGGPGIALPPDQDTLLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQ
Sbjct: 121 RSIGGPGIALPPDQDTLLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQ 180

Query: 181 QHAPQRVSFPLAKRPKLT 199
           QHAPQRVSFPLAKRPKLT
Sbjct: 181 QHAPQRVSFPLAKRPKLT 198

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BLAST of MELO3C024352 vs. NCBI nr
Match: XP_008462302.1 (PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo] >XP_008462303.1 PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo] >KAA0059398.1 transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo var. makuwa] >TYK03929.1 transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 354.4 bits (908), Expect = 6.5e-94
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79
           MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 199
           PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

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BLAST of MELO3C024352 vs. NCBI nr
Match: XP_011659620.1 (transcription initiation factor TFIID subunit 9 [Cucumis sativus] >KGN45487.1 hypothetical protein Csa_015827 [Cucumis sativus])

HSP 1 Score: 344.4 bits (882), Expect = 6.7e-91
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 199
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179

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BLAST of MELO3C024352 vs. NCBI nr
Match: XP_022953465.1 (transcription initiation factor TFIID subunit 9 [Cucurbita moschata])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 167/181 (92.27%), Postives = 174/181 (96.13%), Query Frame = 0


Query: 18  KEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG 77
           KEMS+GDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG
Sbjct: 39  KEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG 98

Query: 78  KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL 137
           KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL
Sbjct: 99  KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL 158

Query: 138 LSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKL 197
           LSPNYQLAIP+K+ VE MEETEEDEG D  VPSQEP S+EVPQQH PQRVSFPL+KRPK+
Sbjct: 159 LSPNYQLAIPRKRQVEAMEETEEDEGVD-AVPSQEP-STEVPQQHTPQRVSFPLSKRPKI 217

Query: 198 T 199
           T
Sbjct: 219 T 217

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BLAST of MELO3C024352 vs. NCBI nr
Match: XP_038896108.1 (transcription initiation factor TFIID subunit 9 [Benincasa hispida] >XP_038896109.1 transcription initiation factor TFIID subunit 9 [Benincasa hispida])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 168/179 (93.85%), Postives = 171/179 (95.53%), Query Frame = 0


Query: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELAR+RNKIPLPR IGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARSRNKIPLPRLIGGPGIALPPDQDTLLS 120

Query: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 199
           PNYQLAIPKKQ VETMEETEEDEGD   VPSQEP  SEVPQQH PQRVSFPLAKRPK+T
Sbjct: 121 PNYQLAIPKKQPVETMEETEEDEGDH-AVPSQEP-GSEVPQQHTPQRVSFPLAKRPKIT 177

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BLAST of MELO3C024352 vs. ExPASy Swiss-Prot
Match: Q9SYH2 (Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.2e-67
Identity = 132/181 (72.93%), Postives = 149/181 (82.32%), Query Frame = 0


Query: 22  DGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 81
           +G+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 82  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 141
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 142 YQLAIPKKQAVETMEETEEDE------GDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRP 197
           YQL IPKK      EETE+DE              Q+  +S++P Q  PQRVSFPL++RP
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQ-TPQRVSFPLSRRP 183

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BLAST of MELO3C024352 vs. ExPASy Swiss-Prot
Match: Q17QQ4 (Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 63/127 (49.61%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 25  EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 84
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 85  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 144
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 145 AIPKKQA 152
              +K+A
Sbjct: 130 KSLQKKA 136

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BLAST of MELO3C024352 vs. ExPASy Swiss-Prot
Match: Q16594 (Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 63/127 (49.61%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 25  EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 84
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 85  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 144
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 145 AIPKKQA 152
              +K+A
Sbjct: 130 KSLQKKA 136

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BLAST of MELO3C024352 vs. ExPASy Swiss-Prot
Match: Q8VI33 (Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-30
Identity = 63/127 (49.61%), Postives = 91/127 (71.65%), Query Frame = 0


Query: 25  EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 84
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA KA +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDAD 69

Query: 85  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 144
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 145 AIPKKQA 152
              +K+A
Sbjct: 130 KSLQKKA 136

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BLAST of MELO3C024352 vs. ExPASy Swiss-Prot
Match: Q5BKE0 (Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN=Taf9 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.3e-30
Identity = 62/127 (48.82%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 25  EELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAIDCD 84
           + +P+DA+++  +LK MG+ +YEPRVI+Q LE  +RYV  +L DA++YS HA K  +D D
Sbjct: 10  KSMPKDAQMMAQILKDMGITEYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPTVDAD 69

Query: 85  DVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPNYQL 144
           DV+LAIQ + + SF+ PPPR+ LL++AR RN+ PLP      G  LPPD+  L +PNY+L
Sbjct: 70  DVRLAIQCRADQSFTSPPPRDFLLDIARQRNQTPLPLIKPYSGPRLPPDRYCLTAPNYRL 129

Query: 145 AIPKKQA 152
              +K+A
Sbjct: 130 KSLQKKA 136

[Close]

BLAST of MELO3C024352 vs. ExPASy TrEMBL
Match: A0A1S4E4D8 (transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.0e-105
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MPHLTTSSAPDIFYVVSKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYR 60
           MPHLTTSSAPDIFYVVSKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYR
Sbjct: 1   MPHLTTSSAPDIFYVVSKEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYR 60

Query: 61  YVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLP 120
           YVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLP
Sbjct: 61  YVVDVLTDAQVYSEHAGKAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLP 120

Query: 121 RSIGGPGIALPPDQDTLLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQ 180
           RSIGGPGIALPPDQDTLLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQ
Sbjct: 121 RSIGGPGIALPPDQDTLLSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQ 180

Query: 181 QHAPQRVSFPLAKRPKLT 199
           QHAPQRVSFPLAKRPKLT
Sbjct: 181 QHAPQRVSFPLAKRPKLT 198

[Close]

BLAST of MELO3C024352 vs. ExPASy TrEMBL
Match: A0A1S3CGN5 (transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500691 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.1e-94
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79
           MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 199
           PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of MELO3C024352 vs. ExPASy TrEMBL
Match: A0A5A7UW56 (Transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001260 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.1e-94
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79
           MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 199
           PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 179

[Close]

BLAST of MELO3C024352 vs. ExPASy TrEMBL
Match: A0A0A0KAU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.3e-91
Identity = 174/179 (97.21%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 20  MSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 79
           MS+GDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA
Sbjct: 1   MSEGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKA 60

Query: 80  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 139
           AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS
Sbjct: 61  AIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLS 120

Query: 140 PNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKLT 199
           PNYQLAIPKKQAVETMEETEEDEGDDTV PSQEPSSSEVPQQHA QRVSFPLAKR K+T
Sbjct: 121 PNYQLAIPKKQAVETMEETEEDEGDDTVAPSQEPSSSEVPQQHASQRVSFPLAKRSKIT 179

[Close]

BLAST of MELO3C024352 vs. ExPASy TrEMBL
Match: A0A6J1GPP8 (transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN=LOC111456006 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 7.0e-86
Identity = 167/181 (92.27%), Postives = 174/181 (96.13%), Query Frame = 0


Query: 18  KEMSDGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG 77
           KEMS+GDE+LPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG
Sbjct: 39  KEMSEGDEDLPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAG 98

Query: 78  KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL 137
           KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL
Sbjct: 99  KAAIDCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTL 158

Query: 138 LSPNYQLAIPKKQAVETMEETEEDEGDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRPKL 197
           LSPNYQLAIP+K+ VE MEETEEDEG D  VPSQEP S+EVPQQH PQRVSFPL+KRPK+
Sbjct: 159 LSPNYQLAIPRKRQVEAMEETEEDEGVD-AVPSQEP-STEVPQQHTPQRVSFPLSKRPKI 217

Query: 198 T 199
           T
Sbjct: 219 T 217

[Close]

BLAST of MELO3C024352 vs. TAIR 10
Match: AT1G54140.1 (TATA binding protein associated factor 21kDa subunit )

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-68
Identity = 132/181 (72.93%), Postives = 149/181 (82.32%), Query Frame = 0


Query: 22  DGDEELPRDAKIVKTLLKSMGVEDYEPRVIHQFLELWYRYVVDVLTDAQVYSEHAGKAAI 81
           +G+E++PRDAKIVK+LLKSMGVEDYEPRVIHQFLELWYRYVV+VLTDAQVYSEHA K  I
Sbjct: 4   EGEEDVPRDAKIVKSLLKSMGVEDYEPRVIHQFLELWYRYVVEVLTDAQVYSEHASKPNI 63

Query: 82  DCDDVKLAIQSKVNFSFSQPPPREVLLELARNRNKIPLPRSIGGPGIALPPDQDTLLSPN 141
           DCDDVKLAIQSKVNFSFSQPPPREVLLELA +RNKIPLP+SI GPG+ LPP+QDTLLSPN
Sbjct: 64  DCDDVKLAIQSKVNFSFSQPPPREVLLELAASRNKIPLPKSIAGPGVPLPPEQDTLLSPN 123

Query: 142 YQLAIPKKQAVETMEETEEDE------GDDTVVPSQEPSSSEVPQQHAPQRVSFPLAKRP 197
           YQL IPKK      EETE+DE              Q+  +S++P Q  PQRVSFPL++RP
Sbjct: 124 YQLVIPKKSVSTEPEETEDDEEMTDPGQSSQEQQQQQQQTSDLPSQ-TPQRVSFPLSRRP 183

The following BLAST results are available for this feature:

BLAST of MELO3C024352 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902840.1	2.2e-105	100.00	PREDICTED: transcription initiation factor TFIID subunit 9 isoform X1 [Cucumis m...	[more]
XP_008462302.1	6.5e-94	100.00	PREDICTED: transcription initiation factor TFIID subunit 9 isoform X2 [Cucumis m...	[more]
XP_011659620.1	6.7e-91	97.21	transcription initiation factor TFIID subunit 9 [Cucumis sativus] >KGN45487.1 hy...	[more]
XP_022953465.1	1.4e-85	92.27	transcription initiation factor TFIID subunit 9 [Cucurbita moschata]	[more]
XP_038896108.1	2.5e-85	93.85	transcription initiation factor TFIID subunit 9 [Benincasa hispida] >XP_03889610...	[more]

BLAST of MELO3C024352 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYH2	3.2e-67	72.93	Transcription initiation factor TFIID subunit 9 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q17QQ4	1.4e-30	49.61	Transcription initiation factor TFIID subunit 9 OS=Bos taurus OX=9913 GN=TAF9 PE...	[more]
Q16594	1.4e-30	49.61	Transcription initiation factor TFIID subunit 9 OS=Homo sapiens OX=9606 GN=TAF9 ...	[more]
Q8VI33	1.4e-30	49.61	Transcription initiation factor TFIID subunit 9 OS=Mus musculus OX=10090 GN=Taf9...	[more]
Q5BKE0	5.3e-30	48.82	Transcription initiation factor TFIID subunit 9 OS=Rattus norvegicus OX=10116 GN...	[more]

BLAST of MELO3C024352 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E4D8	1.0e-105	100.00	transcription initiation factor TFIID subunit 9 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A1S3CGN5	3.1e-94	100.00	transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo OX=36...	[more]
A0A5A7UW56	3.1e-94	100.00	Transcription initiation factor TFIID subunit 9 isoform X2 OS=Cucumis melo var. ...	[more]
A0A0A0KAU5	3.3e-91	97.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G449470 PE=3 SV=1	[more]
A0A6J1GPP8	7.0e-86	92.27	transcription initiation factor TFIID subunit 9 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of MELO3C024352 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54140.1	2.2e-68	72.93	TATA binding protein associated factor 21kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003162	Transcription initiation factor TAFII31	PFAM	PF02291	TFIID-31kDa	coord: 25..144 e-value: 8.9E-47 score: 158.2
IPR003162	Transcription initiation factor TAFII31	CDD	cd07979	TAF9	coord: 28..144 e-value: 1.62608E-65 score: 195.528
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 28..95 e-value: 1.2E-30 score: 107.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 28..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..183
None	No IPR available	PANTHER	PTHR48068	TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR	coord: 19..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024352.1	MELO3C024352.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
molecular_function	GO:0046982	protein heterodimerization activity