MELO3C024233 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024233
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	serine-rich protein-related
Location	chr01: 34245771 .. 34246278 (+)
RNA-Seq Expression	MELO3C024233
Synteny	MELO3C024233

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACTAATTCCAAAAATCAAACACTTCCCTCTCTTGCTCCCCTTTTTAGCCATTTACAAACCGTCTTCTTAAAGAAAGAAAAAGAAATGTGTTATCCAACCCATCCCTTTCACAGAGCCACCGCCTTCGGCTTTGCCAGCCACGGAAGGCCGGTTGTAGCGGCGGCGGAAGAGGCCGTCCGGCAGCAGAAAAGTGGCGGTGGATATAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCAGATCGTCAAAAGCAAAACCCAACATAGTTTAACTCTTGAAATATTTGTATAAATTCATATAATATATACATACACAAAACTTTAAGTTATGTATAGATGAAATATGTGGGTAGGCTCTGTTTTTTAAATTCAATAGGCTGCAGCTTGATTTGCTGTGTTGGTGGGTTAGAATTGTGTTGAAATCAACTAGAAAATTAGAAAGAAAGTGTTTTTATTTA

mRNA sequence

TACTAATTCCAAAAATCAAACACTTCCCTCTCTTGCTCCCCTTTTTAGCCATTTACAAACCGTCTTCTTAAAGAAAGAAAAAGAAATGTGTTATCCAACCCATCCCTTTCACAGAGCCACCGCCTTCGGCTTTGCCAGCCACGGAAGGCCGGTTGTAGCGGCGGCGGAAGAGGCCGTCCGGCAGCAGAAAAGTGGCGGTGGATATAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCAGATCGTCAAAAGCAAAACCCAACATAGTTTAACTCTTGAAATATTTGTATAAATTCATATAATATATACATACACAAAACTTTAAGTTATGTATAGATGAAATATGTGGGTAGGCTCTGTTTTTTAAATTCAATAGGCTGCAGCTTGATTTGCTGTGTTGGTGGGTTAGAATTGTGTTGAAATCAACTAGAAAATTAGAAAGAAAGTGTTTTTATTTA

Coding sequence (CDS)

ATGTGTTATCCAACCCATCCCTTTCACAGAGCCACCGCCTTCGGCTTTGCCAGCCACGGAAGGCCGGTTGTAGCGGCGGCGGAAGAGGCCGTCCGGCAGCAGAAAAGTGGCGGTGGATATAAGTGTATTTGCTCGCCGACGACTCACCCAGGTTCTTTCAAATGTAGATTTCATCAAGGAGATTATAAATGGGTTAGTCGGTCCAGATCGTCAAAAGCAAAACCCAACATAGTTTAA

Protein sequence

MCYPTHPFHRATAFGFASHGRPVVAAAEEAVRQQKSGGGYKCICSPTTHPGSFKCRFHQGDYKWVSRSRSSKAKPNIV

Homology

[Close]

BLAST of MELO3C024233 vs. NCBI nr
Match: KGN45357.1 (hypothetical protein Csa_016243 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 2.5e-33
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MCYPTHPFHRATAFGFASHGRPVVAAAEEAVRQQKSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPT PFHR TAF FASHGR VVAA EEAVRQQ+SGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSRSSKAKPNIV 79
          DYKWVSRS +SKAK NIV
Sbjct: 61 DYKWVSRSTTSKAKTNIV 78

[Close]

BLAST of MELO3C024233 vs. NCBI nr
Match: PIN06441.1 (hypothetical protein CDL12_21010 [Handroanthus impetiginosus])

HSP 1 Score: 64.7 bits (156), Expect = 4.0e-07
Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 1  MCYPTHPFHRATAFGFASHG---RPVVAAAEEAVRQQK-------------SGGGYK--C 60
          MCYP+  +    A+ FAS     R V  A E A R+Q+              GGG    C
Sbjct: 1  MCYPSGAYWEC-AYNFASRRLLVRAVATATEVAAREQQRANIGGGLAEGGGRGGGITKVC 60

Query: 61 ICSPTTHPGSFKCRFHQGDYKWVSRS 69
          +CSPT HPGSF+CR H G+Y+WV+R+
Sbjct: 61 VCSPTGHPGSFRCRHHHGEYQWVNRT 85

[Close]

BLAST of MELO3C024233 vs. NCBI nr
Match: CAA7406961.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 62.8 bits (151), Expect = 1.5e-06
Identity = 36/76 (47.37%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 1  MCYPTHPFHRATAFGFASHGRPVVAA------AEEAVRQQKSGGGYKCICSPTTHPGSFK 60
          MC+P   F  ATAF      RP  AA      A     ++  GG   CICSPT+HPGSF+
Sbjct: 1  MCFP--EFRPATAFPSLPPPRPYAAAVPDEGTAPPPPSREAEGG---CICSPTSHPGSFR 60

Query: 61 CRFHQGDYKWVSRSRS 71
          CR H+  YKWV R RS
Sbjct: 61 CRKHRRGYKWVGRRRS 71

[Close]

BLAST of MELO3C024233 vs. NCBI nr
Match: CAA0289105.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-06
Identity = 31/85 (36.47%), Postives = 41/85 (48.24%), Query Frame = 0


Query: 1  MCY--------PTHPFHRATAFGFASHGRPVVAAAEEAVRQQKSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T     +    V A A         GG  KC+CSP+ HP S
Sbjct: 1  MCYKIFLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSRSSKAKPNI 78
          FKCR+HQ +Y+W+  S SS +  ++
Sbjct: 61 FKCRYHQHEYQWLPSSSSSSSSSSL 85

[Close]

BLAST of MELO3C024233 vs. NCBI nr
Match: KAG7594965.1 (hypothetical protein ISN45_Aa01g036900 [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-06
Identity = 31/79 (39.24%), Postives = 39/79 (49.37%), Query Frame = 0


Query: 1  MCY--------PTHPFHRATAFGFASHGRPVVAAAEEAVRQQKSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T     +    V A+A         GG  KC+CSP+ HP S
Sbjct: 1  MCYKILPPLVIPPESFHENTTVAEVTTATEVEASAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSRSS 72
          FKCR+HQ +Y+W+  S SS
Sbjct: 61 FKCRYHQHEYQWLPSSSSS 79

[Close]

BLAST of MELO3C024233 vs. ExPASy TrEMBL
Match: A0A0A0KAE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446750 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.2e-33
Identity = 69/78 (88.46%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MCYPTHPFHRATAFGFASHGRPVVAAAEEAVRQQKSGGGYKCICSPTTHPGSFKCRFHQG 60
          MCYPT PFHR TAF FASHGR VVAA EEAVRQQ+SGGGYKCICSPTTHPGSFKCRFHQG
Sbjct: 1  MCYPTLPFHRPTAFSFASHGRSVVAAVEEAVRQQRSGGGYKCICSPTTHPGSFKCRFHQG 60

Query: 61 DYKWVSRSRSSKAKPNIV 79
          DYKWVSRS +SKAK NIV
Sbjct: 61 DYKWVSRSTTSKAKTNIV 78

[Close]

BLAST of MELO3C024233 vs. ExPASy TrEMBL
Match: A0A2G9GMB1 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21010 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 0


Query: 1  MCYPTHPFHRATAFGFASHG---RPVVAAAEEAVRQQK-------------SGGGYK--C 60
          MCYP+  +    A+ FAS     R V  A E A R+Q+              GGG    C
Sbjct: 1  MCYPSGAYWEC-AYNFASRRLLVRAVATATEVAAREQQRANIGGGLAEGGGRGGGITKVC 60

Query: 61 ICSPTTHPGSFKCRFHQGDYKWVSRS 69
          +CSPT HPGSF+CR H G+Y+WV+R+
Sbjct: 61 VCSPTGHPGSFRCRHHHGEYQWVNRT 85

[Close]

BLAST of MELO3C024233 vs. ExPASy TrEMBL
Match: A0A7I8LA55 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_13017639 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.4e-07
Identity = 36/76 (47.37%), Postives = 42/76 (55.26%), Query Frame = 0


Query: 1  MCYPTHPFHRATAFGFASHGRPVVAA------AEEAVRQQKSGGGYKCICSPTTHPGSFK 60
          MC+P   F  ATAF      RP  AA      A     ++  GG   CICSPT+HPGSF+
Sbjct: 1  MCFP--EFRPATAFPSLPPPRPYAAAVPDEGTAPPPPSREAEGG---CICSPTSHPGSFR 60

Query: 61 CRFHQGDYKWVSRSRS 71
          CR H+  YKWV R RS
Sbjct: 61 CRKHRRGYKWVGRRRS 71

[Close]

BLAST of MELO3C024233 vs. ExPASy TrEMBL
Match: A0A803LNB7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 23 VVAAAEEAVRQQKSGGGYKCICSPTTHPGSFKCRFHQGDYKWVSRSRSSKA 74
          VV   E A+ +   G   +C+CSPT+HPGSF+CR H+ DYKW S ++S +A
Sbjct: 35 VVVQREVAISRGNDGREGQCVCSPTSHPGSFRCRNHRSDYKWTSHAKSCEA 85

[Close]

BLAST of MELO3C024233 vs. ExPASy TrEMBL
Match: Q1G3Y9 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g52342 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 31/85 (36.47%), Postives = 41/85 (48.24%), Query Frame = 0


Query: 1  MCY--------PTHPFHRATAFGFASHGRPVVAAAEEAVRQQKSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T     +    V A A         GG  KC+CSP+ HP S
Sbjct: 1  MCYKILLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSRSSKAKPNI 78
          FKCR+HQ +Y+W+  S SS +  ++
Sbjct: 61 FKCRYHQHEYQWLPSSSSSSSSSSL 85

[Close]

BLAST of MELO3C024233 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 3.2e-10
Identity = 31/85 (36.47%), Postives = 41/85 (48.24%), Query Frame = 0


Query: 1  MCY--------PTHPFHRATAFGFASHGRPVVAAAEEAVRQQKSGGGYKCICSPTTHPGS 60
          MCY        P   FH  T     +    V A A         GG  KC+CSP+ HP S
Sbjct: 1  MCYKILLPLVIPPESFHENTPVAEVTVATDVEATAGHRSGGDGGGGKKKCVCSPSKHPRS 60

Query: 61 FKCRFHQGDYKWVSRSRSSKAKPNI 78
          FKCR+HQ +Y+W+  S SS +  ++
Sbjct: 61 FKCRYHQHEYQWLPSSSSSSSSSSL 85

[Close]

BLAST of MELO3C024233 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 19/42 (45.24%), Postives = 24/42 (57.14%), Query Frame = 0


Query: 18 SHGRPVVAAAEEAVRQQKSGGGYKCICSPTTHPGSFKCRFHQ 60
          SH    V      + +Q S     C+CSPTTHPGSF+CR H+
Sbjct: 20 SHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHR 61

[Close]

BLAST of MELO3C024233 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 46.2 bits (108), Expect = 1.4e-05
Identity = 19/42 (45.24%), Postives = 24/42 (57.14%), Query Frame = 0


Query: 18 SHGRPVVAAAEEAVRQQKSGGGYKCICSPTTHPGSFKCRFHQ 60
          SH    V      + +Q S     C+CSPTTHPGSF+CR H+
Sbjct: 20 SHFNSAVEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHR 61

[Close]

BLAST of MELO3C024233 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 43.9 bits (102), Expect = 6.9e-05
Identity = 15/19 (78.95%), Postives = 18/19 (94.74%), Query Frame = 0


Query: 41 KCICSPTTHPGSFKCRFHQ 60
          KC+CSPTTHPGSF+C FH+
Sbjct: 70 KCLCSPTTHPGSFRCSFHR 88

[Close]

BLAST of MELO3C024233 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 9.0e-05
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 0


Query: 42 CICSPTTHPGSFKCRFHQGDYKWVSRSRSSKAKPNIV 79
          CICSPTTHPGSFKC+ H    +  S  R+   + NI+
Sbjct: 32 CICSPTTHPGSFKCKLH----RTPSLQRNKSVETNIL 64

The following BLAST results are available for this feature:

BLAST of MELO3C024233 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45357.1	2.5e-33	88.46	hypothetical protein Csa_016243 [Cucumis sativus]	[more]
PIN06441.1	4.0e-07	41.86	hypothetical protein CDL12_21010 [Handroanthus impetiginosus]	[more]
CAA7406961.1	1.5e-06	47.37	unnamed protein product [Spirodela intermedia]	[more]
CAA0289105.1	3.4e-06	36.47	unnamed protein product [Arabidopsis thaliana]	[more]
KAG7594965.1	3.4e-06	39.24	hypothetical protein ISN45_Aa01g036900 [Arabidopsis thaliana x Arabidopsis areno...	[more]

BLAST of MELO3C024233 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C024233 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE1	1.2e-33	88.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446750 PE=4 SV=1	[more]
A0A2G9GMB1	2.0e-07	41.86	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21010 P...	[more]
A0A7I8LA55	7.4e-07	47.37	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_13017639 PE=4 SV...	[more]
A0A803LNB7	1.3e-06	49.02	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
Q1G3Y9	1.7e-06	36.47	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=At1g52342 PE=4 SV=1	[more]

BLAST of MELO3C024233 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52342.1	3.2e-10	36.47	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.1	1.4e-05	45.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G67910.2	1.4e-05	45.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G20370.1	6.9e-05	78.95	serine-rich protein-related	[more]
AT1G24577.1	9.0e-05	51.35	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132:SF72	OS01G0778900 PROTEIN	coord: 2..69
None	No IPR available	PANTHER	PTHR33132	OSJNBB0118P14.9 PROTEIN	coord: 2..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024233.1	MELO3C024233.1	mRNA