MELO3C024161 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024161
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	glycine-rich cell wall structural protein 1-like
Location	chr01: 4714611 .. 4715276 (-)
RNA-Seq Expression	MELO3C024161
Synteny	MELO3C024161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAACAACACACACAAGTATAAGTCTCTTAGACGAAGAATTAAGAAGAAAATGGCCAAATTGTTCATGGCTTTGCTTTTGGCTCTTATAGCCACTCATGCCCTAGCTAGACCTATTACGCCTGGCACCACCTTCGACGACCAAAAGAACTTCCTCACTTATGGTGGTCTCGGTGGCTACTCTGGCATTGGCAGCAACGGTCTCCCGTTTGGTGGGGTGGGAGGTGTCGTTGGAGGAACTGGCCCCGGTGGTCTCGGTGGTGGCCTCGGTGGCGCTACTGGAATTGGTGGACTTGGAGGCTTGGGAGGTGGAGCTGCTGGTGGACTCGGAAGCGGAGTTGGTGGAGGTGCTGGTGGTGGAGTTGGTGTTGGCGGTGGTTCTGGTCTTACTAATCCTTGAAGTTATTTTAATCTCGTTTTATTTCGACTCAAAATGTTGTTAGAGTGAAGTTTAGTTATTTTGCCTTAAGTGGACTAGTATGAATCTCATGCATTTGTTATGTTTTCTTTCTATAGTTCATGAAAATTTCATTAAATTTTATTGTTTGATGGTGTGTTAATTGTACGTTGTTGGTTAAGTTGCCTATGTTTTTGTTAGGAACAGATCACTAAAACGTTTCAATTGAGAATTAACCTGATTAATCAATAAGAATTGAGAACCTATAATC

mRNA sequence

CCAACAACACACACAAGTATAAGTCTCTTAGACGAAGAATTAAGAAGAAAATGGCCAAATTGTTCATGGCTTTGCTTTTGGCTCTTATAGCCACTCATGCCCTAGCTAGACCTATTACGCCTGGCACCACCTTCGACGACCAAAAGAACTTCCTCACTTATGGTGGTCTCGGTGGCTACTCTGGCATTGGCAGCAACGGTCTCCCGTTTGGTGGGGTGGGAGGTGTCGTTGGAGGAACTGGCCCCGGTGGTCTCGGTGGTGGCCTCGGTGGCGCTACTGGAATTGGTGGACTTGGAGGCTTGGGAGGTGGAGCTGCTGGTGGACTCGGAAGCGGAGTTGGTGGAGGTGCTGGTGGTGGAGTTGGTGTTGGCGGTGGTTCTGGTCTTACTAATCCTTGAAGTTATTTTAATCTCGTTTTATTTCGACTCAAAATGTTGTTAGAGTGAAGTTTAGTTATTTTGCCTTAAGTGGACTAGTATGAATCTCATGCATTTGTTATGTTTTCTTTCTATAGTTCATGAAAATTTCATTAAATTTTATTGTTTGATGGTGTGTTAATTGTACGTTGTTGGTTAAGTTGCCTATGTTTTTGTTAGGAACAGATCACTAAAACGTTTCAATTGAGAATTAACCTGATTAATCAATAAGAATTGAGAACCTATAATC

Coding sequence (CDS)

ATGGCCAAATTGTTCATGGCTTTGCTTTTGGCTCTTATAGCCACTCATGCCCTAGCTAGACCTATTACGCCTGGCACCACCTTCGACGACCAAAAGAACTTCCTCACTTATGGTGGTCTCGGTGGCTACTCTGGCATTGGCAGCAACGGTCTCCCGTTTGGTGGGGTGGGAGGTGTCGTTGGAGGAACTGGCCCCGGTGGTCTCGGTGGTGGCCTCGGTGGCGCTACTGGAATTGGTGGACTTGGAGGCTTGGGAGGTGGAGCTGCTGGTGGACTCGGAAGCGGAGTTGGTGGAGGTGCTGGTGGTGGAGTTGGTGTTGGCGGTGGTTCTGGTCTTACTAATCCTTGA

Protein sequence

MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVVGGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP

Homology

[Close]

BLAST of MELO3C024161 vs. NCBI nr
Match: XP_008462002.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 2.6e-42
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 116
           GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of MELO3C024161 vs. NCBI nr
Match: KAA0050569.1 (glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa] >TYK18808.1 glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 7.5e-42
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLF+ALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV
Sbjct: 1   MAKLFIALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 116
           GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of MELO3C024161 vs. NCBI nr
Match: XP_011659167.2 (glycine-rich protein 5 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 2.5e-37
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLF+ALLLAL+ATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGG+GGV+
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 116
           GGTGPGGLGGGLGGATGIGGLGG GGGAAGGLGS    GAGGGVG+GGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGS----GAGGGVGIGGGSGLTNP 111

[Close]

BLAST of MELO3C024161 vs. NCBI nr
Match: KAE8646238.1 (hypothetical protein Csa_015546 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 7.5e-34
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLF+ALLLAL+ATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGG+GGV+
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 116
           GGTGPGGLGGGLGGATGI       GGAAGGLGS    GAGGGVG+GGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGI-------GGAAGGLGS----GAGGGVGIGGGSGLTNP 104

[Close]

BLAST of MELO3C024161 vs. NCBI nr
Match: XP_038899239.1 (glycine-rich protein 5-like [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 1.8e-32
Identity = 102/116 (87.93%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLFMALLLAL+ATHALARP TP TTF+DQKNFLTYGGLG YSGIGSNGLPFGGVGG +
Sbjct: 1   MAKLFMALLLALVATHALARP-TPDTTFNDQKNFLTYGGLGAYSGIGSNGLPFGGVGGAM 60

Query: 61  GGTG-PGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 116
           GGTG  GGLGGGLGGATG+GGLGG GGGAAGGLG G GGGAG GVGVGGGSGLTNP
Sbjct: 61  GGTGLGGGLGGGLGGATGLGGLGGSGGGAAGGLGGGAGGGAGAGVGVGGGSGLTNP 115

[Close]

BLAST of MELO3C024161 vs. ExPASy TrEMBL
Match: A0A1S3CFV5 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103500476 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 116
           GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of MELO3C024161 vs. ExPASy TrEMBL
Match: A0A5D3D5H6 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00260 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.6e-42
Identity = 114/115 (99.13%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLF+ALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV
Sbjct: 1   MAKLFIALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 116
           GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of MELO3C024161 vs. ExPASy TrEMBL
Match: A0A0A0K6P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336480 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37
Identity = 105/115 (91.30%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLF+ALLLAL+ATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGG+GGV+
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 116
           GGTGPGGLGGGLGGATGIGGLGG GGGAAGGLGS    GAGGGVG+GGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGS----GAGGGVGIGGGSGLTNP 111

[Close]

BLAST of MELO3C024161 vs. ExPASy TrEMBL
Match: A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.3e-23
Identity = 94/132 (71.21%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLFMALLLAL+ATHALARP     TF DQKNFLTYGG+GGYSGIGSNGLPFGGVGG +
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTG-PGGLGGGLGGATGI-GGLGGLG---------GGAAGGLGSGVGGGAGGGV----- 116
           GG G  GGLGGGLGGATGI GGLGGLG         GG  GGLG G+GGG GGG+     
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTGGLGGGLGGGLGGGLGGGLG 120

[Close]

BLAST of MELO3C024161 vs. ExPASy TrEMBL
Match: A0A6J1KVV3 (acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.2e-23
Identity = 91/135 (67.41%), Postives = 96/135 (71.11%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60
           MAKLFMA+LLAL+ATHALARP     TF DQKNFLTYGGLGGYSGIGSNGLPFGG+GG V
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGLGGGLGGATGIGG-----LGGLGGGAAGGLGSG------------------VG 113
           GGTGPGG+GGG+GG  G GG      GGLGGG  GGLG G                  VG
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTVG 120

[Close]

BLAST of MELO3C024161 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-07
Identity = 66/114 (57.89%), Postives = 72/114 (63.16%), Query Frame = 0


Query: 1   MAKLFMALLLALIATHAL---ARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVG 60
           MAK F  + L      AL   AR +  G    DQKN+L YG  GGYSG+G NGLPFGGVG
Sbjct: 1   MAKWFFTIFLVFALASALACGARNVPVG--LSDQKNYLGYG--GGYSGVGDNGLPFGGVG 60

Query: 61  GVVGGTGPGGLG-GGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGS 111
           G V G G G LG GG GGA G G  GGLGGGA  GLG G+GGG+G G G  GGS
Sbjct: 61  GGVSGPG-GNLGYGGFGGAGG-GLGGGLGGGAGSGLGGGLGGGSGIGAGTSGGS 108

The following BLAST results are available for this feature:

BLAST of MELO3C024161 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462002.1	2.6e-42	100.00	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]	[more]
KAA0050569.1	7.5e-42	99.13	glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa] >TYK...	[more]
XP_011659167.2	2.5e-37	91.30	glycine-rich protein 5 [Cucumis sativus]	[more]
KAE8646238.1	7.5e-34	86.09	hypothetical protein Csa_015546 [Cucumis sativus]	[more]
XP_038899239.1	1.8e-32	87.93	glycine-rich protein 5-like [Benincasa hispida]	[more]

BLAST of MELO3C024161 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C024161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFV5	1.2e-42	100.00	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3D5H6	3.6e-42	99.13	Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0K6P3	1.2e-37	91.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336480 PE=4 SV=1	[more]
A0A5A7U5T7	1.3e-23	71.21	Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94...	[more]
A0A6J1KVV3	2.2e-23	67.41	acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1	[more]

BLAST of MELO3C024161 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29030.1	2.9e-07	57.89	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..111
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024161.1	MELO3C024161.1	mRNA