MELO3C024100 (gene) Melon (DHL92) v4

Overview
NameMELO3C024100
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr01: 9156742 .. 9161186 (+)
RNA-Seq ExpressionMELO3C024100
SyntenyMELO3C024100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAGCGGCAAAACACCTTAGCAGCAAAACACTTCGCATAAAATTTCATATTCTCCCTGCCTTTTTCACTTTGCGGCAGAACACCTTAGTGGCAAAACACCATAGCTTTACTTTGTTGTCTTCTCCTTGAAGTCAATAAATTTATTACCCTGATTTTTCTCTTCTTATATGACTTTCAATGCCGGCTCGACCAAATCTTGGATGGCTCTGGTTCTTAAAAGTTTGAGTTCAATCGATTGGGTATGTCGTAGGGCTTGAAATTAGATGATAAGAACTAGACTTATGTACTTCGAAGGACTGCAAAAATAATCCATTTTCTCATAAGCTCGACTTTTATAAGGGTCCGGTTTGAGAGGGGCAAAGAACCCACGTAGAGGTTACAGAGCAAAGCGACTCTACAATCAGTCTATTATGCCTCTAAAACCTTTTAGGCACGACGCATTCCCTTTGGCTATATAATTGTGCGGTTTCTGGAAATTGCAAACCCTTAGCAGCCCTCTTGCTTCATAGGAATTGAACCACCCTGAATAAGCAAAGAGTTTGATGTTTATCTTCTAATGCTTAATAATATTTTGTTCTCCCATTAATGTTCTTAATTTGAAAGGTATAAAGTCTATATGTTAATGCCTTCTAATTTTGTTTTTCTCATAATAGGTTTCAAGACAGGAAATGAAGGAATGTATTATGGTATGAAAAATTACTTGGTTTTGAAGAATATAAGGTCGATCAAGGCCTCCTAGGAAGATCAAAATAATGCAATCCAAAGTAAGATAGTATTCTTATTCTTAATTATACTAGGGTTTTATCATAATTTGTGGGAATGATTCATCTTATATATATATATATTTTTCTTAATTAAATTGGAGACAATTATTTAGTGCATTGACAAATTTGAATTTTTGGTCTGTTCACAAGGAAGACAAGTACATATAAGATATTTTGCGACTATAATCGTGCAATTGAGTATTACTATCCTTAATTAATTACTGGTTTTTATCAGAATCAGAAATACATGAAAAAGAATTTAGTATTCTTATCTTACATTGATTTCTTGCTATACTATCTTTTTGTCTATCTGTACTTGAGTGCTACTCAAGTGGAGTAATATTTTTAGTATTCTGTTTTTGGAATTAGGTAGACTAATTTTGTCTAGGCTCATTACAACAAATATGATTTTCATCCATTTATAGCAAATATGGTTATCTCAATGGATTGGGCATGAAGAACTATATTGAATAATTTTGAGTTTGAAATTGTGATTTTCTTTCTCTATGTCGTTTGCGCTCCTGTTTCTGAATTTGGTCTATTCTAGGTTAACTTGGATTATATTTGTTCAAGTGATTGAAAACAATTGGGATCTTTACCTTCATCTTCTAGACGCAAACTATTCAGAAGGGTAATGAAGTAACACACTCAATTTTTTTCTTTTTTTTGTTATTATATATTTTGATATTAGAAGAAATAATAATTTTTTACGTAACTATGGGGATGCTAATGTTATTTTTTCGTTTTGTATTAGTGATGCATTTAATGCTTTTGGCGTGGCTTGCTTTTGCTCTTGAAAGATGATTATTACTTGTCTTGGCCTTATTTAGAAGCTTCTTAATTAAAACAATGAGGTTGATGTTCTTGTTGATTTGTTCACATTATATTACAAACCAGTTTGATCTCATATTTGTATTAATGGTTGAACCAGAACACAAATGAGGACCTAATTGACTATGTTATCGCATATCTTACTAGATTTCATATGAAAATCCTTTTTTCTAGGTGTTTGCTAGTTATTAAAGATATGCAAACAAGACTTTTATTACAATATAGCTTTTGGATTAATCCACGTTCCAAGATGATTCATTTTTTCATTTACTAAAAGAACAACATATAGAGACTTTGTAAAAGGAGAAAACCGAATCAAAGGTAAGAATTTAAGAAAATTTTCAAGATTCTATGGATTGCATAAGATCTCTAGAATCCTTTGATTAGTGGGATTAAAAATTCCTGACTGTTATGGTGTGTTTCATTGATAGTTTTCATAGTTTGTTGTAAAGCTAGAATTCTACTAGTTGTTGGTGTTTACCGAGCTGTGTTTCTTGCTGTTAGGGTGAGTGTGTAGTGAATGCATTATGGAGTAAGTGCTGAGAGTTGTAGTGTCCTTTACTGTTATAATAGTTCATTGTCTTATTTTATATCCTTTTCTATTCAATTCCACAATTTCTCTTCAATGTCGAGACTTTTAACGGTTATGGTTGTTTATTGATGATGACAATGACTTTAAGTGAGACAACATTCTTTTTCGTTGATCAACAGACAATGAAGACACTTCTGTGATGACTTGGCTTAGGGTTCTTCAAAAAGCCAAGTTTAGGTAATCTCTACCTATGTACTCTTTTTTCTTTTTTCCAAAGTGTACTGTATTTGATCAATGTTTAGTTCATTTTCTACTACTTTTGAGCCTTCCTATTATAATATGGATGATTAAATAGTAGTTCTTTTTTTAATATTATCTCTTACATTTTTTTTTACCTTTAGATAACTAAGCAAAGCTCAATCTTGTTTCTTTCCATTATATAACTTAAAGTTGCATAAAAGAAAAAATGTATAAATTCTCATTATTGATTTCATGTTTAAAGTCGGCAATTCAATTGAGGTTTACTTCATGGTGGTGTTAGACTCTTGGGTATGGAGCTTGTATTGAGAGGTTTTTCGATTACTGAATTATGTAAAATCTGGTAAATCTCAATAGTTTTGGAGTTCTTTTTTTTTTTTATTTACTTTTTATTCTACGGGTAATTTGGTGTTTTATTTTGACCAAGTTATCTTCTGCTATTTACATTGAAACATTATGTAATGATAATAGTTATTTGTTTCATTATCATTTAAATGAGGATCTTTGCACCAACCAATTAAAAAGTTGTGTTAATTTGTTATTGTTGCTCATGTAGGTTGAACCATTTGATTATTTGAAAGTTGTTGCTTTGCCCGACTACGATAAAGACGATAGGAGTGTTGGACAGGTCCCACTACATCGTAGAGCTAGTAATTGTTAGTAGTACTGGGTGTGCCCTACACAATATAGATTTGTCATGTTAGTTAAAATTTTTAATATACTTGATGTGCCTTGCTAGATTTTAGTGACGTACTTGCTGAGCATTTGAGAAAACTGTTATTATTACACATTTATATTTAGCATTTGGTTAAACAAATTAATATGTTTAAGGTTTATCATGTGCTCTAATTTGAAGATTTACAGTTTAAAATTTAGTCATTCACTAGGCTTATAGCTTACCCTTTCAAAATGTTTTCCTACTTTCCAGGTAGAGATCGATCTTTCGATGCTTGATAGGTTGCCTTAATTTGCTGAAAGCTCCCAGATTGATTACTAGTATATGGGTGGAGTTGTAAATCTGAGTCTGGTTTGTTATGTTGTAAATGTCTTTTTAAGAATTAGATAATTTACACTTTGTGCCAGCTTAAGGAGTTGTGGTTGTTTAAACCCTAATTGGATATGTGTTTTTTGTTATGATGTCACTATCAGGATTTTTCCCAAAAGTGATTTATTTCAGGGCTGCACTTCATGTATGTCTATGGATTATCTAGGATCCTCTATGTTGTGTTCCATGTAAAGTATTTTGTATAGAAGAGTAGCATGTTTATCGGGTTCAAGGGTTTAGTAGAGTTGGTAGGTGTCGTTAGAGGAGGACGACATCAATCGACTTTGCACTATCTTTTTGACTAAGCTAGTAGGTAGTTCGAGTGGGAGTATGACAGTTACTATCAGTGGTTGAGTATGAGAGAAAGTATACTAAGCCCTACCAGTATGTTGATGTTATAATAGCATTTAAGAGTGACAGATGTAGAAGGTTTGAGAAGGGTTTCCAGGAGGAGATCCATAACCCAGTTATGACTATAGCAAAATGGACCAACTTCTCCCAGTTTGTAGAAACAACTTTGTGAGTAGAGTAGAGCATAGATGGACTAAGGCTAATGATGGAGCCTTGTAAAGGGGTTTCTACTGTGGCTCCAAGAGCTAAGATCAAAGGAGATACACACTTGGTGTATCAGGTAAGTGAGATTTGAATGGCCCTTCTCGTGGTTGGTTCTCTAGGTAGCACAGTTCAGGGAGTACCTTTTAGAGGCAGAGTCAAAGGACTCTTAGTCAGTCGGCTAGATCGACGACTTTTTCTAGAGCAAGGCAAGTGTCTCTAGTTGGTGCAGCATCAAAGTCATGTCTTGTTGGGGTGGATGTGTTCTACCACTACAAGTAGGTAGGTCACTGTAAGAGAGATTGCTCACAGTTGAGAGTAGAGATACAGAGCAACCAGAGGGTTGAGTCTTGGAGAATAGAGCAGCTGAAAACTTCAGAGGCTGGAGGAGAGAAGACTAATGGGTCGAAGCAGATGGAGTTGTGGGAAGGCCTTACCAACAGGGCAAGGTGTACGCCATGA

mRNA sequence

CTTAGCGGCAAAACACCTTAGCAGCAAAACACTTCGCATAAAATTTCATATTCTCCCTGCCTTTTTCACTTTGCGGCAGAACACCTTAGTGGCAAAACACCATAGCTTTACTTTGTTGTCTTCTCCTTGAAGTCAATAAATTTATTACCCTGATTTTTCTCTTCTTATATGACTTTCAATGCCGGCTCGACCAAATCTTGGATGGCTCTGGTTCTTAAAAGTTTGAGTTCAATCGATTGGGTTTCAAGACAGGAAATGAAGGAATGTATTATGGTTGAACCATTTGATTATTTGAAAGTTGTTGCTTTGCCCGACTACGATAAAGACGATAGGAGTGTTGGACAGGTCCCACTACATCGTAGAGCTAGATTTTTCCCAAAAGTGATTTATTTCAGGGCTGCACTTCATAGCATAGATGGACTAAGGCTAATGATGGAGCCTTGTAAAGGGGTTTCTACTGTGGCTCCAAGAGCTAAGATCAAAGGAGATACACACTTGGTGTATCAGGTAGGTCACTGTAAGAGAGATTGCTCACAGTTGAGAGTAGAGATACAGAGCAACCAGAGGGTTGAGTCTTGGAGAATAGAGCAGCTGAAAACTTCAGAGGCTGGAGGAGAGAAGACTAATGGGTCGAAGCAGATGGAGTTGTGGGAAGGCCTTACCAACAGGGCAAGGTGTACGCCATGA

Coding sequence (CDS)

ATGACTTTCAATGCCGGCTCGACCAAATCTTGGATGGCTCTGGTTCTTAAAAGTTTGAGTTCAATCGATTGGGTTTCAAGACAGGAAATGAAGGAATGTATTATGGTTGAACCATTTGATTATTTGAAAGTTGTTGCTTTGCCCGACTACGATAAAGACGATAGGAGTGTTGGACAGGTCCCACTACATCGTAGAGCTAGATTTTTCCCAAAAGTGATTTATTTCAGGGCTGCACTTCATAGCATAGATGGACTAAGGCTAATGATGGAGCCTTGTAAAGGGGTTTCTACTGTGGCTCCAAGAGCTAAGATCAAAGGAGATACACACTTGGTGTATCAGGTAGGTCACTGTAAGAGAGATTGCTCACAGTTGAGAGTAGAGATACAGAGCAACCAGAGGGTTGAGTCTTGGAGAATAGAGCAGCTGAAAACTTCAGAGGCTGGAGGAGAGAAGACTAATGGGTCGAAGCAGATGGAGTTGTGGGAAGGCCTTACCAACAGGGCAAGGTGTACGCCATGA

Protein sequence

MTFNAGSTKSWMALVLKSLSSIDWVSRQEMKECIMVEPFDYLKVVALPDYDKDDRSVGQVPLHRRARFFPKVIYFRAALHSIDGLRLMMEPCKGVSTVAPRAKIKGDTHLVYQVGHCKRDCSQLRVEIQSNQRVESWRIEQLKTSEAGGEKTNGSKQMELWEGLTNRARCTP
Homology
[Close]
BLAST of MELO3C024100 vs. NCBI nr
Match: KAA0048780.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK31553.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 6.4e-21
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 95  VSTVAPRAKIKGDTHLVYQVGHCKRDCSQLRVEIQSNQRVESWRIEQLKTSEAGGEKTNG 154
           V  V  R ++KG       V HCKRDCSQL+ EIQSNQRVESW IEQLKTSEAGGEKTNG
Sbjct: 13  VQGVPFRGRVKG-----LLVDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNG 72

Query: 155 SKQMELWEGLTNRARC 171
           SKQMELWE LTNRARC
Sbjct: 73  SKQMELWEDLTNRARC 83

[Close]
BLAST of MELO3C024100 vs. ExPASy TrEMBL
Match: A0A5A7U053 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00420 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-21
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 95  VSTVAPRAKIKGDTHLVYQVGHCKRDCSQLRVEIQSNQRVESWRIEQLKTSEAGGEKTNG 154
           V  V  R ++KG       V HCKRDCSQL+ EIQSNQRVESW IEQLKTSEAGGEKTNG
Sbjct: 13  VQGVPFRGRVKG-----LLVDHCKRDCSQLKAEIQSNQRVESWTIEQLKTSEAGGEKTNG 72

Query: 155 SKQMELWEGLTNRARC 171
           SKQMELWE LTNRARC
Sbjct: 73  SKQMELWEDLTNRARC 83

[Close]
BLAST of MELO3C024100 vs. ExPASy TrEMBL
Match: A0A5A7SGT3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00450 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.0e-03
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0 

Query: 90  EPCKGVSTVAPRAKIKGDTHLVYQVGHCKRDCSQLRVEIQSNQRVESWRIEQLKTSEAGG 149
           +P  G  +VA  ++    T    Q GH KRDC QLRV IQ +Q VES  IEQ + S A G
Sbjct: 24  KPPTGQESVATESR---RTPCCGQTGHFKRDCPQLRVAIQRDQGVESHTIEQPRISAAAG 83

Query: 150 EKTNGSKQ 158
           E T+G++Q
Sbjct: 84  EGTSGARQ 88

The following BLAST results are available for this feature:
BLAST of MELO3C024100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048780.16.4e-2175.00DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK31553.1 D... [more]
BLAST of MELO3C024100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C024100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U0533.1e-2175.00DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SGT31.0e-0347.06DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of MELO3C024100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024100.1MELO3C024100.1mRNA