MELO3C024094 (gene) Melon (DHL92) v4

Overview


Name	MELO3C024094
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	extensin-like isoform X2
Location	chr01: 8965042 .. 8965992 (-)
RNA-Seq Expression	MELO3C024094
Synteny	MELO3C024094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAACCCAAGAGTTGTGGATATGCAAGGAAAAATTGGTCCTCCTATAATGGTCTCTCTTGTTATTTCCGTTTTGGTGGTAGCTCTAAGCCTATCGTATACAACTGTTCAAGCCTACCAAGATTCCTACTCTTCAACGCTTACCTTTAAGGATCATGACAAACACAAATCTCCACCCCCACCGTCTCGAAAGAAGTCTCCTCCACCGCCACCTCCGTCCAAAAGGAAGTCCCCCCCTCCACCACCACCAAAGAGAAATGAATATCTCTCACCTCCACCACCTCCAAAAAACACGATAACAAGTCACCTCCTCCTCCACCGCCAAAAGAGAAGACTCCTCCACGACCAAGAAAGTCTCCCCCTCCACCACCACCAAGAAAGCATGATAACAAGTCACCACCTCCACCACCACCAAGAAAGCGTGATAACAAGTCACCTCCACCACCGCCACCAAAGAAACACGAATATGACTCCTATCCTCCACCACCACCACCAAGGAAGCATAAGGACAAGTCCCCTCTTCACCACGATCCCCTCACAATTAATTAGGTCAATATAAGGAATTCTCATCGACTATAAACCAAAAGAAGGTGATATATTAAATAATACACAACTCAATCCATTACTCAAACATATGCGTACATCTCAACATGCAATATCTTACGTGAAGTTTTATGTTTCTTTTGCAGGAAAAAGAATAAAGAAGTGAAGAAGTATGTATTTAGGTCAACTAAAGAAAACAACTTAAAAGTGTAAAAAAGAAGGTTGTTTTCATCTATTTGCTATACCTATGATTCTACGTGTTTTCTACGTGTGTCTTTAGTATTCCGTTGATTAAATAAAAGTCCATCTTACTTTCGTGTGTTTCCTAGGGAAAAAAAGAATCAGCTCTTCTTATTCTTATGCGACACATGAAATATTAAATAGAAAATACGGTATAATTTTATGAG

mRNA sequence

AAGAAAACCCAAGAGTTGTGGATATGCAAGGAAAAATTGGTCCTCCTATAATGGTCTCTCTTGTTATTTCCGTTTTGGTGGTAGCTCTAAGCCTATCGTATACAACTGTTCAAGCCTACCAAGATTCCTACTCTTCAACGCTTACCTTTAAGGATCATGACAAACACAAATCTCCACCCCCACCGTCTCGAAAGAAGTCTCCTCCACCGCCACCTCCGTCCAAAAGGAAGTCCCCCCCTCCACCACCACCAAAGAGAAATGAATATCTCTCACCTCCACCACCTCCAAAAAACACGATAACAAGTCACCTCCTCCTCCACCGCCAAAAGAGAAGACTCCTCCACGACCAAGAAAGTCTCCCCCTCCACCACCACCAAGAAAGCATGATAACAAGTCACCACCTCCACCACCACCAAGAAAGCGTGATAACAAGTCACCTCCACCACCGCCACCAAAGAAACACGAATATGACTCCTATCCTCCACCACCACCACCAAGGAAGCATAAGGACAAGTCCCCTCTTCACCACGATCCCCTCACAATTAATTAGGTCAATATAAGGAATTCTCATCGACTATAAACCAAAAGAAGGAAAAAGAATAAAGAAGTGAAGAAGTATGTATTTAGGTCAACTAAAGAAAACAACTTAAAAGTGTAAAAAAGAAGGTTGTTTTCATCTATTTGCTATACCTATGATTCTACGTGTTTTCTACGTGTGTCTTTAGTATTCCGTTGATTAAATAAAAGTCCATCTTACTTTCGTGTGTTTCCTAGGGAAAAAAAGAATCAGCTCTTCTTATTCTTATGCGACACATGAAATATTAAATAGAAAATACGGTATAATTTTATGAG

Coding sequence (CDS)

ATGCAAGGAAAAATTGGTCCTCCTATAATGGTCTCTCTTGTTATTTCCGTTTTGGTGGTAGCTCTAAGCCTATCGTATACAACTGTTCAAGCCTACCAAGATTCCTACTCTTCAACGCTTACCTTTAAGGATCATGACAAACACAAATCTCCACCCCCACCGTCTCGAAAGAAGTCTCCTCCACCGCCACCTCCGTCCAAAAGGAAGTCCCCCCCTCCACCACCACCAAAGAGAAATGAATATCTCTCACCTCCACCACCTCCAAAAAACACGATAACAAGTCACCTCCTCCTCCACCGCCAAAAGAGAAGACTCCTCCACGACCAAGAAAGTCTCCCCCTCCACCACCACCAAGAAAGCATGATAACAAGTCACCACCTCCACCACCACCAAGAAAGCGTGATAACAAGTCACCTCCACCACCGCCACCAAAGAAACACGAATATGACTCCTATCCTCCACCACCACCACCAAGGAAGCATAAGGACAAGTCCCCTCTTCACCACGATCCCCTCACAATTAATTAGGTCAATATAA

Protein sequence

MQGKIGPPIMVSLVISVLVVALSLSYTTVQAYQDSYSSTLTFKDHDKHKSPPPPSRKKSPPPPPPSKRKSPPPPPPKRNEYLSPPPPPKNTITSHLLLHRQKRRLLHDQESLPLHHHQESMITSHHLHHHQESVITSHLHHRHQRNTNMTPILHHHHQGSIRTSPLFTTIPSQLIRSI

Homology

[Close]

BLAST of MELO3C024094 vs. NCBI nr
Match: KAA0068050.1 (hypothetical protein E6C27_scaffold4741G00020 [Cucumis melo var. makuwa] >TYK31538.1 hypothetical protein E5676_scaffold172G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 2.1e-35
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MQGKIGPPIMVSLVISVLVVALSLSYTTVQAYQDSYSSTLTFKDHDKHKSPPPPSRKKSP 60
          MQGKIGPPIMVSLVISVLVVALSLSYTTVQAYQDSYSSTLTFKDHDKHKSPPPPSRKKSP
Sbjct: 1  MQGKIGPPIMVSLVISVLVVALSLSYTTVQAYQDSYSSTLTFKDHDKHKSPPPPSRKKSP 60

Query: 61 PPPPPSKRKSPPPPPPKRNEYLSPPPPPK 90
          PPPPPSKRKSPPPPPPKRNEYLSPPPPPK
Sbjct: 61 PPPPPSKRKSPPPPPPKRNEYLSPPPPPK 89

[Close]

BLAST of MELO3C024094 vs. NCBI nr
Match: XP_011659754.2 (extensin-3-like [Cucumis sativus] >KAE8646189.1 hypothetical protein Csa_016540 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-16
Identity = 67/106 (63.21%), Postives = 74/106 (69.81%), Query Frame = 0


Query: 1   MQGKIGPPIMVSLVISVLVVALSLSY-TTVQAYQDSYSSTLTFKDHD------------- 60
           MQGK+GPP+M+SLVI+VLVVALSLSY TT QA++DSYSSTLTF DHD             
Sbjct: 1   MQGKMGPPVMLSLVIAVLVVALSLSYTTTAQAHRDSYSSTLTFNDHDHDHDHDHDHDHDH 60

Query: 61  ----KHKSPPPPSRKKSPPPPPPSKRKSPPPPPPKRNEYLSPPPPP 89
                H         KS PPPPP KRKSPPPPPPKR+EYLSPPPPP
Sbjct: 61  DHDHDHDHDHDHHHYKS-PPPPPYKRKSPPPPPPKRDEYLSPPPPP 105

[Close]

BLAST of MELO3C024094 vs. NCBI nr
Match: XP_022976650.1 (extensin-3-like [Cucurbita maxima])

HSP 1 Score: 57.0 bits (136), Expect = 1.9e-04
Identity = 52/101 (51.49%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 5  IGPP-IMVSLVISVLVVALSLSYTTVQAYQDSYS----------------STLTFKDHDK 64
          +GPP I+V LVI+V VVALS S TT + Y D YS                S    K  D+
Sbjct: 1  MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDE 60

Query: 65 HKSPPPPSRKKSPPPPPPSKRKSPPPPPPKRNEYLSPPPPP 89
          +KSPPPP  KKSPPPPPP ++K PPPP PK+    SPPPPP
Sbjct: 61 YKSPPPPEVKKSPPPPPP-RKKPPPPPAPKK----SPPPPP 96

[Close]

BLAST of MELO3C024094 vs. NCBI nr
Match: KAG6592192.1 (hypothetical protein SDJN03_14538, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 4.3e-04
Identity = 51/111 (45.95%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 7   PPIMVSLVISVLVVALSLSYTTVQAYQDSYS-----------------------STLTFK 66
           P I+V LVI+V VVALSLS T+ + Y + YS                       S    K
Sbjct: 4   PSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPRPPVKYSSPPPVKYSPPPPK 63

Query: 67  DHDKHKSPPPPSRKKSPP----PPPPSKRKSPPPPPPKRNEYLSPPPPPKN 91
             D++KSPPPPS KKSPP    PPPP  +KSPPPPPP++    SPPPP K+
Sbjct: 64  KDDEYKSPPPPSPKKSPPPKKTPPPPEVKKSPPPPPPRKK---SPPPPKKS 111

[Close]

BLAST of MELO3C024094 vs. NCBI nr
Match: XP_022936365.1 (extensin-3-like isoform X1 [Cucurbita moschata] >XP_022936368.1 extensin-3-like isoform X1 [Cucurbita moschata] >XP_022936371.1 extensin-3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 9.6e-04
Identity = 50/109 (45.87%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 7   PPIMVSLVISVLVVALSLSYTTVQAYQDSYS-----------------------STLTFK 66
           P I+V LVI+V VVALSLS T+ + Y + YS                       S    K
Sbjct: 4   PSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPPPPK 63

Query: 67  DHDKHKSPPPPSRKKSPP----PPPPSKRKSPPPPPPKRNEYLSPPPPP 89
             D++KSPPPPS KKSPP    PPPP  +KSPPPPPP++     PPPPP
Sbjct: 64  KDDEYKSPPPPSPKKSPPPKKTPPPPEVKKSPPPPPPRK----KPPPPP 108

[Close]

BLAST of MELO3C024094 vs. ExPASy TrEMBL
Match: A0A5A7VLF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00210 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.0e-35
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MQGKIGPPIMVSLVISVLVVALSLSYTTVQAYQDSYSSTLTFKDHDKHKSPPPPSRKKSP 60
          MQGKIGPPIMVSLVISVLVVALSLSYTTVQAYQDSYSSTLTFKDHDKHKSPPPPSRKKSP
Sbjct: 1  MQGKIGPPIMVSLVISVLVVALSLSYTTVQAYQDSYSSTLTFKDHDKHKSPPPPSRKKSP 60

Query: 61 PPPPPSKRKSPPPPPPKRNEYLSPPPPPK 90
          PPPPPSKRKSPPPPPPKRNEYLSPPPPPK
Sbjct: 61 PPPPPSKRKSPPPPPPKRNEYLSPPPPPK 89

[Close]

BLAST of MELO3C024094 vs. ExPASy TrEMBL
Match: A0A6J1IK20 (extensin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111476989 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.3e-05
Identity = 52/101 (51.49%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 5  IGPP-IMVSLVISVLVVALSLSYTTVQAYQDSYS----------------STLTFKDHDK 64
          +GPP I+V LVI+V VVALS S TT + Y D YS                S    K  D+
Sbjct: 1  MGPPSIIVHLVIAVCVVALSSSSTTAEGYDDYYSPPPPVKYSSPPPPAYYSPPPPKKDDE 60

Query: 65 HKSPPPPSRKKSPPPPPPSKRKSPPPPPPKRNEYLSPPPPP 89
          +KSPPPP  KKSPPPPPP ++K PPPP PK+    SPPPPP
Sbjct: 61 YKSPPPPEVKKSPPPPPP-RKKPPPPPAPKK----SPPPPP 96

[Close]

BLAST of MELO3C024094 vs. ExPASy TrEMBL
Match: A0A6J1FDF6 (extensin-3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443007 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-04
Identity = 50/109 (45.87%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 7   PPIMVSLVISVLVVALSLSYTTVQAYQDSYS-----------------------STLTFK 66
           P I+V LVI+V VVALSLS T+ + Y + YS                       S    K
Sbjct: 4   PSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPPPPK 63

Query: 67  DHDKHKSPPPPSRKKSPP----PPPPSKRKSPPPPPPKRNEYLSPPPPP 89
             D++KSPPPPS KKSPP    PPPP  +KSPPPPPP++     PPPPP
Sbjct: 64  KDDEYKSPPPPSPKKSPPPKKTPPPPEVKKSPPPPPPRK----KPPPPP 108

[Close]

BLAST of MELO3C024094 vs. ExPASy TrEMBL
Match: A0A6J1FDF9 (extensin-1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111443008 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-04
Identity = 50/109 (45.87%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 7   PPIMVSLVISVLVVALSLSYTTVQAYQDSYS-----------------------STLTFK 66
           P I+V LVI+V VVALSLS T+ + Y + YS                       S    K
Sbjct: 4   PSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPPPPK 63

Query: 67  DHDKHKSPPPPSRKKSPP----PPPPSKRKSPPPPPPKRNEYLSPPPPP 89
             D++KSPPPPS KKSPP    PPPP  +KSPPPPPP++     PPPPP
Sbjct: 64  KDDEYKSPPPPSPKKSPPPKKTPPPPEVKKSPPPPPPRK----KPPPPP 108

[Close]

BLAST of MELO3C024094 vs. ExPASy TrEMBL
Match: A0A6J1F841 (extensin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443008 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-04
Identity = 50/109 (45.87%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 7   PPIMVSLVISVLVVALSLSYTTVQAYQDSYS-----------------------STLTFK 66
           P I+V LVI+V VVALSLS T+ + Y + YS                       S    K
Sbjct: 4   PSIIVHLVIAVFVVALSLSSTSAEGYDEYYSPPPPVYYSPCPPVKYSSPPPVKYSPPPPK 63

Query: 67  DHDKHKSPPPPSRKKSPP----PPPPSKRKSPPPPPPKRNEYLSPPPPP 89
             D++KSPPPPS KKSPP    PPPP  +KSPPPPPP++     PPPPP
Sbjct: 64  KDDEYKSPPPPSPKKSPPPKKTPPPPEVKKSPPPPPPRK----KPPPPP 108

The following BLAST results are available for this feature:

BLAST of MELO3C024094 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068050.1	2.1e-35	100.00	hypothetical protein E6C27_scaffold4741G00020 [Cucumis melo var. makuwa] >TYK315...	[more]
XP_011659754.2	4.9e-16	63.21	extensin-3-like [Cucumis sativus] >KAE8646189.1 hypothetical protein Csa_016540 ...	[more]
XP_022976650.1	1.9e-04	51.49	extensin-3-like [Cucurbita maxima]	[more]
KAG6592192.1	4.3e-04	45.95	hypothetical protein SDJN03_14538, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936365.1	9.6e-04	45.87	extensin-3-like isoform X1 [Cucurbita moschata] >XP_022936368.1 extensin-3-like ...	[more]

BLAST of MELO3C024094 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C024094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VLF0	1.0e-35	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1IK20	9.3e-05	51.49	extensin-3-like OS=Cucurbita maxima OX=3661 GN=LOC111476989 PE=4 SV=1	[more]
A0A6J1FDF6	4.6e-04	45.87	extensin-3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443007 PE=4 SV...	[more]
A0A6J1FDF9	4.6e-04	45.87	extensin-1-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111443008 PE=4 SV...	[more]
A0A6J1F841	4.6e-04	45.87	extensin-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443008 PE=4 SV=1	[more]

BLAST of MELO3C024094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024094.1	MELO3C024094.1	mRNA