MELO3C024073 (gene) Melon (DHL92) v4

Overview
NameMELO3C024073
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon gag protein
Locationchr01: 8247914 .. 8248129 (-)
RNA-Seq ExpressionMELO3C024073
SyntenyMELO3C024073
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATTTTTTGTAATTTTTTCAAGAGGCATGCCTTCCCCAACATCGTGGAGTGTTGCAGTATTTTTGATAGGAACATAATTGAAGCGGCAGCGGGTGGAGCCTTGGAGGATAAAACACCCACAGTGGCTCGAGACTTAATCTTCTTCATGGTTGAACACTCTAAAAGTTATGAGAGTAGACCCACCGAGCTTGACAATGAAACATCCAAAGAG

mRNA sequence

ATGGGCATTTTTTGTAATTTTTTCAAGAGGCATGCCTTCCCCAACATCGTGGAGTGTTGCAGTATTTTTGATAGGAACATAATTGAAGCGGCAGCGGGTGGAGCCTTGGAGGATAAAACACCCACAGTGGCTCGAGACTTAATCTTCTTCATGGTTGAACACTCTAAAAGTTATGAGAGTAGACCCACCGAGCTTGACAATGAAACATCCAAAGAG

Coding sequence (CDS)

ATGGGCATTTTTTGTAATTTTTTCAAGAGGCATGCCTTCCCCAACATCGTGGAGTGTTGCAGTATTTTTGATAGGAACATAATTGAAGCGGCAGCGGGTGGAGCCTTGGAGGATAAAACACCCACAGTGGCTCGAGACTTAATCTTCTTCATGGTTGAACACTCTAAAAGTTATGAGAGTAGACCCACCGAGCTTGACAATGAAACATCCAAAGAG

Protein sequence

MGIFCNFFKRHAFPNIVECCSIFDRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE
Homology
BLAST of MELO3C024073 vs. NCBI nr
Match: KAA0059539.1 (Retroviral aspartyl protease [Cucumis melo var. makuwa] >TYK14122.1 Retroviral aspartyl protease [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 0

Query: 26  NIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDN 68
           N IEAAAGGALEDKTPTVARDLIFFMVEH KS ESRPTELDN
Sbjct: 246 NTIEAAAGGALEDKTPTVARDLIFFMVEHFKSSESRPTELDN 287

BLAST of MELO3C024073 vs. NCBI nr
Match: KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 23  FDRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
           FDRN I+  AGGAL DKTPT AR+LI  MVE+S+S+ +R +ELDN  +KE
Sbjct: 109 FDRNTIDVVAGGALADKTPTEARELISRMVENSQSFGNRASELDNSLTKE 158

BLAST of MELO3C024073 vs. NCBI nr
Match: KAA0058150.1 (uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 23  FDRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
           FDRN ++AA GGAL DKTPT AR LI  M+E+S+S+ +R +ELDN  +KE
Sbjct: 176 FDRNTVDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKE 225

BLAST of MELO3C024073 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-06
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 24  DRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
           DRN ++A AGGAL DK PT AR+LI  M E+S+S+E+R +ELDN  +KE
Sbjct: 83  DRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKE 131

BLAST of MELO3C024073 vs. NCBI nr
Match: TYK09438.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0

Query: 25 RNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
          RN I+ AAGGAL DKTPT AR+LI  MVE+S+S+ +R +ELDN  +KE
Sbjct: 14 RNTIDVAAGGALVDKTPTEARELISRMVENSQSFGNRASELDNSLTKE 61

BLAST of MELO3C024073 vs. ExPASy TrEMBL
Match: A0A5A7V187 (Retroviral aspartyl protease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00430 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.3e-12
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 0

Query: 26  NIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDN 68
           N IEAAAGGALEDKTPTVARDLIFFMVEH KS ESRPTELDN
Sbjct: 246 NTIEAAAGGALEDKTPTVARDLIFFMVEHFKSSESRPTELDN 287

BLAST of MELO3C024073 vs. ExPASy TrEMBL
Match: A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.3e-07
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 23  FDRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
           FDRN I+  AGGAL DKTPT AR+LI  MVE+S+S+ +R +ELDN  +KE
Sbjct: 109 FDRNTIDVVAGGALADKTPTEARELISRMVENSQSFGNRASELDNSLTKE 158

BLAST of MELO3C024073 vs. ExPASy TrEMBL
Match: A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 23  FDRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
           FDRN ++AA GGAL DKTPT AR LI  M+E+S+S+ +R +ELDN  +KE
Sbjct: 176 FDRNTVDAATGGALADKTPTEARKLISRMMENSQSFGNRASELDNSLTKE 225

BLAST of MELO3C024073 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 0

Query: 24  DRNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
           DRN ++A AGGAL DK PT AR+LI  M E+S+S+E+R +ELDN  +KE
Sbjct: 83  DRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKE 131

BLAST of MELO3C024073 vs. ExPASy TrEMBL
Match: A0A5D3CDZ4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00240 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.8e-06
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 0

Query: 25 RNIIEAAAGGALEDKTPTVARDLIFFMVEHSKSYESRPTELDNETSKE 73
          RN I+ AAGGAL DKTPT AR+LI  MVE+S+S+ +R +ELDN  +KE
Sbjct: 14 RNTIDVAAGGALVDKTPTEARELISRMVENSQSFGNRASELDNSLTKE 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059539.11.9e-1192.86Retroviral aspartyl protease [Cucumis melo var. makuwa] >TYK14122.1 Retroviral a... [more]
KAA0061138.11.1e-0662.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0058150.12.4e-0660.00uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa][more]
KAA0047407.14.1e-0659.18retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... [more]
TYK09438.11.2e-0562.50retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V1879.3e-1292.86Retroviral aspartyl protease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7V0Q75.3e-0762.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7USL51.2e-0660.00Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CRR82.0e-0659.18Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5D3CDZ45.8e-0662.50Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024073.1MELO3C024073.1mRNA