MELO3C024033.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C024033.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2
Location	chr04: 23607927 .. 23619557 (-)
RNA-Seq Expression	MELO3C024033.jh1
Synteny	MELO3C024033.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGACAAAGAAATGGCGGAAGCTGGGCGCCTTGTGACAACAACAAGAAATATAAACTCCATTTCAAGTTCATTCAACAAACCTGCACCTAAATCTTTAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAATGACATCTCCTTGGTAAAACTTTCAAACTCTTCCTTGTCATCTTTTAGATTTCTGCAGACATTCCCTCTTCTATTCATACAATTCTCTTCCATCTCAAGATTTTCCTTTTTTTGTCCTATGAAGAGAAGAAGCAACAAAACAACAAGGCGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCGCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGGTAATTTCAATACTTTTCTCTCTCCAAAGCTCTATTTTATGTATAACATTAATGAACACAACAGCTTGAATCTAACTCCAACAACATCTAATGATGGATTCGATCCATCTCCAGTAGAATCTCATAGTGAACTATTGTTGGAGAGGCCGATACGGGTAAAGAATACTTTCCGAGAGAATGAGACTTCTTTCTTTTTCTTTTTCATTTTTTGTGAAGGAGCCTGCTGAAGAATCCATTTCTCAGCTCAAAGAGAATAGACATTGAACAATAACTTTTTAAGCAATTTAGAGAATTCAAACAGCATAAAATGAGAGCAATTCTACACAAAATGCTCTATCCGATAACTATACCACTAATAATTTCCCTATGTTTTTACCAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTACCTGTTCTTTGCCATACTGTAGAGAGGTAGCACTTTTTAAATAATCAAAAAACGATAAAATTAAATAGCTTGTTCCTAGTTATCTGTATCACATCTATCCATGAAGTTTCATTTGATATCATTCCAACCAATGTTCTAAACACTTACAATTATCTTAATCAAACAGATCAAAGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCACCTTCCAGATATTGGAGGCGATGATCCTTCGGTAAGTTTTTGCATTTCTTCACTTCAACCACTTAGAAGTTTGACAGCCATCTTAAACTTAACAGGTAATCTACGTTAAACCCGGGCTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGTGAGAAGTTGAATGCAAATAGAATTAGCCTACTTATCAATAACCATTAATCTAAAAATACTACCAAGGTTCAATTGGAAGAAGTTAACAAAAAAGACTACCTCTTCCAGGACACTTGCTCAGAGTCGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTCAAGCTTCCACTTGAAATTAACGTTGGGACTAATTGAGAAATGTTCATTGCAGATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTTCAGGCTTTTGGAGCTTAGAAAATCTAAAGCATAGATAACAAGCAATATGTATATATATTGATGGTTGCTCATATAGGCATTCGAAAACATGACTGGCCATTGGTAAAATTTAAATTGTTTATCAGTTTCTAAGTCAATATCAAAATGGAAAAGTGGTTTTCATCTGCAACTA

mRNA sequence

GAGACAAAGAAATGGCGGAAGCTGGGCGCCTTGTGACAACAACAAGAAATATAAACTCCATTTCAAGTTCATTCAACAAACCTGCACCTAAATCTTTAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAATGACATCTCCTTGAGAAGAAGCAACAAAACAACAAGGCGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCGCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTACCTGTTCTTTGCCATACTGTAGAGAGATCAAAGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCACCTTCCAGATATTGGAGGCGATGATCCTTCGGTAAGTTTTTGCATTTCTTCACTTCAACCACTTAGAAGTTTGACAGCCATCTTAAACTTAACAGGTAATCTACGTTAAACCCGGGCTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGTCGTGTGAGAAATCTCAACCCACAGTGCAATATATTGGGGCACAGAACGCTGCATCTATAGACAAGAGGTGGTTCAGGCTTTTGGAGCTTAGAAAATCTAAAGCATAGATAACAAGCAATATGTATATATATTGATGGTTGCTCATATAGGCATTCGAAAACATGACTGGCCATTGGTAAAATTTAAATTGTTTATCAGTTTCTAAGTCAATATCAAAATGGAAAAGTGGTTTTCATCTGCAACTA

Coding sequence (CDS)

ATGGCGGAAGCTGGGCGCCTTGTGACAACAACAAGAAATATAAACTCCATTTCAAGTTCATTCAACAAACCTGCACCTAAATCTTTAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAATGACATCTCCTTGAGAAGAAGCAACAAAACAACAAGGCGTCTAATCACAATATCAACATCAGGAAGCAGATGGCAAGGGAAATGGACCTGTGATTACCTGCTTTCGCTGCGAGACCTCAACTTAGAAGACTTGGTAGAAGATGAACACAAAAATGCACACGTCTTCATCAACCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACCGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTACCTGTTCTTTGCCATACTGTAGAGAGATCAAAGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAGATTCACCTTCCAGATATTGGAGGCGATGATCCTTCGGTAAGTTTTTGCATTTCTTCACTTCAACCACTTAGAAGTTTGACAGCCATCTTAAACTTAACAGGTAATCTACGTTAA

Protein sequence

MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVSFCISSLQPLRSLTAILNLTGNLR

Homology

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BLAST of MELO3C024033.jh1 vs. NCBI nr
Match: XP_008461873.1 (PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF177 domain-containing protein [Cucumis melo var. makuwa] >TYK04199.1 DUF177 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 454 bits (1168), Expect = 7.26e-157
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 305
           MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 306 TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 365
           TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 366 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 425
           TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 426 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 476
           RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA
Sbjct: 181 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 231

[Close]

BLAST of MELO3C024033.jh1 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus])

HSP 1 Score: 419 bits (1076), Expect = 6.48e-143
Identity = 216/229 (94.32%), Postives = 218/229 (95.20%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 305
           MAEAG LVTT RNINSISSSFNK APK  TQTFKIKASSKRNDISLR SNKTTRRLITIS
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLR-SNKTTRRLITIS 60

Query: 306 TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 365
           T+GSRWQGKWTCDYLLSLRDLNLEDLVEDE+KNAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TAGSRWQGKWTCDYLLSLRDLNLEDLVEDENKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 366 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 425
           TRKCC CS PYCREI ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 426 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKS 474
           RDTIRLTTSTKDTCSE CEKSQPTVQYIGAQNAASIDKRW RLLELRKS
Sbjct: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKS 228

[Close]

BLAST of MELO3C024033.jh1 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus])

HSP 1 Score: 417 bits (1073), Expect = 1.91e-142
Identity = 213/229 (93.01%), Postives = 218/229 (95.20%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 305
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 306 TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 365
           T+GSRWQGKWT DY+LSL+DLNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 366 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 425
           TRKCC CS PYCREI ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 426 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKS 474
           RDTIRLTTSTKDTCSE CEKSQPTVQYIGAQNAASIDKRW RLLELRKS
Sbjct: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQYIGAQNAASIDKRWSRLLELRKS 229

[Close]

BLAST of MELO3C024033.jh1 vs. NCBI nr
Match: XP_038906104.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 402 bits (1034), Expect = 1.58e-136
Identity = 211/232 (90.95%), Postives = 213/232 (91.81%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPA-PKSLTQTFKIKASSKRNDISLRRSNKTTRRLITI 305
           MAE G LVT  RNINSISSSFNK A PK  TQTFKI ASSKRNDISLRRSNKT+RRLITI
Sbjct: 1   MAETGHLVTA-RNINSISSSFNKAAAPKYATQTFKITASSKRNDISLRRSNKTSRRLITI 60

Query: 306 STSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTS 365
           STSGSRWQGKWT DYLLSLRDLNLEDLVEDEHKNA VFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STSGSRWQGKWTSDYLLSLRDLNLEDLVEDEHKNARVFINLCIEKHASFGFTVDGKINTS 120

Query: 366 FTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 425
           FTRKCCTCS PYCREI ANFNVLVLSSNR NREIHLPDIGGDDPSVIYVKPGLEADLDS 
Sbjct: 121 FTRKCCTCSSPYCREINANFNVLVLSSNRTNREIHLPDIGGDDPSVIYVKPGLEADLDSF 180

Query: 426 VRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 476
           VRDTIRLTTSTKDTCSE CEKSQPTVQYIGAQN ASIDKRW RLLELRKS A
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPTVQYIGAQNGASIDKRWSRLLELRKSNA 231

[Close]

BLAST of MELO3C024033.jh1 vs. NCBI nr
Match: XP_022983270.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 [Cucurbita maxima])

HSP 1 Score: 387 bits (995), Expect = 1.29e-130
Identity = 202/230 (87.83%), Postives = 210/230 (91.30%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPA-PKSLTQTFKIKASSKRNDISLRRSNKTTRRLITI 305
           MAEAG LV    N+NSISSSFNK A PK  TQTFKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVAA-GNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 306 STSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTS 365
           ST+GS WQGKW+CDYLLSL+D NLEDLVEDEHKNAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 366 FTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 425
           FTRKCCTCS PYCREI ANFNVLVLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSL 180

Query: 426 VRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKS 474
           VRDTIRLTTSTKDTCSE CEKSQP+VQYIGAQNAASIDKRW RLLELRKS
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKS 229

[Close]

BLAST of MELO3C024033.jh1 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.1e-57
Identity = 108/180 (60.00%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 294 SNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASF 353
           S+KT +RLIT+S S  +W G W   Y +SLRDL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 354 GFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 413
           G +VDGRI TS  RKC  CS  Y R I  +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 414 KPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRK 473
           +PG EA+LDSLV+DTIRLTT  KD CS+SCEKS+PT+ Y+G  N AS+DKRW RLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of MELO3C024033.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1)

HSP 1 Score: 454 bits (1168), Expect = 3.51e-157
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 305
           MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 306 TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 365
           TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 366 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 425
           TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 426 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 476
           RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA
Sbjct: 181 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 231

[Close]

BLAST of MELO3C024033.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1)

HSP 1 Score: 454 bits (1168), Expect = 3.51e-157
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 305
           MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 306 TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 365
           TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 366 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 425
           TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 426 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 476
           RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA
Sbjct: 181 RDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKSKA 231

[Close]

BLAST of MELO3C024033.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1)

HSP 1 Score: 398 bits (1022), Expect = 1.95e-134
Identity = 213/267 (79.78%), Postives = 216/267 (80.90%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSN---------- 305
           MAEAG LVTT RNINSISSSFNK APK  TQTFKIKASSKRNDISL + N          
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLVKHNLLLVIFQISA 60

Query: 306 ----------------------------KTTRRLITISTSGSRWQGKWTCDYLLSLRDLN 365
                                       KTTRRLITIST+GSRWQGKWTCDYLLSLRDLN
Sbjct: 61  DIPSSIHTFLFHLMIFSFSSLNEAQIRNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLN 120

Query: 366 LEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCTCSLPYCREIKANFNVL 425
           LEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSFTRKCC CS PYCREI ANFNVL
Sbjct: 121 LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVL 180

Query: 426 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQ 474
           VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSE CEKSQ
Sbjct: 181 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQ 240

[Close]

BLAST of MELO3C024033.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 387 bits (995), Expect = 6.24e-131
Identity = 202/230 (87.83%), Postives = 210/230 (91.30%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPA-PKSLTQTFKIKASSKRNDISLRRSNKTTRRLITI 305
           MAEAG LV    N+NSISSSFNK A PK  TQTFKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVAA-GNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 306 STSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTS 365
           ST+GS WQGKW+CDYLLSL+D NLEDLVEDEHKNAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 366 FTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 425
           FTRKCCTCS PYCREI ANFNVLVLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSL 180

Query: 426 VRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKS 474
           VRDTIRLTTSTKDTCSE CEKSQP+VQYIGAQNAASIDKRW RLLELRKS
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKS 229

[Close]

BLAST of MELO3C024033.jh1 vs. ExPASy TrEMBL
Match: A0A6J1F8T8 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1)

HSP 1 Score: 381 bits (978), Expect = 2.35e-128
Identity = 199/230 (86.52%), Postives = 207/230 (90.00%), Query Frame = 0


Query: 246 MAEAGRLVTTTRNINSISSSFNKPAP-KSLTQTFKIKASSKRNDISLRRSNKTTRRLITI 305
           MAEAG LV    N+NSISSSFNK A  K  TQ FKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVAAA-NVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 306 STSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTS 365
           ST+GS WQG+W+CDYLLSL+D NLEDLVEDEHKNAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 366 FTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 425
           F RKCCTCS PYCREI ANFNVLVLSSNRA RE  LPDIGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FIRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSL 180

Query: 426 VRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRKS 474
           VRDTIRLTTSTKDTCSE CEKSQP+VQYIGAQNAASIDKRW RLLELRKS
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKS 229

[Close]

BLAST of MELO3C024033.jh1 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 223.0 bits (567), Expect = 5.1e-58
Identity = 108/180 (60.00%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 294 SNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASF 353
           S+KT +RLIT+S S  +W G W   Y +SLRDL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 354 GFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 413
           G +VDGRI TS  RKC  CS  Y R I  +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 414 KPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRK 473
           +PG EA+LDSLV+DTIRLTT  KD CS+SCEKS+PT+ Y+G  N AS+DKRW RLLEL+K
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of MELO3C024033.jh1 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) )

HSP 1 Score: 223.0 bits (567), Expect = 5.1e-58
Identity = 108/180 (60.00%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 294 SNKTTRRLITISTSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASF 353
           S+KT +RLIT+S S  +W G W   Y +SLRDL L+DLVED   N+ V ++L +++HAS 
Sbjct: 46  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 105

Query: 354 GFTVDGRINTSFTRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 413
           G +VDGRI TS  RKC  CS  Y R I  +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 106 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 165

Query: 414 KPGLEADLDSLVRDTIRLTTSTKDTCSESCEKSQPTVQYIGAQNAASIDKRWFRLLELRK 473
           +PG EA+LDSLV+DTIRLTT  KD CS+SCEKS+PT+ Y+G  N AS+DKRW RLLEL+K
Sbjct: 166 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 225

The following BLAST results are available for this feature:

BLAST of MELO3C024033.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461873.1	7.26e-157	100.00	PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF...	[more]
XP_031738565.1	6.48e-143	94.32	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_011651803.2	1.91e-142	93.01	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_038906104.1	1.58e-136	90.95	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_022983270.1	1.29e-130	87.83	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of MELO3C024033.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5M1	7.1e-57	60.00	Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic O...	[more]

BLAST of MELO3C024033.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1F8	3.51e-157	100.00	DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFK7	3.51e-157	100.00	uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=...	[more]
A0A0A0L9P4	1.95e-134	79.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1	[more]
A0A6J1J5E3	6.24e-131	87.83	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1F8T8	2.35e-128	86.52	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of MELO3C024033.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19800.1	5.1e-58	60.00	Protein of unknown function (DUF177)	[more]
AT3G19800.2	5.1e-58	60.00	Protein of unknown function (DUF177)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044985	Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic	PANTHER	PTHR37734	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 2, CHLOROPLASTIC	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024033.jh1.t2	MELO3C024033.jh1.t2	mRNA
MELO3C024033.jh1.t1	MELO3C024033.jh1.t1	mRNA