MELO3C023963.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C023963.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr04: 24360383 .. 24360742 (+)
RNA-Seq ExpressionMELO3C023963.jh1
SyntenyMELO3C023963.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGCGGCTCACGGCTCAAGCAGAAGGGTCGCAGCTCACGGCTCAAGCGGAAGGGCGCGGCTTACGGCTTGGCGGAAAGGCGGCTGGGTAGAAGGGGGCACGACTCACGGCTCAAGCGGGAGAGGAAGCGGCTTAAGTTATGGCGCGGCTCACGGGTCGGTGGAATGGCGATCGGGTCACAGCTCGGCATGAAGGATGCGGCTCGGAGATGGAAGGAGATCGGGTCACGGCTCGCGGACGCCATGGCTTTGACGGAGAGCGCAGCTTGTGAGAGGAGACGGCTACTGGCGCAGACGAGGAGGAAAAGCTTCGCGCAGCGGCTGGGCTTCCTCGGACGATCTGCTGGGCGCGGCTGA

mRNA sequence

ATGGGTCGCGGCTCACGGCTCAAGCAGAAGGGTCGCAGCTCACGGCTCAAGCGGAAGGGCGCGGCTTACGGCTTGGCGGAAAGGCGGCTGGGTAGAAGGGGGCACGACTCACGGCTCAAGCGGGAGAGGAAGCGGCTTAAGTTATGGCGCGGCTCACGGGTCGGTGGAATGGCGATCGGGTCACAGCTCGGCATGAAGGATGCGGCTCGGAGATGGAAGGAGATCGGGTCACGGCTCGCGGACGCCATGGCTTTGACGGAGAGCGCAGCTTGTGAGAGGAGACGGCTACTGGCGCAGACGAGGAGGAAAAGCTTCGCGCAGCGGCTGGGCTTCCTCGGACGATCTGCTGGGCGCGGCTGA

Coding sequence (CDS)

ATGGGTCGCGGCTCACGGCTCAAGCAGAAGGGTCGCAGCTCACGGCTCAAGCGGAAGGGCGCGGCTTACGGCTTGGCGGAAAGGCGGCTGGGTAGAAGGGGGCACGACTCACGGCTCAAGCGGGAGAGGAAGCGGCTTAAGTTATGGCGCGGCTCACGGGTCGGTGGAATGGCGATCGGGTCACAGCTCGGCATGAAGGATGCGGCTCGGAGATGGAAGGAGATCGGGTCACGGCTCGCGGACGCCATGGCTTTGACGGAGAGCGCAGCTTGTGAGAGGAGACGGCTACTGGCGCAGACGAGGAGGAAAAGCTTCGCGCAGCGGCTGGGCTTCCTCGGACGATCTGCTGGGCGCGGCTGA

Protein sequence

MGRGSRLKQKGRSSRLKRKGAAYGLAERRLGRRGHDSRLKRERKRLKLWRGSRVGGMAIGSQLGMKDAARRWKEIGSRLADAMALTESAACERRRLLAQTRRKSFAQRLGFLGRSAGRG
Homology
BLAST of MELO3C023963.jh1 vs. NCBI nr
Match: KAA0037699.1 (hypothetical protein E6C27_scaffold1593G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 1.63e-25
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 2   GRGSRLKQKGRSSRLKRKGAAYGLAERRLGRRGHDSRLKRERKRLKLWRGSRVGGMAIGS 61
           GRGSRLKQKGRSSRL RKGAAYG AE RLGRRGHDSRLKRERKRLKLW  SR+ GMAIGS
Sbjct: 129 GRGSRLKQKGRSSRLTRKGAAYGSAEGRLGRRGHDSRLKRERKRLKLWGDSRLCGMAIGS 188

Query: 62  QLGMKDAA 69
           QLG+K AA
Sbjct: 189 QLGIKRAA 196

BLAST of MELO3C023963.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T8S4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1593G00230 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 7.89e-26
Identity = 59/68 (86.76%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 2   GRGSRLKQKGRSSRLKRKGAAYGLAERRLGRRGHDSRLKRERKRLKLWRGSRVGGMAIGS 61
           GRGSRLKQKGRSSRL RKGAAYG AE RLGRRGHDSRLKRERKRLKLW  SR+ GMAIGS
Sbjct: 129 GRGSRLKQKGRSSRLTRKGAAYGSAEGRLGRRGHDSRLKRERKRLKLWGDSRLCGMAIGS 188

Query: 62  QLGMKDAA 69
           QLG+K AA
Sbjct: 189 QLGIKRAA 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0037699.11.63e-2586.76hypothetical protein E6C27_scaffold1593G00230 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T8S47.89e-2686.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023963.jh1.t1MELO3C023963.jh1.t1mRNA