MELO3C023871.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C023871.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptioncyclin-dependent protein kinase inhibitor SMR2
Locationchr10: 6616144 .. 6616712 (+)
RNA-Seq ExpressionMELO3C023871.jh1
SyntenyMELO3C023871.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTAACTTTCTCCGATAAAAATTGCAATTCATGGCGGAGGAGACAGTGGAACTTTGCCGGACGCCGCGACGGAGGAGTTGCAGGATTCCGGTGGCGGTGGCGTGTCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGAGGGGTATTTTCGACCGCCGGATTTGGAGGTTTTGTTTGGTCTTGTTGCTCCAAGAGAAGAGGCTTGTACTTAATATATATATATATATTTTGCATGTATATAGAATAGAGATTTAATTTTCTGTTTTGTTTTTCTTTTTTAATGCATTTGAGAGGTTAGTGATTTCATGTAAAGAATGGATTTGTAAAAGTAGTTTTTGGAGGAGAAAGCTGTAGTGAGAAGTGGAAATAATTTGTTTTTAATTTTTTGAGGTTTTTAATTTTTATTTATTTATTATTCTTTTACTTGGTTGAATAATTTTCGTAGATGTTTATTTATCGTATAAAAGAATGATCTGTTTTTTGTGTTTAGGTTTAGCATAGCTCAACCTCGTACTTCATTAATACAATATCTTTGAAAAAAGAAA

mRNA sequence

AATTTAACTTTCTCCGATAAAAATTGCAATTCATGGCGGAGGAGACAGTGGAACTTTGCCGGACGCCGCGACGGAGGAGTTGCAGGATTCCGGTGGCGGTGGCGTGTCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGAGGGGTATTTTCGACCGCCGGATTTGGAGGTTTTGTTTGGTCTTGTTGCTCCAAGAGAAGAGGCTTGTACTTAATATATATATATATATTTTGCATGTATATAGAATAGAGATTTAATTTTCTGTTTTGTTTTTCTTTTTTAATGCATTTGAGAGGTTAGTGATTTCATGTAAAGAATGGATTTGTAAAAGTAGTTTTTGGAGGAGAAAGCTGTAGTGAGAAGTGGAAATAATTTGTTTTTAATTTTTTGAGGTTTTTAATTTTTATTTATTTATTATTCTTTTACTTGGTTGAATAATTTTCGTAGATGTTTATTTATCGTATAAAAGAATGATCTGTTTTTTGTGTTTAGGTTTAGCATAGCTCAACCTCGTACTTCATTAATACAATATCTTTGAAAAAAGAAA

Coding sequence (CDS)

ATGGCGGAGGAGACAGTGGAACTTTGCCGGACGCCGCGACGGAGGAGTTGCAGGATTCCGGTGGCGGTGGCGTGTCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGAGGGGTATTTTCGACCGCCGGATTTGGAGGTTTTGTTTGGTCTTGTTGCTCCAAGAGAAGAGGCTTGTACTTAA

Protein sequence

MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEACT
Homology
BLAST of MELO3C023871.jh1 vs. NCBI nr
Match: KAE8647993.1 (hypothetical protein Csa_021483 [Cucumis sativus])

HSP 1 Score: 128 bits (322), Expect = 3.39e-37
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0

Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEETVELCRTPRRRSCRIPVA+ACPSAPRKKPVCLKRKAPPKEGYFR PDLEVLFG V 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 PREEAC 66
          PREEAC
Sbjct: 61 PREEAC 66

BLAST of MELO3C023871.jh1 vs. NCBI nr
Match: KAG6600042.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030712.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106 bits (265), Expect = 1.84e-28
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEE  ++CRTPRR+SCRIPVAV CP+APRKK V LKRKAPPK+GYFRPPDLEVLFG VA
Sbjct: 1  MAEEKKDICRTPRRKSCRIPVAVLCPAAPRKKAVSLKRKAPPKDGYFRPPDLEVLFGFVA 60

Query: 61 PR 62
          PR
Sbjct: 61 PR 62

BLAST of MELO3C023871.jh1 vs. NCBI nr
Match: XP_021655298.1 (cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis])

HSP 1 Score: 87.8 bits (216), Expect = 4.69e-21
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 7  ELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEAC 66
          E+C TPRRR  RIP A+ACP APRKKPV  K+++PPK+GYF+PPDLE LF ++APR EAC
Sbjct: 6  EVCNTPRRRESRIPAALACPPAPRKKPVFSKKRSPPKDGYFQPPDLEALF-MIAPRREAC 64

BLAST of MELO3C023871.jh1 vs. NCBI nr
Match: EEF30808.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 79.0 bits (193), Expect = 1.59e-17
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 7  ELCRTPRRRSCRIPVA-VACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEA 65
          E CRTP RR CRIP A VACP APRKKPV +K++ PPK+GYF+PPDLE  F L+ PR EA
Sbjct: 6  EGCRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFF-LITPRREA 64

BLAST of MELO3C023871.jh1 vs. NCBI nr
Match: KAE7996760.1 (hypothetical protein FH972_001453 [Carpinus fangiana])

HSP 1 Score: 77.4 bits (189), Expect = 7.96e-17
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 7  ELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEAC 66
          E C TPR   CR+P A ACP AP+KKPV  K++APPK GYF+PPDLE LF +V+     C
Sbjct: 12 ESCGTPRHSGCRLPAAFACPPAPKKKPVYFKQQAPPKNGYFQPPDLEALFAMVSDEGSLC 71

BLAST of MELO3C023871.jh1 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-11
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEE    C TPR    RIPVA  CP  PRKK + ++++ PP+ GYF+PPDLE LF    
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 PREEAC 67
          PR EAC
Sbjct: 70 PRREAC 71

BLAST of MELO3C023871.jh1 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 9  CRTPRRRSCRIPVAVACPSAPRKKPVCL---KRKAPPKEGYFRPPDLEVLFGLVAPREEA 66
          C TP R  CRIP    CP   R+K   L   K++ PPK+GYF+PPDL++ F +VA  + A
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVAASQAA 81

BLAST of MELO3C023871.jh1 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-04
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 0

Query: 4   ETVELC-RTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLF 57
           E  +LC  TP   S RIP  + CP AP+K+ + LK    P+E +F PPDLE +F
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVF 101

BLAST of MELO3C023871.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KS84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1)

HSP 1 Score: 130 bits (327), Expect = 2.75e-38
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0

Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEETVELCRTPRRRSCRIPVA+ACPSAPRKKPVCLKRKAPPKEGYFR PDLEVLFG V 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 PREEACT 67
          PREEACT
Sbjct: 61 PREEACT 67

BLAST of MELO3C023871.jh1 vs. ExPASy TrEMBL
Match: B9T003 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.69e-18
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 7  ELCRTPRRRSCRIPVA-VACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEA 65
          E CRTP RR CRIP A VACP APRKKPV +K++ PPK+GYF+PPDLE  F L+ PR EA
Sbjct: 6  EGCRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFF-LITPRREA 64

BLAST of MELO3C023871.jh1 vs. ExPASy TrEMBL
Match: A0A5N6QF01 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.85e-17
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 7  ELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEAC 66
          E C TPR   CR+P A ACP AP+KKPV  K++APPK GYF+PPDLE LF +V+     C
Sbjct: 12 ESCGTPRHSGCRLPAAFACPPAPKKKPVYFKQQAPPKNGYFQPPDLEALFAMVSDEGSLC 71

BLAST of MELO3C023871.jh1 vs. ExPASy TrEMBL
Match: A0A1U8A7K0 (cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LOC104601057 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 9.52e-17
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 3  EETVEL-CRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAP 62
          EE +E  C TP+ R CRIP+A  CP  PRKKP+  K++ PP  GYF+PPDLE+LF  +AP
Sbjct: 32 EEMIEEGCETPKHRDCRIPMASVCPPPPRKKPIYGKKRDPPTNGYFQPPDLELLFA-IAP 91

Query: 63 REEAC 66
          R EAC
Sbjct: 92 RREAC 95

BLAST of MELO3C023871.jh1 vs. ExPASy TrEMBL
Match: A0A7I8K045 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001718 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.22e-15
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 0

Query: 11 TPRRRSCRIPVAVACPSAPRKKPVCL-KRKAPPKEGYFRPPDLEVLFGLVAPREEAC 66
          TP+R  CRIPV  ACP  PRKKPV   KR+ PPK GYF+PPDLE LF LV  RE +C
Sbjct: 15 TPKRVECRIPVVFACPPPPRKKPVVFTKRREPPKNGYFQPPDLEALFKLVPRREASC 71

BLAST of MELO3C023871.jh1 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-12
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEE    C TPR    RIPVA  CP  PRKK + ++++ PP+ GYF+PPDLE LF    
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 PREEAC 67
          PR EAC
Sbjct: 70 PRREAC 71

BLAST of MELO3C023871.jh1 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 2.7e-05
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 0

Query: 4   ETVELC-RTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLF 57
           E  +LC  TP   S RIP  + CP AP+K+ + LK    P+E +F PPDLE +F
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVF 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647993.13.39e-3793.94hypothetical protein Csa_021483 [Cucumis sativus][more]
KAG6600042.11.84e-2882.26Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ... [more]
XP_021655298.14.69e-2168.33cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis][more]
EEF30808.11.59e-1768.33conserved hypothetical protein [Ricinus communis][more]
KAE7996760.17.96e-1758.33hypothetical protein FH972_001453 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Q1JPP84.1e-1154.55Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G... [more]
Q9LNX41.2e-0746.67Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G... [more]
Q1G3Y43.7e-0446.30Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ... [more]
Match NameE-valueIdentityDescription
A0A0A0KS842.75e-3894.03Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1[more]
B9T0037.69e-1868.33Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1[more]
A0A5N6QF013.85e-1758.33Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1[more]
A0A1U8A7K09.52e-1758.46cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LO... [more]
A0A7I8K0451.22e-1564.91Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI8410_01001718 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT5G02220.12.9e-1254.55unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
AT1G60783.12.7e-0546.30unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33142:SF56CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR5coord: 5..64
IPR040389Cyclin-dependent protein kinase inhibitor SMRPANTHERPTHR33142CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13coord: 5..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023871.jh1.t1MELO3C023871.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032875 regulation of DNA endoreduplication