MELO3C023871 (gene) Melon (DHL92) v4

Overview


Name	MELO3C023871
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	cyclin-dependent protein kinase inhibitor SMR2
Location	chr10: 6451918 .. 6452121 (+)
RNA-Seq Expression	MELO3C023871
Synteny	MELO3C023871

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGGAGACAGTGGAACTTTGCCGGACGCCGCGACGGAGGAGTTGCAGGATTCCGGTGGCGGTGGCGTGTCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGAGGGGTATTTTCGACCGCCGGATTTGGAGGTTTTGTTTGGTCTTGTTGCTCCAAGAGAAGAGGCTTGTACTTAA

mRNA sequence

ATGGCGGAGGAGACAGTGGAACTTTGCCGGACGCCGCGACGGAGGAGTTGCAGGATTCCGGTGGCGGTGGCGTGTCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGAGGGGTATTTTCGACCGCCGGATTTGGAGGTTTTGTTTGGTCTTGTTGCTCCAAGAGAAGAGGCTTGTACTTAA

Coding sequence (CDS)

ATGGCGGAGGAGACAGTGGAACTTTGCCGGACGCCGCGACGGAGGAGTTGCAGGATTCCGGTGGCGGTGGCGTGTCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGAGGGGTATTTTCGACCGCCGGATTTGGAGGTTTTGTTTGGTCTTGTTGCTCCAAGAGAAGAGGCTTGTACTTAA

Protein sequence

MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEACT

Homology

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BLAST of MELO3C023871 vs. NCBI nr
Match: KAE8647993.1 (hypothetical protein Csa_021483 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEETVELCRTPRRRSCRIPVA+ACPSAPRKKPVCLKRKAPPKEGYFR PDLEVLFG V 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 PREEAC 67
          PREEAC
Sbjct: 61 PREEAC 66

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BLAST of MELO3C023871 vs. NCBI nr
Match: KAG6600042.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030712.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 1.6e-20
Identity = 51/62 (82.26%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEE  ++CRTPRR+SCRIPVAV CP+APRKK V LKRKAPPK+GYFRPPDLEVLFG VA
Sbjct: 1  MAEEKKDICRTPRRKSCRIPVAVLCPAAPRKKAVSLKRKAPPKDGYFRPPDLEVLFGFVA 60

Query: 61 PR 63
          PR
Sbjct: 61 PR 62

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BLAST of MELO3C023871 vs. NCBI nr
Match: XP_021655298.1 (cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis])

HSP 1 Score: 90.5 bits (223), Expect = 5.9e-15
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEAC 66
          E+C TPRRR  RIP A+ACP APRKKPV  K+++PPK+GYF+PPDLE LF ++APR EAC
Sbjct: 6  EVCNTPRRRESRIPAALACPPAPRKKPVFSKKRSPPKDGYFQPPDLEALF-MIAPRREAC 64

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BLAST of MELO3C023871 vs. NCBI nr
Match: EEF30808.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVA-VACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEA 66
          E CRTP RR CRIP A VACP APRKKPV +K++ PPK+GYF+PPDLE  F L+ PR EA
Sbjct: 6  EGCRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFF-LITPRREA 64

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BLAST of MELO3C023871 vs. NCBI nr
Match: KAE7996760.1 (hypothetical protein FH972_001453 [Carpinus fangiana])

HSP 1 Score: 80.1 bits (196), Expect = 8.0e-12
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEAC 66
          E C TPR   CR+P A ACP AP+KKPV  K++APPK GYF+PPDLE LF +V+     C
Sbjct: 12 ESCGTPRHSGCRLPAAFACPPAPKKKPVYFKQQAPPKNGYFQPPDLEALFAMVSDEGSLC 71

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BLAST of MELO3C023871 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.1e-11
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEE    C TPR    RIPVA  CP  PRKK + ++++ PP+ GYF+PPDLE LF    
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 PREEAC 67
          PR EAC
Sbjct: 70 PRREAC 71

[Close]

BLAST of MELO3C023871 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 9  CRTPRRRSCRIPVAVACPSAPRKKPVCL---KRKAPPKEGYFRPPDLEVLFGLVAPREEA 66
          C TP R  CRIP    CP   R+K   L   K++ PPK+GYF+PPDL++ F +VA  + A
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVAASQAA 81

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BLAST of MELO3C023871 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 3.7e-04
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 4   ETVELC-RTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLF 57
           E  +LC  TP   S RIP  + CP AP+K+ + LK    P+E +F PPDLE +F
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVF 101

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BLAST of MELO3C023871 vs. ExPASy TrEMBL
Match: A0A0A0KS84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.0e-28
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEETVELCRTPRRRSCRIPVA+ACPSAPRKKPVCLKRKAPPKEGYFR PDLEVLFG V 
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 PREEACT 68
          PREEACT
Sbjct: 61 PREEACT 67

[Close]

BLAST of MELO3C023871 vs. ExPASy TrEMBL
Match: B9T003 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVA-VACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEA 66
          E CRTP RR CRIP A VACP APRKKPV +K++ PPK+GYF+PPDLE  F L+ PR EA
Sbjct: 6  EGCRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFF-LITPRREA 64

[Close]

BLAST of MELO3C023871 vs. ExPASy TrEMBL
Match: A0A5N6QF01 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.9e-12
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAPREEAC 66
          E C TPR   CR+P A ACP AP+KKPV  K++APPK GYF+PPDLE LF +V+     C
Sbjct: 12 ESCGTPRHSGCRLPAAFACPPAPKKKPVYFKQQAPPKNGYFQPPDLEALFAMVSDEGSLC 71

[Close]

BLAST of MELO3C023871 vs. ExPASy TrEMBL
Match: A0A1U8A7K0 (cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LOC104601057 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.1e-12
Identity = 37/66 (56.06%), Postives = 46/66 (69.70%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          + E   E C TP+ R CRIP+A  CP  PRKKP+  K++ PP  GYF+PPDLE+LF  +A
Sbjct: 31 LEEMIEEGCETPKHRDCRIPMASVCPPPPRKKPIYGKKRDPPTNGYFQPPDLELLFA-IA 90

Query: 61 PREEAC 67
          PR EAC
Sbjct: 91 PRREAC 95

[Close]

BLAST of MELO3C023871 vs. ExPASy TrEMBL
Match: A0A2C9VM76 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G117700 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.3e-11
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 7   ELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVAP--REE 66
           E C+TPRR   RIP A+ACP AP+KK V LK++ PPKEGYF PPDLE  F ++AP  R+E
Sbjct: 52  EGCKTPRRWESRIPTALACPPAPKKKLVYLKKRMPPKEGYFEPPDLEAFF-VIAPKARKE 111

[Close]

BLAST of MELO3C023871 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.2 bits (165), Expect = 2.9e-12
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGLVA 60
          MAEE    C TPR    RIPVA  CP  PRKK + ++++ PP+ GYF+PPDLE LF    
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 PREEAC 67
          PR EAC
Sbjct: 70 PRREAC 71

[Close]

BLAST of MELO3C023871 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 2.7e-05
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 0


Query: 4   ETVELC-RTPRRRSCRIPVAVACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLF 57
           E  +LC  TP   S RIP  + CP AP+K+ + LK    P+E +F PPDLE +F
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVF 101

The following BLAST results are available for this feature:

BLAST of MELO3C023871 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647993.1	3.0e-27	93.94	hypothetical protein Csa_021483 [Cucumis sativus]	[more]
KAG6600042.1	1.6e-20	82.26	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
XP_021655298.1	5.9e-15	68.33	cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis]	[more]
EEF30808.1	3.6e-12	68.33	conserved hypothetical protein [Ricinus communis]	[more]
KAE7996760.1	8.0e-12	58.33	hypothetical protein FH972_001453 [Carpinus fangiana]	[more]

BLAST of MELO3C023871 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	4.1e-11	54.55	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	1.2e-07	46.67	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	3.7e-04	46.30	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MELO3C023871 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS84	3.0e-28	94.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1	[more]
B9T003	1.7e-12	68.33	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1	[more]
A0A5N6QF01	3.9e-12	58.33	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1	[more]
A0A1U8A7K0	5.1e-12	56.06	cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LO...	[more]
A0A2C9VM76	3.3e-11	62.90	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G117700 PE=4 SV=...	[more]

BLAST of MELO3C023871 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	2.9e-12	54.55	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G60783.1	2.7e-05	46.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142:SF56	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR5	coord: 5..64
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 5..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023871.1	MELO3C023871.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication