MELO3C023857 (gene) Melon (DHL92) v4

Overview
NameMELO3C023857
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionmediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr03: 18404323 .. 18405032 (-)
RNA-Seq ExpressionMELO3C023857
SyntenyMELO3C023857
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACGAGTAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCCATGACACAGACACAGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTATTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAACAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAATAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAAACATTTTGATTCATATTTAATTATTTTACAATCAAAAGCACTTA

mRNA sequence

TAACGAGTAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCCATGACACAGACACAGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTATTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAATAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAAACATTTTGATTCATATTTAATTATTTTACAATCAAAAGCACTTA

Coding sequence (CDS)

ATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCCATGACACAGACACAGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTATTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAATAA

Protein sequence

MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGEHNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Homology
BLAST of MELO3C023857 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 57  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 116

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 117 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 176

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 177 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 221

BLAST of MELO3C023857 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 241

BLAST of MELO3C023857 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 820 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 879

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 880 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 939

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 940 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 984

BLAST of MELO3C023857 vs. NCBI nr
Match: KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 5.8e-80
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMH HGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYYEVPAAVP+QSDEQQQQENA VPEQSDEQQQQEN EEIQ
Sbjct: 261 HNEYLYYEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQ 305

BLAST of MELO3C023857 vs. NCBI nr
Match: TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 1.7e-79
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYYEVPAAVPEQS+E QQQENAAVP QSDEQQQQEN EEIQ
Sbjct: 261 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQ 305

BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.4e-81
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 820 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 879

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 880 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 939

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 940 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 984

BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match: A0A1S3BLK4 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.4e-81
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 77  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 241

BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match: A0A1S4DWZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.4e-81
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 57  MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 116

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 117 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 176

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 177 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 221

BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match: A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 2.8e-80
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMH HGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYYEVPAAVP+QSDEQQQQENA VPEQSDEQQQQEN EEIQ
Sbjct: 261 HNEYLYYEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQ 305

BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match: A0A5D3D5R5 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001010 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 8.2e-80
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0

Query: 1   MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
           MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200

Query: 61  MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
           MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260

Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
           HNEYLYYEVPAAVPEQS+E QQQENAAVP QSDEQQQQEN EEIQ
Sbjct: 261 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQ 305

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016900498.11.5e-8097.58PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
XP_008449513.11.5e-8097.58PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
TYK27427.11.5e-8097.58mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0051233.15.8e-8096.97mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK18891.11.7e-7996.97mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DUI17.4e-8197.58Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A1S3BLK47.4e-8197.58mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A1S4DWZ97.4e-8197.58GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
A0A5A7U5S82.8e-8096.97Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3D5R58.2e-8096.97Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023857.1MELO3C023857.1mRNA