Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACGAGTAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCCATGACACAGACACAGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTATTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAACAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAATAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAAACATTTTGATTCATATTTAATTATTTTACAATCAAAAGCACTTA
mRNA sequence
TAACGAGTAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCCATGACACAGACACAGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTATTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAATAACAAAGAGTTCAAAGTCGACGACGACAACCAGCTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAAACATTTTGATTCATATTTAATTATTTTACAATCAAAAGCACTTA
Coding sequence (CDS)
ATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGCCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCCATGACACAGACACAGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAACGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAATTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTATTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCAGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAATAA
Protein sequence
MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGEHNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Homology
BLAST of MELO3C023857 vs. NCBI nr
Match:
XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])
HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 57 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 116
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 117 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 176
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 177 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 221
BLAST of MELO3C023857 vs. NCBI nr
Match:
XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])
HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 77 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 241
BLAST of MELO3C023857 vs. NCBI nr
Match:
TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 820 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 879
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 880 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 939
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 940 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 984
BLAST of MELO3C023857 vs. NCBI nr
Match:
KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 307.8 bits (787), Expect = 5.8e-80
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMH HGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYYEVPAAVP+QSDEQQQQENA VPEQSDEQQQQEN EEIQ
Sbjct: 261 HNEYLYYEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQ 305
BLAST of MELO3C023857 vs. NCBI nr
Match:
TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 306.2 bits (783), Expect = 1.7e-79
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYYEVPAAVPEQS+E QQQENAAVP QSDEQQQQEN EEIQ
Sbjct: 261 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQ 305
BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match:
A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)
HSP 1 Score: 309.7 bits (792), Expect = 7.4e-81
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 820 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 879
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 880 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 939
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 940 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 984
BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match:
A0A1S3BLK4 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)
HSP 1 Score: 309.7 bits (792), Expect = 7.4e-81
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 77 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 136
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 137 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 196
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 197 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 241
BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match:
A0A1S4DWZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)
HSP 1 Score: 309.7 bits (792), Expect = 7.4e-81
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQE DQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 57 MENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 116
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFG TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 117 MPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 176
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYY+VPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ
Sbjct: 177 HNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 221
BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match:
A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)
HSP 1 Score: 307.8 bits (787), Expect = 2.8e-80
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMH HGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGE 260
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYYEVPAAVP+QSDEQQQQENA VPEQSDEQQQQEN EEIQ
Sbjct: 261 HNEYLYYEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQ 305
BLAST of MELO3C023857 vs. ExPASy TrEMBL
Match:
A0A5D3D5R5 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001010 PE=4 SV=1)
HSP 1 Score: 306.2 bits (783), Expect = 8.2e-80
Identity = 160/165 (96.97%), Postives = 161/165 (97.58%), Query Frame = 0
Query: 1 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 60
MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM
Sbjct: 141 MENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMM 200
Query: 61 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSYSYMHGHGRGRGE 120
MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPS SYMHGHGRGRGE
Sbjct: 201 MPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGE 260
Query: 121 HNEYLYYEVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 166
HNEYLYYEVPAAVPEQS+E QQQENAAVP QSDEQQQQEN EEIQ
Sbjct: 261 HNEYLYYEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQ 305
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_016900498.1 | 1.5e-80 | 97.58 | PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... | [more] |
XP_008449513.1 | 1.5e-80 | 97.58 | PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... | [more] |
TYK27427.1 | 1.5e-80 | 97.58 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
KAA0051233.1 | 5.8e-80 | 96.97 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
TYK18891.1 | 1.7e-79 | 96.97 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DUI1 | 7.4e-81 | 97.58 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A1S3BLK4 | 7.4e-81 | 97.58 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A1S4DWZ9 | 7.4e-81 | 97.58 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... | [more] |
A0A5A7U5S8 | 2.8e-80 | 96.97 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
A0A5D3D5R5 | 8.2e-80 | 96.97 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
Match Name | E-value | Identity | Description | |