MELO3C023835 (gene) Melon (DHL92) v4

Overview


Name	MELO3C023835
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	50S ribosomal protein L23, chloroplastic
Location	chr10: 6050934 .. 6052885 (+)
RNA-Seq Expression	MELO3C023835
Synteny	MELO3C023835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAGGCCCATACTTGAAGAAAATAATGGTCAGGCCCAATCCCCAAACTCACTATTGAAGGCCATATCTAATACCTCCATTTTAGAAACCCTAACTCGGCCGCAGCCTTCCATCTCGCCATTCCTCTCTTCGCAGGTATGAATCTGCCTTCTTCCTTCCATTGCTCTTAATTTTTTGCATATTTCTTCCTCTCTTTTGTTTTGCCTTCCCGGTTTGATTGTTTCTTTTGCTTCTAGCAGGTAAGTTTTTCTGGTCAAGGATCTTCAGCAATGGCACCTAAAGGTATGCATCCTCGCATGCTCACATTCTGATATTGTGTTTGTTTGGGCACTTGATGTTCGTTTATTTCAATTTCTGCTTCCACTCGTTTCAATCGAAAATGGATGTCGTAAATACGTTCTTGATAATACGGAATCTAGTTTCTTAAATCTACTTTTGCTCTGAAGTAAAAGAACTAGTGGTTGGTGAATGGGATTTTAGTATCGTATTGCAAAAGAGAGAACTGGAGGAGAGTAACTAGTTGAAGTGAGCTAACTCCATCTGGATTTTGCAGTTTGATTTGGATGTAAATCTTTTATTTTGTTTTGTTTTATTTAATACACTTCTTTTCAAGCGTTTTAGATGGAAGAAGAACATTTTGATGAGGTTTACTTGAATTTTTATGTGTGTATTGTATTGAATTGAATCTGAGCTATCTAGACTGCGCTGGGTAGGTTTGAGCTTTGTTTTTCTTTCTGTTGTTAATGTAAGGGTTTTTGTTTCTTCTTTTGCAGCCGACAGTAGCAAAAAGGCTGATCCCAAGGCTCAGGCCTTGAAGACTGCTAAGGCAGTCAAATCTGGCCCAACTTTCAAGAAGAAGGCTAAGAAGATTAGAACTTCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTACCCTAGGATCAGTGTTACTCCAAGGAACAAGTTGGATCAGTATCAAATTCTGAAATATCCATTGACCACAGAGTCTGCAATGAAGAAGATTGAGGACAATAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAGAATATTAAAGATGCTGTCAAGAAGATGTATGATATTCAGACCAAGAAAGTTAACACTTTAATCAGGTATGTACGGTTCATTTGTTGTTTGAGCCTGATTTTGCTTATTACTTTACTTAACACCGTTAAATGTACGAATACTCTATTGATTGATCCATTTGTGATGATGAATGATTTATGTTTTAATGTATGCTTCAACAACGTTACTGGTATGCAGACCCGACGGAACGAAGAAAGCATATGTTAGGTTGACTCCAGATTATGATGCTCTTGATGTGGCAAACAAGATTGGTATCATCTAAACTTCAGAGCTTGGAGCGAACGTTTTCATTGCAATTTGTTACATGTTTAAATTTTGGAGAGGATTTTGTAGTAGGACCCTAGTTTTATTTTAGCTTCCTTTTTAATATGTATTGGTAATTGTTTGCTCAGATAGACTGGGTTCACAATACTTGGAATGTTGGAATATACATTCCAACCATTTTCATTATAGCTTGCTTCAGACTCCATTACATCATTACTGAATTTTTGGTTTTTACATCTTCTCGTTGGTTTTTTAATATTTAGTTTCCAATTGTTCGGGCCCCAAGCATTTTCTCGTAGTGTTTGGGGATTGTTCCGTGCTGAATCAATGTACTATGGAGTATAATGGTATTGGCAATTAACATAACAATATGCTAATTGAATTATATAGTGGGGCTTTCCCTTGAAGTGTTGTATTAGGAATTTTAGAGTAACTAAAGACTTCAGTGTCAGAGAACTAATGTTTTCAACTCTACACTGGAATTTTGTTTTAAGATTTTATTTATACGCAGAGATAGAAATCGTCTAGTGCTTTGCAATCATATATATTTCTATTGGGTTAAAATTATAGCTTGGAC

mRNA sequence

GCCAGGCCCATACTTGAAGAAAATAATGGTCAGGCCCAATCCCCAAACTCACTATTGAAGGCCATATCTAATACCTCCATTTTAGAAACCCTAACTCGGCCGCAGCCTTCCATCTCGCCATTCCTCTCTTCGCAGGTAAGTTTTTCTGGTCAAGGATCTTCAGCAATGGCACCTAAAGCCGACAGTAGCAAAAAGGCTGATCCCAAGGCTCAGGCCTTGAAGACTGCTAAGGCAGTCAAATCTGGCCCAACTTTCAAGAAGAAGGCTAAGAAGATTAGAACTTCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTACCCTAGGATCAGTGTTACTCCAAGGAACAAGTTGGATCAGTATCAAATTCTGAAATATCCATTGACCACAGAGTCTGCAATGAAGAAGATTGAGGACAATAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAGAATATTAAAGATGCTGTCAAGAAGATGTATGATATTCAGACCAAGAAAGTTAACACTTTAATCAGACCCGACGGAACGAAGAAAGCATATGTTAGGTTGACTCCAGATTATGATGCTCTTGATGTGGCAAACAAGATTGGTATCATCTAAACTTCAGAGCTTGGAGCGAACGTTTTCATTGCAATTTGTTACATGTTTAAATTTTGGAGAGGATTTTGTAGTAGGACCCTAGTTTTATTTTAGCTTCCTTTTTAATATGTATTGGTAATTGTTTGCTCAGATAGACTGGGTTCACAATACTTGGAATGTTGGAATATACATTCCAACCATTTTCATTATAGCTTGCTTCAGACTCCATTACATCATTACTGAATTTTTGGTTTTTACATCTTCTCGTTGGTTTTTTAATATTTAGTTTCCAATTGTTCGGGCCCCAAGCATTTTCTCGTAGTGTTTGGGGATTGTTCCGTGCTGAATCAATGTACTATGGAGTATAATGGTATTGGCAATTAACATAACAATATGCTAATTGAATTATATAGTGGGGCTTTCCCTTGAAGTGTTGTATTAGGAATTTTAGAGTAACTAAAGACTTCAGTGTCAGAGAACTAATGTTTTCAACTCTACACTGGAATTTTGTTTTAAGATTTTATTTATACGCAGAGATAGAAATCGTCTAGTGCTTTGCAATCATATATATTTCTATTGGGTTAAAATTATAGCTTGGAC

Coding sequence (CDS)

GCCAGGCCCATACTTGAAGAAAATAATGGTCAGGCCCAATCCCCAAACTCACTATTGAAGGCCATATCTAATACCTCCATTTTAGAAACCCTAACTCGGCCGCAGCCTTCCATCTCGCCATTCCTCTCTTCGCAGGTAAGTTTTTCTGGTCAAGGATCTTCAGCAATGGCACCTAAAGCCGACAGTAGCAAAAAGGCTGATCCCAAGGCTCAGGCCTTGAAGACTGCTAAGGCAGTCAAATCTGGCCCAACTTTCAAGAAGAAGGCTAAGAAGATTAGAACTTCAGTCACATTCCATAGGCCAAAGACATTGAAGAAGGATAGGAATCCCAAGTACCCTAGGATCAGTGTTACTCCAAGGAACAAGTTGGATCAGTATCAAATTCTGAAATATCCATTGACCACAGAGTCTGCAATGAAGAAGATTGAGGACAATAACACCCTTGTCTTTATTGTTGACATTCGTGCCAACAAGAAGAATATTAAAGATGCTGTCAAGAAGATGTATGATATTCAGACCAAGAAAGTTAACACTTTAATCAGACCCGACGGAACGAAGAAAGCATATGTTAGGTTGACTCCAGATTATGATGCTCTTGATGTGGCAAACAAGATTGGTATCATCTAA

Protein sequence

ARPILEENNGQAQSPNSLLKAISNTSILETLTRPQPSISPFLSSQVSFSGQGSSAMAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII

Homology

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BLAST of MELO3C023835 vs. NCBI nr
Match: KAG7031627.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301.2 bits (770), Expect = 6.9e-78
Identity = 161/172 (93.60%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 37  SISPFLSSQVSFSGQGSSAMAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSV 96
           S+SP  SS+V +SG GSSAMAPKADS KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSV
Sbjct: 14  SVSPSFSSKVDYSGPGSSAMAPKADSIKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSV 73

Query: 97  TFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA 156
           TFHRPKTLKKDRNPKYPRIS TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA
Sbjct: 74  TFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA 133

Query: 157 NKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           +KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 134 DKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 185

[Close]

BLAST of MELO3C023835 vs. NCBI nr
Match: KAG6601015.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 295.0 bits (754), Expect = 4.9e-76
Identity = 161/188 (85.64%), Postives = 167/188 (88.83%), Query Frame = 0


Query: 18  LLKAISNTSILETLTRPQPSISPFLSSQVSFSGQGSSAMAPKADSSKKADPKAQALKTAK 77
           LL +I N            S+SP  SS+V +SG GSSAMAPKAD+ KKADPKAQALKTAK
Sbjct: 220 LLYSIVNDLPFRNPNSAATSVSPSFSSKVDYSGPGSSAMAPKADTIKKADPKAQALKTAK 279

Query: 78  AVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTES 137
           AVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS TPRNKLDQYQILKYPLTTES
Sbjct: 280 AVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTES 339

Query: 138 AMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYD 197
           AMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYD
Sbjct: 340 AMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYD 399

Query: 198 ALDVANKI 206
           ALDVANKI
Sbjct: 400 ALDVANKI 407

[Close]

BLAST of MELO3C023835 vs. NCBI nr
Match: KAG6600068.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-75
Identity = 159/191 (83.25%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 18  LLKAISNTSILETLTRPQPSISPFLSSQVSFSGQGSSAMAPKADSSKKADPKAQALKTAK 77
           L++    T ++ +  R   +   F   +V +SG GSSAMAPKADSSKKADPKAQALK AK
Sbjct: 14  LVRRRLKTQVVYSKNRTLRTKPKFFEIEVGYSGPGSSAMAPKADSSKKADPKAQALKAAK 73

Query: 78  AVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRNKLDQYQILKYPLTTES 137
           AVK+GPTFK KAKKIRTSVTFHRPKTLKKDRNPKYPRIS TPRNKLDQYQILKYPLTTES
Sbjct: 74  AVKAGPTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTES 133

Query: 138 AMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYD 197
           AMKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYD
Sbjct: 134 AMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYD 193

Query: 198 ALDVANKIGII 209
           ALDVANKIGII
Sbjct: 194 ALDVANKIGII 204

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BLAST of MELO3C023835 vs. NCBI nr
Match: XP_004147702.1 (60S ribosomal protein L23a [Cucumis sativus] >XP_008461635.1 PREDICTED: 60S ribosomal protein L23a [Cucumis melo] >KAA0050284.1 60S ribosomal protein L23a-like [Cucumis melo var. makuwa] >KAE8647979.1 hypothetical protein Csa_000656 [Cucumis sativus] >TYK14757.1 60S ribosomal protein L23a-like [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 2.1e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 56  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 115
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 116 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 175
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 176 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MELO3C023835 vs. NCBI nr
Match: XP_038891458.1 (60S ribosomal protein L23a [Benincasa hispida])

HSP 1 Score: 286.2 bits (731), Expect = 2.3e-73
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 56  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 115
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 116 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 175
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIK AVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKYAVKKMYDIQTKK 120

Query: 176 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MELO3C023835 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.3e-67
Identity = 139/154 (90.26%), Postives = 143/154 (92.86%), Query Frame = 0


Query: 56  MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           M+P K D +KK+D KAQALKTAKAVKSG T  KK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MELO3C023835 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 2.8e-66
Identity = 137/154 (88.96%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 56  MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           MAP KAD SKK+DPKAQA K AKAVKSG T KKK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS   RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+A+KK IKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MELO3C023835 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.3e-65
Identity = 136/154 (88.31%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 56  MAPKADSSKKADPKAQALKTAKAVKSG-PTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           MAP A  +KK D KAQALK AKAVKSG  T +KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS  PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154

[Close]

BLAST of MELO3C023835 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 248.1 bits (632), Expect = 9.0e-65
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 56  MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           M+P K D++KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MELO3C023835 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-63
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 56  MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           M+P K D +KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MELO3C023835 vs. ExPASy TrEMBL
Match: A0A0A0KS61 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180850 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.6e-101
Identity = 203/207 (98.07%), Postives = 205/207 (99.03%), Query Frame = 0


Query: 2   RPILEENNGQAQSPNSLLKAISNTSILETLTRPQPSISPFLSSQVSFSGQGSSAMAPKAD 61
           RPILEENNGQAQ P+SLLKAISN+SILETL RPQPSISPFLSSQVSFSGQGSSAMAPKAD
Sbjct: 6   RPILEENNGQAQYPSSLLKAISNSSILETLIRPQPSISPFLSSQVSFSGQGSSAMAPKAD 65

Query: 62  SSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRN 121
           SSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRN
Sbjct: 66  SSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISVTPRN 125

Query: 122 KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIR 181
           KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIR
Sbjct: 126 KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKKVNTLIR 185

Query: 182 PDGTKKAYVRLTPDYDALDVANKIGII 209
           PDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 186 PDGTKKAYVRLTPDYDALDVANKIGII 212

[Close]

BLAST of MELO3C023835 vs. ExPASy TrEMBL
Match: A0A5A7U4W7 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3369G00030 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.0e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 56  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 115
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 116 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 175
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 176 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MELO3C023835 vs. ExPASy TrEMBL
Match: A0A1S3CFM9 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500191 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.0e-74
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 56  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 115
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 116 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 175
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 120

Query: 176 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MELO3C023835 vs. ExPASy TrEMBL
Match: A0A6J1K8U2 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491145 PE=3 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 5.5e-73
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 56  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 115
           MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 116 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 175
           S TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 176 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MELO3C023835 vs. ExPASy TrEMBL
Match: A0A5D3C5W3 (50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002640 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 1.2e-72
Identity = 149/153 (97.39%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 56  MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 115
           MAPKADS+KKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKK+RNPKYPRI
Sbjct: 1   MAPKADSTKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKERNPKYPRI 60

Query: 116 SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTKK 175
           SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTKK
Sbjct: 61  SVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 176 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 VNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 153

[Close]

BLAST of MELO3C023835 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 248.1 bits (632), Expect = 6.4e-66
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 56  MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           M+P K D++KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MELO3C023835 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 248.1 bits (632), Expect = 6.4e-66
Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0


Query: 56  MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           M+P K D++KKADPKA+ALK AKAVKSG  FKKK KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MELO3C023835 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 244.6 bits (623), Expect = 7.1e-65
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 56  MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           M+P K D +KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MELO3C023835 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 244.6 bits (623), Expect = 7.1e-65
Identity = 133/154 (86.36%), Postives = 138/154 (89.61%), Query Frame = 0


Query: 56  MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           M+P K D +KKADPKA+ALK AKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154

[Close]

BLAST of MELO3C023835 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 233.4 bits (594), Expect = 1.6e-61
Identity = 129/154 (83.77%), Postives = 134/154 (87.01%), Query Frame = 0


Query: 56  MAP-KADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPR 115
           M+P K D +KKADPKA+ALK AKAVKSG        KIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI------KIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 116 ISVTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKNIKDAVKKMYDIQTK 175
           IS TPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KK IKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 176 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 209
           KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 121 KVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 148

The following BLAST results are available for this feature:

BLAST of MELO3C023835 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031627.1	6.9e-78	93.60	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601015.1	4.9e-76	85.64	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG6600068.1	1.4e-75	83.25	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004147702.1	2.1e-74	100.00	60S ribosomal protein L23a [Cucumis sativus] >XP_008461635.1 PREDICTED: 60S ribo...	[more]
XP_038891458.1	2.3e-73	99.35	60S ribosomal protein L23a [Benincasa hispida]	[more]

BLAST of MELO3C023835 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AT35	3.3e-67	90.26	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
Q07761	2.8e-66	88.96	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]
O22644	5.3e-65	88.31	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]
Q8LD46	9.0e-65	87.01	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
Q9M3C3	1.0e-63	86.36	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]

BLAST of MELO3C023835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS61	1.6e-101	98.07	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G180...	[more]
A0A5A7U4W7	1.0e-74	100.00	50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CFM9	1.0e-74	100.00	50S ribosomal protein L23, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500191...	[more]
A0A6J1K8U2	5.5e-73	98.04	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5D3C5W3	1.2e-72	97.39	50S ribosomal protein L23, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of MELO3C023835 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39460.1	6.4e-66	87.01	ribosomal protein L23AA	[more]
AT2G39460.2	6.4e-66	87.01	ribosomal protein L23AA	[more]
AT3G55280.1	7.1e-65	86.36	ribosomal protein L23AB	[more]
AT3G55280.2	7.1e-65	86.36	ribosomal protein L23AB	[more]
AT3G55280.3	1.6e-61	83.77	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 89..208 e-value: 2.7E-53 score: 181.2
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 128..189 e-value: 5.4E-15 score: 55.5
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 56..208
IPR013025	Ribosomal protein L25/L23	HAMAP	MF_01369_A	Ribosomal_L23_A	coord: 128..208 score: 22.516167
IPR019985	Ribosomal protein L23	TIGRFAM	TIGR03636	TIGR03636	coord: 132..208 e-value: 4.1E-29 score: 98.7
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 69..117 e-value: 2.6E-18 score: 66.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..58
None	No IPR available	PANTHER	PTHR11620:SF81	RIBOSOMAL PROTEIN L23A, PUTATIVE-RELATED	coord: 56..208
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 186..201
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 126..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023835.1	MELO3C023835.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome