MELO3C023793.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C023793.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionReverse transcriptase
Locationchr06: 17664668 .. 17664961 (+)
RNA-Seq ExpressionMELO3C023793.jh1
SyntenyMELO3C023793.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAGTCATCCAGAAAAGAAATATGGCATAGAACGACTTAAGGCTCTAGGAGACCCTAGGTTCAACATATCCGACAGATGCCGAGGCATGGTTAAGCATGGTAGAAAGTGCTTCGATGTGATGGACTACACAGAAGGGAGGAAGGTTAAGCTAGCCACTTTCCTACTACAGAAAGAAGCGGATGGATGGTGGAAGTACATCTTCGTTAGACGCAGTGACGCCAAGTTACTAGGATTGGCAAACCTTCAGGGGCATTTCCAAGGACAAGTACTATCCGAGTACTTATTGTGA

mRNA sequence

ATGCCAAGTCATCCAGAAAAGAAATATGGCATAGAACGACTTAAGGCTCTAGGAGACCCTAGGTTCAACATATCCGACAGATGCCGAGGCATGGTTAAGCATGGTAGAAAGTGCTTCGATGTGATGGACTACACAGAAGGGAGGAAGGTTAAGCTAGCCACTTTCCTACTACAGAAAGAAGCGGATGGATGGTGGAAGTACATCTTCGTTAGACGCAGTGACGCCAAGTTACTAGGATTGGCAAACCTTCAGGGGCATTTCCAAGGACAAGTACTATCCGAGTACTTATTGTGA

Coding sequence (CDS)

ATGCCAAGTCATCCAGAAAAGAAATATGGCATAGAACGACTTAAGGCTCTAGGAGACCCTAGGTTCAACATATCCGACAGATGCCGAGGCATGGTTAAGCATGGTAGAAAGTGCTTCGATGTGATGGACTACACAGAAGGGAGGAAGGTTAAGCTAGCCACTTTCCTACTACAGAAAGAAGCGGATGGATGGTGGAAGTACATCTTCGTTAGACGCAGTGACGCCAAGTTACTAGGATTGGCAAACCTTCAGGGGCATTTCCAAGGACAAGTACTATCCGAGTACTTATTGTGA

Protein sequence

MPSHPEKKYGIERLKALGDPRFNISDRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKEADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL
Homology
[Close]
BLAST of MELO3C023793.jh1 vs. NCBI nr
Match: TYK11675.1 (uncharacterized protein E5676_scaffold828G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 207 bits (526), Expect = 2.07e-67
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MPSHPEKKYGIERLKALGDPRFNISDRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE 60
          MPSHPEKKYGIERLKALGDPRFNISDRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE
Sbjct: 1  MPSHPEKKYGIERLKALGDPRFNISDRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE 60

Query: 61 ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL 97
          ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL
Sbjct: 61 ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL 97

[Close]
BLAST of MELO3C023793.jh1 vs. NCBI nr
Match: KAA0051018.1 (uncharacterized protein E6C27_scaffold2606G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 3.19e-20
Identity = 49/90 (54.44%), Postives = 55/90 (61.11%), Query Frame = 0 

Query: 2   PSHPEKKYGIERLKALGDPRFNISDR---CRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PEK YGIERLK LG   F  S         +    KCFDVM+  E RKV+LATFLLQ
Sbjct: 57  PSDPEKAYGIERLKKLGATAFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQ 116

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 88
           KEA+GWWK I  RRSDA  L     +G F+
Sbjct: 117 KEAEGWWKSILARRSDAHALDWQTFRGIFE 146

[Close]
BLAST of MELO3C023793.jh1 vs. NCBI nr
Match: TYK16003.1 (uncharacterized protein E5676_scaffold12915G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 4.51e-20
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 2   PSHPEKKYGIERLKALGDPRFNISDR---CRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PEK YGIERLK LG   F  S         +    KCFDV++  E RKV+LATFLLQ
Sbjct: 42  PSDPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVINCPEERKVRLATFLLQ 101

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 88
           KEA+GWWK I  RRSDA+ L     +G F+
Sbjct: 102 KEAEGWWKSILARRSDARALDWQTFRGIFE 131

[Close]
BLAST of MELO3C023793.jh1 vs. NCBI nr
Match: KAA0066350.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 7.76e-20
Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 0 

Query: 2   PSHPEKKYGIERLKALGDPRFNIS-DRC--RGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PEK YGIERLK LG   F  S DR      +    KCFDVM+  E RKV+LATFLLQ
Sbjct: 63  PSDPEKAYGIERLKKLGATVFEGSTDRADAENWLNMLEKCFDVMNCPEERKVRLATFLLQ 122

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQGQ 90
           KEA+GWWK I  RRSDA+ L     +G F+ Q
Sbjct: 123 KEAEGWWKSILARRSDARALDWKTFRGIFEDQ 154

[Close]
BLAST of MELO3C023793.jh1 vs. NCBI nr
Match: KAA0040276.1 (uncharacterized protein E6C27_scaffold2379G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 8.67e-20
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 2   PSHPEKKYGIERLKALGDPRFNISDR---CRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS P+K YGIERLK LG   F  S         +    KCFDVM++ E RKV+LATFLLQ
Sbjct: 95  PSDPKKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQ 154

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 88
           KEA+GWWK I  RRSDA+ L     +G F+
Sbjct: 155 KEAEGWWKSILARRSDARALDWQTFRGIFE 184

[Close]
BLAST of MELO3C023793.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CJG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00490 PE=4 SV=1)

HSP 1 Score: 207 bits (526), Expect = 1.00e-67
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MPSHPEKKYGIERLKALGDPRFNISDRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE 60
          MPSHPEKKYGIERLKALGDPRFNISDRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE
Sbjct: 1  MPSHPEKKYGIERLKALGDPRFNISDRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE 60

Query: 61 ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL 97
          ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL
Sbjct: 61 ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL 97

[Close]
BLAST of MELO3C023793.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U6V8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00480 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.55e-20
Identity = 49/90 (54.44%), Postives = 55/90 (61.11%), Query Frame = 0 

Query: 2   PSHPEKKYGIERLKALGDPRFNISDR---CRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PEK YGIERLK LG   F  S         +    KCFDVM+  E RKV+LATFLLQ
Sbjct: 57  PSDPEKAYGIERLKKLGATAFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQ 116

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 88
           KEA+GWWK I  RRSDA  L     +G F+
Sbjct: 117 KEAEGWWKSILARRSDAHALDWQTFRGIFE 146

[Close]
BLAST of MELO3C023793.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CVV8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold12915G00010 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.18e-20
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 0 

Query: 2   PSHPEKKYGIERLKALGDPRFNISDR---CRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PEK YGIERLK LG   F  S         +    KCFDV++  E RKV+LATFLLQ
Sbjct: 42  PSDPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVINCPEERKVRLATFLLQ 101

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 88
           KEA+GWWK I  RRSDA+ L     +G F+
Sbjct: 102 KEAEGWWKSILARRSDARALDWQTFRGIFE 131

[Close]
BLAST of MELO3C023793.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VGR2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004150 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.76e-20
Identity = 52/92 (56.52%), Postives = 59/92 (64.13%), Query Frame = 0 

Query: 2   PSHPEKKYGIERLKALGDPRFNIS-DRC--RGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PEK YGIERLK LG   F  S DR      +    KCFDVM+  E RKV+LATFLLQ
Sbjct: 63  PSDPEKAYGIERLKKLGATVFEGSTDRADAENWLNMLEKCFDVMNCPEERKVRLATFLLQ 122

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQGQ 90
           KEA+GWWK I  RRSDA+ L     +G F+ Q
Sbjct: 123 KEAEGWWKSILARRSDARALDWKTFRGIFEDQ 154

[Close]
BLAST of MELO3C023793.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TDV9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00050 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.20e-20
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 0 

Query: 2   PSHPEKKYGIERLKALGDPRFNISDR---CRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS P+K YGIERLK LG   F  S         +    KCFDVM++ E RKV+LATFLLQ
Sbjct: 95  PSDPKKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQ 154

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 88
           KEA+GWWK I  RRSDA+ L     +G F+
Sbjct: 155 KEAEGWWKSILARRSDARALDWQTFRGIFE 184

The following BLAST results are available for this feature:
BLAST of MELO3C023793.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11675.12.07e-67100.00uncharacterized protein E5676_scaffold828G00490 [Cucumis melo var. makuwa][more]
KAA0051018.13.19e-2054.44uncharacterized protein E6C27_scaffold2606G00480 [Cucumis melo var. makuwa][more]
TYK16003.14.51e-2053.33uncharacterized protein E5676_scaffold12915G00010 [Cucumis melo var. makuwa][more]
KAA0066350.17.76e-2056.52DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0040276.18.67e-2053.33uncharacterized protein E6C27_scaffold2379G00050 [Cucumis melo var. makuwa][more]
BLAST of MELO3C023793.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C023793.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CJG01.00e-67100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U6V81.55e-2054.44Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3CVV82.18e-2053.33Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7VGR23.76e-2056.52Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21... [more]
A0A5A7TDV94.20e-2053.33Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of MELO3C023793.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023793.jh1.t1MELO3C023793.jh1.t1mRNA