MELO3C023793 (gene) Melon (DHL92) v4

Overview
NameMELO3C023793
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase
Locationchr06: 18321762 .. 18322055 (-)
RNA-Seq ExpressionMELO3C023793
SyntenyMELO3C023793
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAGTCATCCAGAAAATAAATATGGCATAGAACGACTTAAGGCTCTAGGAGACCCTAGGTTCAACAGATCCAACAGATGCCGAGGCATGGTTAAGCATGGTAGAAAGTGCTTCGATGTGATGGACTACACAGAAGGGAGGAAGGTTAAGCTAGCCACTTTCCTACTACAGAAAGAAGCGGATGGATGGTGGAAGTACATCTTCGTTAGACGCAGTGACGCCAAGTTACTAGGATTGGCAAACCTTCAGGGGCATTTCCAAGGACAAGTACTATCCGAGTACTTATTGTGA

mRNA sequence

ATGCCAAGTCATCCAGAAAATAAATATGGCATAGAACGACTTAAGGCTCTAGGAGACCCTAGGTTCAACAGATCCAACAGATGCCGAGGCATGGTTAAGCATGGTAGAAAGTGCTTCGATGTGATGGACTACACAGAAGGGAGGAAGGTTAAGCTAGCCACTTTCCTACTACAGAAAGAAGCGGATGGATGGTGGAAGTACATCTTCGTTAGACGCAGTGACGCCAAGTTACTAGGATTGGCAAACCTTCAGGGGCATTTCCAAGGACAAGTACTATCCGAGTACTTATTGTGA

Coding sequence (CDS)

ATGCCAAGTCATCCAGAAAATAAATATGGCATAGAACGACTTAAGGCTCTAGGAGACCCTAGGTTCAACAGATCCAACAGATGCCGAGGCATGGTTAAGCATGGTAGAAAGTGCTTCGATGTGATGGACTACACAGAAGGGAGGAAGGTTAAGCTAGCCACTTTCCTACTACAGAAAGAAGCGGATGGATGGTGGAAGTACATCTTCGTTAGACGCAGTGACGCCAAGTTACTAGGATTGGCAAACCTTCAGGGGCATTTCCAAGGACAAGTACTATCCGAGTACTTATTGTGA

Protein sequence

MPSHPENKYGIERLKALGDPRFNRSNRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKEADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL
Homology
BLAST of MELO3C023793 vs. NCBI nr
Match: TYK11675.1 (uncharacterized protein E5676_scaffold828G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 200.7 bits (509), Expect = 5.9e-48
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0

Query: 1  MPSHPENKYGIERLKALGDPRFNRSNRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE 60
          MPSHPE KYGIERLKALGDPRFN S+RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE
Sbjct: 1  MPSHPEKKYGIERLKALGDPRFNISDRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE 60

Query: 61 ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL 98
          ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL
Sbjct: 61 ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL 97

BLAST of MELO3C023793 vs. NCBI nr
Match: KAA0066350.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-15
Identity = 49/92 (53.26%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 2   PSHPENKYGIERLKALGDPRFNRSN---RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PE  YGIERLK LG   F  S         +    KCFDVM+  E RKV+LATFLLQ
Sbjct: 63  PSDPEKAYGIERLKKLGATVFEGSTDRADAENWLNMLEKCFDVMNCPEERKVRLATFLLQ 122

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQGQ 91
           KEA+GWWK I  RRSDA+ L     +G F+ Q
Sbjct: 123 KEAEGWWKSILARRSDARALDWKTFRGIFEDQ 154

BLAST of MELO3C023793 vs. NCBI nr
Match: KAA0036143.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 3.8e-15
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 2   PSHPENKYGIERLKALGDPRFNRSN---RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PE  YGIERLK LG   F  S         +K   KCFDVM++ + RKV+LATFLLQ
Sbjct: 57  PSDPEKAYGIERLKKLGATVFEGSTDPADAENWIKILEKCFDVMNFPKKRKVRLATFLLQ 116

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 89
           KEA+GWWK I  RRSDA+       +G F+
Sbjct: 117 KEAEGWWKSILARRSDARAFDWQTFRGIFE 146

BLAST of MELO3C023793 vs. NCBI nr
Match: TYK13502.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 3.8e-15
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 2   PSHPENKYGIERLKALGDPRFNRSN---RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PE  YGIERLK LG   F  S         +K   KCFDVM++ + RKV+LATFLLQ
Sbjct: 57  PSDPEKAYGIERLKKLGATVFEGSTDPADAENWIKILEKCFDVMNFPKKRKVRLATFLLQ 116

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 89
           KEA+GWWK I  RRSDA+       +G F+
Sbjct: 117 KEAEGWWKSILARRSDARAFDWQTFRGIFE 146

BLAST of MELO3C023793 vs. NCBI nr
Match: KAA0042456.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-15
Identity = 48/90 (53.33%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 2   PSHPENKYGIERLKALGDPRFNRSN---RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PE  YGIERLK LG   F  S         +    KCFDVM+  E RKV+LATFLLQ
Sbjct: 57  PSDPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNCPEERKVRLATFLLQ 116

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 89
           KEA+GWWKYI  R SDA+ L     +G F+
Sbjct: 117 KEAEGWWKYILARCSDARALDWQTFRGIFE 146

BLAST of MELO3C023793 vs. ExPASy TrEMBL
Match: A0A5D3CJG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00490 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.8e-48
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 0

Query: 1  MPSHPENKYGIERLKALGDPRFNRSNRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE 60
          MPSHPE KYGIERLKALGDPRFN S+RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE
Sbjct: 1  MPSHPEKKYGIERLKALGDPRFNISDRCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQKE 60

Query: 61 ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL 98
          ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL
Sbjct: 61 ADGWWKYIFVRRSDAKLLGLANLQGHFQGQVLSEYLL 97

BLAST of MELO3C023793 vs. ExPASy TrEMBL
Match: A0A5A7VGR2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G004150 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15
Identity = 49/92 (53.26%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 2   PSHPENKYGIERLKALGDPRFNRSN---RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PE  YGIERLK LG   F  S         +    KCFDVM+  E RKV+LATFLLQ
Sbjct: 63  PSDPEKAYGIERLKKLGATVFEGSTDRADAENWLNMLEKCFDVMNCPEERKVRLATFLLQ 122

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQGQ 91
           KEA+GWWK I  RRSDA+ L     +G F+ Q
Sbjct: 123 KEAEGWWKSILARRSDARALDWKTFRGIFEDQ 154

BLAST of MELO3C023793 vs. ExPASy TrEMBL
Match: A0A5D3CQ39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90G00190 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 2   PSHPENKYGIERLKALGDPRFNRSN---RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PE  YGIERLK LG   F  S         +K   KCFDVM++ + RKV+LATFLLQ
Sbjct: 57  PSDPEKAYGIERLKKLGATVFEGSTDPADAENWIKILEKCFDVMNFPKKRKVRLATFLLQ 116

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 89
           KEA+GWWK I  RRSDA+       +G F+
Sbjct: 117 KEAEGWWKSILARRSDARAFDWQTFRGIFE 146

BLAST of MELO3C023793 vs. ExPASy TrEMBL
Match: A0A5A7SZT6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold338G00560 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.9e-15
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 2   PSHPENKYGIERLKALGDPRFNRSN---RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS PE  YGIERLK LG   F  S         +K   KCFDVM++ + RKV+LATFLLQ
Sbjct: 57  PSDPEKAYGIERLKKLGATVFEGSTDPADAENWIKILEKCFDVMNFPKKRKVRLATFLLQ 116

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 89
           KEA+GWWK I  RRSDA+       +G F+
Sbjct: 117 KEAEGWWKSILARRSDARAFDWQTFRGIFE 146

BLAST of MELO3C023793 vs. ExPASy TrEMBL
Match: A0A5A7TDV9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00050 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 2   PSHPENKYGIERLKALGDPRFNRSN---RCRGMVKHGRKCFDVMDYTEGRKVKLATFLLQ 61
           PS P+  YGIERLK LG   F  S         +    KCFDVM++ E RKV+LATFLLQ
Sbjct: 95  PSDPKKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQ 154

Query: 62  KEADGWWKYIFVRRSDAKLLGLANLQGHFQ 89
           KEA+GWWK I  RRSDA+ L     +G F+
Sbjct: 155 KEAEGWWKSILARRSDARALDWQTFRGIFE 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK11675.15.9e-4896.91uncharacterized protein E5676_scaffold828G00490 [Cucumis melo var. makuwa][more]
KAA0066350.12.3e-1553.26DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0036143.13.8e-1552.22reverse transcriptase [Cucumis melo var. makuwa][more]
TYK13502.13.8e-1552.22reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0042456.16.6e-1553.33DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CJG02.8e-4896.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGR21.1e-1553.26Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21... [more]
A0A5D3CQ391.9e-1552.22Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold90... [more]
A0A5A7SZT61.9e-1552.22Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold33... [more]
A0A5A7TDV93.2e-1552.22Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023793.1MELO3C023793.1mRNA