MELO3C023783.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C023783.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGypsy/ty3 element polyprotein
Locationchr06: 17902357 .. 17902788 (-)
RNA-Seq ExpressionMELO3C023783.jh1
SyntenyMELO3C023783.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTAGACTCCGTGTGGTGGAGCGAAAGTTTCATGGAAGAACTACGGTCTCATCATCGAAAGAGGAAGGGCCCGGCAAAAGAATTTCTAAGAACTACGTGGTCACCTTCGAAGGTCATAAAAGAGGATAGATTACCTCTTCCATTGGGGGGAGTTGATTTAATCCTTGGAATACACTGGCGGAGAACCTTAGGTGTGACAAAGGTGGATTGGAAGAACTTTACCCTAACGATTGGTGTGGGAGAAGAACGATATGAAGGGAAACTCAAGGAGAAGAGAGGTTTCACTAAAATCCTTGCAAAAAAAAAAGGTGGAAGAAGAATCAGTGGAATGAACAAGTCCACCGAATAGAGCATAACAAGGTGAGGACTGAAATTACAGACGATTATAGCGGAGTTAGAGATGGAAGAAGAGTAAGGGGAGAAGTCT

mRNA sequence

ATGGAATTAGACTCCGTGTGGTGGAGCGAAAGTTTCATGGAAGAACTACGGTCTCATCATCGAAAGAGGAAGGGCCCGGCAAAAGAATTTCTAAGAACTACGTGGTCACCTTCGAAGGTCATAAAAGAGGATAGATTACCTCTTCCATTGGGGGGAGTTGATTTAATCCTTGGAATACACTGGCGGAGAACCTTAGGTGTGACAAAGGTGGATTGGAAGAACTTTACCCTAACGATTGGTGTGGGAGAAGAACGATATGAAGGGAAACTCAAGGAGAAGAGAGGTTTCACTAAAATCCTTGCAAAAAAAAAAGGTGGAAGAAGAATCAGTGGAATGAACAAGTCCACCGAATAGAGCATAACAAGGTGAGGACTGAAATTACAGACGATTATAGCGGAGTTAGAGATGGAAGAAGAGTAAGGGGAGAAGTCT

Coding sequence (CDS)

ATGGAATTAGACTCCGTGTGGTGGAGCGAAAGTTTCATGGAAGAACTACGGTCTCATCATCGAAAGAGGAAGGGCCCGGCAAAAGAATTTCTAAGAACTACGTGGTCACCTTCGAAGGTCATAAAAGAGGATAGATTACCTCTTCCATTGGGGGGAGTTGATTTAATCCTTGGAATACACTGGCGGAGAACCTTAGGTGTGACAAAGGTGGATTGGAAGAACTTTACCCTAACGATTGGTGTGGGAGAAGAACGATATGAAGGGAAACTCAAGGAGAAGAGAGGTTTCACTAAAATCCTTGCAAAAAAAAAAGGTGGAAGAAGAATCAGTGGAATGAACAAGTCCACCGAATAG

Protein sequence

MELDSVWWSESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHWRRTLGVTKVDWKNFTLTIGVGEERYEGKLKEKRGFTKILAKKKGGRRISGMNKSTE
Homology
[Close]
BLAST of MELO3C023783.jh1 vs. NCBI nr
Match: KAA0036112.1 (uncharacterized protein E6C27_scaffold338G00120 [Cucumis melo var. makuwa] >TYK27607.1 uncharacterized protein E5676_scaffold86G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 193 bits (491), Expect = 7.20e-60
Identity = 96/110 (87.27%), Postives = 99/110 (90.00%), Query Frame = 0 

Query: 2   ELDSVWWSESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHW 61
           E DSVWWSESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHW
Sbjct: 62  ESDSVWWSESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHW 121

Query: 62  RRTLGVTKVDWKNFTLTIGVGEERYEGKLKEKRGFTKILAKKKGGRRISG 111
           RRTLGVTKVDWKNFTLTIGVGEERYEGKLKEKR     +   + GRR+ G
Sbjct: 122 RRTLGVTKVDWKNFTLTIGVGEERYEGKLKEKRDDYSGV---RDGRRVRG 168

[Close]
BLAST of MELO3C023783.jh1 vs. NCBI nr
Match: KAA0031882.1 (gypsy/ty3 element polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (477), Expect = 1.24e-55
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 0 

Query: 9   SESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHWRRTLGVT 68
           S SF EELRSHH KRKGPAK FLRTTWSP KVIKEDRLPLPLGGVDLILG+ WRRTLGVT
Sbjct: 295 SSSFTEELRSHHGKRKGPAKGFLRTTWSPWKVIKEDRLPLPLGGVDLILGMQWRRTLGVT 354

Query: 69  KVDWKNFTLTIGVGEERYEGKLKEKRGFTKILAKKKGGRRISGMNKS 115
           +VDWKNFTLTIGVGEERY G  KEKRGF KILA+KKGGRRISGMNKS
Sbjct: 355 EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNKS 401

[Close]
BLAST of MELO3C023783.jh1 vs. NCBI nr
Match: KAA0051286.1 (uncharacterized protein E6C27_scaffold2143G00450 [Cucumis melo var. makuwa] >TYK29976.1 uncharacterized protein E5676_scaffold734G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 150 bits (380), Expect = 2.55e-44
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 11  SFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHWRRTLGVTKV 70
           SF EELRSHH K KGPAK FLRTTWSP KVIKEDRLPLPLGGVDLI+G+ W RTL VT+V
Sbjct: 34  SFTEELRSHHGKWKGPAKGFLRTTWSPWKVIKEDRLPLPLGGVDLIIGMQWWRTLSVTEV 93

Query: 71  DWKNFTLTIGVGEERYEGKLKEKRGFTKILAKKK 104
           DWKNFTLTIG G+ERY    KEKRGF KILA+KK
Sbjct: 94  DWKNFTLTIGAGKERYSEGPKEKRGFAKILAEKK 127

[Close]
BLAST of MELO3C023783.jh1 vs. NCBI nr
Match: KAA0037609.1 (kinesin-13A-like [Cucumis melo var. makuwa] >TYK09351.1 kinesin-13A-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.86e-15
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0 

Query: 21  RKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHWRRTLGVTKVDW 72
           R+ +   K FLRTTWS  KV+KEDRLPLPLGGVDLILG+ W+RTLGVT++DW
Sbjct: 934 RRGRAQQKGFLRTTWSSWKVVKEDRLPLPLGGVDLILGMQWQRTLGVTEMDW 985

[Close]
BLAST of MELO3C023783.jh1 vs. NCBI nr
Match: KAA0040843.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK17819.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.44e-08
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 0 

Query: 2   ELDSVWWSESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHW 61
           EL+ V   E+ + ELR+   K    + E     W+    +KED LPL LGGVDLILG+ W
Sbjct: 200 ELEIVEEVEAEVAELRTAEGKGVCESLEVKMNEWT----VKEDFLPLELGGVDLILGMQW 259

Query: 62  RRTLGVTKVDWKNFTLTIGVGEER 85
             +LGVT  DWKN TLT    E++
Sbjct: 260 LYSLGVTVCDWKNLTLTFYDNEKQ 279

[Close]
BLAST of MELO3C023783.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SY26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold86G00250 PE=4 SV=1)

HSP 1 Score: 193 bits (491), Expect = 3.49e-60
Identity = 96/110 (87.27%), Postives = 99/110 (90.00%), Query Frame = 0 

Query: 2   ELDSVWWSESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHW 61
           E DSVWWSESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHW
Sbjct: 62  ESDSVWWSESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHW 121

Query: 62  RRTLGVTKVDWKNFTLTIGVGEERYEGKLKEKRGFTKILAKKKGGRRISG 111
           RRTLGVTKVDWKNFTLTIGVGEERYEGKLKEKR     +   + GRR+ G
Sbjct: 122 RRTLGVTKVDWKNFTLTIGVGEERYEGKLKEKRDDYSGV---RDGRRVRG 168

[Close]
BLAST of MELO3C023783.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SLB5 (Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46346G00030 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 6.02e-56
Identity = 94/107 (87.85%), Postives = 97/107 (90.65%), Query Frame = 0 

Query: 9   SESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHWRRTLGVT 68
           S SF EELRSHH KRKGPAK FLRTTWSP KVIKEDRLPLPLGGVDLILG+ WRRTLGVT
Sbjct: 295 SSSFTEELRSHHGKRKGPAKGFLRTTWSPWKVIKEDRLPLPLGGVDLILGMQWRRTLGVT 354

Query: 69  KVDWKNFTLTIGVGEERYEGKLKEKRGFTKILAKKKGGRRISGMNKS 115
           +VDWKNFTLTIGVGEERY G  KEKRGF KILA+KKGGRRISGMNKS
Sbjct: 355 EVDWKNFTLTIGVGEERYSGGPKEKRGFAKILAEKKGGRRISGMNKS 401

[Close]
BLAST of MELO3C023783.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UAQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold734G00030 PE=4 SV=1)

HSP 1 Score: 150 bits (380), Expect = 1.23e-44
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = 0 

Query: 11  SFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHWRRTLGVTKV 70
           SF EELRSHH K KGPAK FLRTTWSP KVIKEDRLPLPLGGVDLI+G+ W RTL VT+V
Sbjct: 34  SFTEELRSHHGKWKGPAKGFLRTTWSPWKVIKEDRLPLPLGGVDLIIGMQWWRTLSVTEV 93

Query: 71  DWKNFTLTIGVGEERYEGKLKEKRGFTKILAKKK 104
           DWKNFTLTIG G+ERY    KEKRGF KILA+KK
Sbjct: 94  DWKNFTLTIGAGKERYSEGPKEKRGFAKILAEKK 127

[Close]
BLAST of MELO3C023783.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CC04 (Kinesin-13A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G00400 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.01e-16
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 0 

Query: 21  RKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHWRRTLGVTKVDW 72
           R+ +   K FLRTTWS  KV+KEDRLPLPLGGVDLILG+ W+RTLGVT++DW
Sbjct: 934 RRGRAQQKGFLRTTWSSWKVVKEDRLPLPLGGVDLILGMQWQRTLGVTEMDW 985

[Close]
BLAST of MELO3C023783.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TCK3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00700 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 6.95e-09
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 0 

Query: 2   ELDSVWWSESFMEELRSHHRKRKGPAKEFLRTTWSPSKVIKEDRLPLPLGGVDLILGIHW 61
           EL+ V   E+ + ELR+   K    + E     W+    +KED LPL LGGVDLILG+ W
Sbjct: 200 ELEIVEEVEAEVAELRTAEGKGVCESLEVKMNEWT----VKEDFLPLELGGVDLILGMQW 259

Query: 62  RRTLGVTKVDWKNFTLTIGVGEER 85
             +LGVT  DWKN TLT    E++
Sbjct: 260 LYSLGVTVCDWKNLTLTFYDNEKQ 279

The following BLAST results are available for this feature:
BLAST of MELO3C023783.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036112.17.20e-6087.27uncharacterized protein E6C27_scaffold338G00120 [Cucumis melo var. makuwa] >TYK2... [more]
KAA0031882.11.24e-5587.85gypsy/ty3 element polyprotein [Cucumis melo var. makuwa][more]
KAA0051286.12.55e-4479.79uncharacterized protein E6C27_scaffold2143G00450 [Cucumis melo var. makuwa] >TYK... [more]
KAA0037609.11.86e-1571.15kinesin-13A-like [Cucumis melo var. makuwa] >TYK09351.1 kinesin-13A-like [Cucumi... [more]
KAA0040843.11.44e-0845.24Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK17819.1 Ty3/gyp... [more]
BLAST of MELO3C023783.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C023783.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SY263.49e-6087.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SLB56.02e-5687.85Gypsy/ty3 element polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7UAQ51.23e-4479.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CC049.01e-1671.15Kinesin-13A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold249G004... [more]
A0A5A7TCK36.95e-0945.24Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of MELO3C023783.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023783.jh1.t1MELO3C023783.jh1.t1mRNA