MELO3C023781 (gene) Melon (DHL92) v4

Overview
NameMELO3C023781
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTryptophan synthase beta type 2
Locationchr06: 18036059 .. 18036436 (+)
RNA-Seq ExpressionMELO3C023781
SyntenyMELO3C023781
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGTTATTGTGTGAAGGGAAAAAGCGGATATAATGGTATTGAGGGTAGTAGTGAATTTGAAAGCAAAAATAATGAAGTCGTTGAAGATGATGAAGATGAAAGCAACAAATTATGATGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAAGCCCAAAAGCTCATCCAACAGTCCTTGAAATTTGCCGACTCTCCCTCTTCTAAAACTTATGGTTTTTGATTTTTTTTTATATAAATATTAGTTTTTTCTCTTATATCATTCTACCCCTCATATCTACCCCTTCCCTCCCTTCATCACTATATAATTATATATGAACAAAAGTATAAGATAAAATAACATAAGTCTCTTTTCTTTA

mRNA sequence

AGGTTATTGTGTGAAGGGAAAAAGCGGATATAATGGTATTGAGGGTAGTAGTGAATTTGAAAGCAAAAATAATGAAGTCGTTGAAGATGATGAAGATGAAAGCAACAAATTATGATGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAAGCCCAAAAGCTCATCCAACAGTCCTTGAAATTTGCCGACTCTCCCTCTTCTAAAACTTATGGTTTTTGATTTTTTTTTATATAAATATTAGTTTTTTCTCTTATATCATTCTACCCCTCATATCTACCCCTTCCCTCCCTTCATCACTATATAATTATATATGAACAAAAGTATAAGATAAAATAACATAAGTCTCTTTTCTTTA

Coding sequence (CDS)

ATGGTATTGAGGGTAGTAGTGAATTTGAAAGCAAAAATAATGAAGTCGTTGAAGATGATGAAGATGAAAGCAACAAATTATGATGATTATGATAAGATGGAGAAAAGTGAAAGCATGAGAGTTGAAATCAGAAGCAGAAAAGCCCAAAAGCTCATCCAACAGTCCTTGAAATTTGCCGACTCTCCCTCTTCTAAAACTTATGGTTTTTGA

Protein sequence

MVLRVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPSSKTYGF
Homology
BLAST of MELO3C023781 vs. NCBI nr
Match: KAG7036740.1 (hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 88.6 bits (218), Expect = 2.3e-14
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 4  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPS 63
          R+VVNLKAKIMKSLKM   KAT  D YDKMEKSESMRVEIRSRKAQKLIQQ++K ADSPS
Sbjct: 3  RLVVNLKAKIMKSLKM--KKAT--DSYDKMEKSESMRVEIRSRKAQKLIQQTMKIADSPS 62

Query: 64 SKTY 68
          SKTY
Sbjct: 63 SKTY 62

BLAST of MELO3C023781 vs. NCBI nr
Match: RYQ78961.1 (hypothetical protein Ahy_Scaffold8g108431 [Arachis hypogaea] >RYR60310.1 hypothetical protein Ahy_A04g017389 [Arachis hypogaea])

HSP 1 Score: 77.4 bits (189), Expect = 5.3e-11
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 0

Query: 4  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP- 63
          R+VVNLK+KI KSLKMMK  ++ Y  YDKMEKSESMRVEIRSRKA+KLI+ +LK ADSP 
Sbjct: 6  RLVVNLKSKI-KSLKMMKKASSYY--YDKMEKSESMRVEIRSRKARKLIEDTLKIADSPK 65

Query: 64 SSKTYGF 70
          SSKTY F
Sbjct: 66 SSKTYTF 69

BLAST of MELO3C023781 vs. NCBI nr
Match: KHG17548.1 (Titin [Gossypium arboreum])

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 0

Query: 4  RVVVNLKAKIMKSLKMMKMKAT----NYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFA 63
          R+VVNLK+K ++SLKM K K T    +Y  YDKMEK+ESMR+EIRSRKA+KLIQ +LK A
Sbjct: 5  RMVVNLKSK-LRSLKMTKKKPTTTGEHYCYYDKMEKTESMRIEIRSRKARKLIQDTLKIA 64

Query: 64 DSPSSKTYGF 70
          DSP ++T+ F
Sbjct: 65 DSPHTRTFHF 73

BLAST of MELO3C023781 vs. NCBI nr
Match: THG07542.1 (hypothetical protein TEA_003531 [Camellia sinensis var. sinensis])

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 4   RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPS 63
           R+VVNLK+K ++SLK+ K       DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP 
Sbjct: 79  RLVVNLKSK-LRSLKLKK------PDYDKIEKSESMRVEIRSRKARKLVEETLKIADSPK 137

Query: 64  SKTYGF 70
           S+TY F
Sbjct: 139 SRTYAF 137

BLAST of MELO3C023781 vs. NCBI nr
Match: KAF5961406.1 (hypothetical protein HYC85_002615 [Camellia sinensis])

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 4  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPS 63
          R+VVNLK+K ++SLK+ K       DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP 
Sbjct: 26 RLVVNLKSK-LRSLKLKK------PDYDKIEKSESMRVEIRSRKARKLVEETLKIADSPK 84

Query: 64 SKTYGF 70
          S+TY F
Sbjct: 86 SRTYAF 84

BLAST of MELO3C023781 vs. ExPASy TrEMBL
Match: A0A445DAW0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g017389 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.6e-11
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 0

Query: 4  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSP- 63
          R+VVNLK+KI KSLKMMK  ++ Y  YDKMEKSESMRVEIRSRKA+KLI+ +LK ADSP 
Sbjct: 6  RLVVNLKSKI-KSLKMMKKASSYY--YDKMEKSESMRVEIRSRKARKLIEDTLKIADSPK 65

Query: 64 SSKTYGF 70
          SSKTY F
Sbjct: 66 SSKTYTF 69

BLAST of MELO3C023781 vs. ExPASy TrEMBL
Match: A0A0B0NSM2 (Titin OS=Gossypium arboreum OX=29729 GN=F383_02728 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.3e-10
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 0

Query: 4  RVVVNLKAKIMKSLKMMKMKAT----NYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFA 63
          R+VVNLK+K ++SLKM K K T    +Y  YDKMEK+ESMR+EIRSRKA+KLIQ +LK A
Sbjct: 5  RMVVNLKSK-LRSLKMTKKKPTTTGEHYCYYDKMEKTESMRIEIRSRKARKLIQDTLKIA 64

Query: 64 DSPSSKTYGF 70
          DSP ++T+ F
Sbjct: 65 DSPHTRTFHF 73

BLAST of MELO3C023781 vs. ExPASy TrEMBL
Match: A0A7J7IA61 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_002615 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 4  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPS 63
          R+VVNLK+K ++SLK+ K       DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP 
Sbjct: 26 RLVVNLKSK-LRSLKLKK------PDYDKIEKSESMRVEIRSRKARKLVEETLKIADSPK 84

Query: 64 SKTYGF 70
          S+TY F
Sbjct: 86 SRTYAF 84

BLAST of MELO3C023781 vs. ExPASy TrEMBL
Match: A0A4S4DW15 (RNase H domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_003531 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 0

Query: 4   RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPS 63
           R+VVNLK+K ++SLK+ K       DYDK+EKSESMRVEIRSRKA+KL++++LK ADSP 
Sbjct: 79  RLVVNLKSK-LRSLKLKK------PDYDKIEKSESMRVEIRSRKARKLVEETLKIADSPK 137

Query: 64  SKTYGF 70
           S+TY F
Sbjct: 139 SRTYAF 137

BLAST of MELO3C023781 vs. ExPASy TrEMBL
Match: A0A6A2YYL4 (Tryptophan synthase beta type 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111105pilonHSYRG00214 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-09
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 0

Query: 4  RVVVNLKAKIMKSLKMMKMKATNYDDYDKMEKSESMRVEIRSRKAQKLIQQSLKFADSPS 63
          R+VV+LK+K ++SLK MK       DYDK+EKSESMRVEIRSRKA+KLI+++LK ADSP+
Sbjct: 8  RMVVSLKSK-LRSLKTMK------KDYDKVEKSESMRVEIRSRKARKLIERTLKIADSPT 66

Query: 64 SKTYGF 70
          SKT+ F
Sbjct: 68 SKTFAF 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7036740.12.3e-1484.38hypothetical protein SDJN02_00360, partial [Cucurbita argyrosperma subsp. argyro... [more]
RYQ78961.15.3e-1174.63hypothetical protein Ahy_Scaffold8g108431 [Arachis hypogaea] >RYR60310.1 hypothe... [more]
KHG17548.11.7e-0962.86Titin [Gossypium arboreum][more]
THG07542.12.2e-0963.64hypothetical protein TEA_003531 [Camellia sinensis var. sinensis][more]
KAF5961406.12.2e-0963.64hypothetical protein HYC85_002615 [Camellia sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A445DAW02.6e-1174.63Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A04g017389 PE=4 SV=1[more]
A0A0B0NSM28.3e-1062.86Titin OS=Gossypium arboreum OX=29729 GN=F383_02728 PE=4 SV=1[more]
A0A7J7IA611.1e-0963.64Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_002615 PE=4 SV=1[more]
A0A4S4DW151.1e-0963.64RNase H domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 G... [more]
A0A6A2YYL41.9e-0965.15Tryptophan synthase beta type 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34563BNACNNG33880D PROTEINcoord: 4..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023781.1MELO3C023781.1mRNA