MELO3C023631 (gene) Melon (DHL92) v4

Overview
NameMELO3C023631
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionADP-ribosylation factor
Locationchr01: 32179149 .. 32179404 (-)
RNA-Seq ExpressionMELO3C023631
SyntenyMELO3C023631
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCTTCAAATTATTCTAATATAAGATCGAGTTTTGCTGTTGTTGTCAAGGGAAATGTCGTCTCTTTTGATGTTATTGAAGGCTTTAATGGGAGTCTATGGAGATGATGAAGATCTTGAGAGGAAGGTTGTTGATGGATTATCTGAGTTTGAGTTTTTGAGCTGTGTAACTATGGAGGGTGGTGGTGGAGATGAGGATGAAGAGGAGTTGAAGAAGATATGGAAGTTGCTTGGAGAGAGCTGTCTTTGGCCTTGA

mRNA sequence

AAACCTTCAAATTATTCTAATATAAGATCGAGTTTTGCTGTTGTTGTCAAGGGAAATGTCGTCTCTTTTGATGTTATTGAAGGCTTTAATGGGAGTCTATGGAGATGATGAAGATCTTGAGAGGAAGGTTGTTGATGGATTATCTGAGTTTGAGTTTTTGAGCTGTGTAACTATGGAGGGTGGTGGTGGAGATGAGGATGAAGAGGAGTTGAAGAAGATATGGAAGTTGCTTGGAGAGAGCTGTCTTTGGCCTTGA

Coding sequence (CDS)

ATGTCGTCTCTTTTGATGTTATTGAAGGCTTTAATGGGAGTCTATGGAGATGATGAAGATCTTGAGAGGAAGGTTGTTGATGGATTATCTGAGTTTGAGTTTTTGAGCTGTGTAACTATGGAGGGTGGTGGTGGAGATGAGGATGAAGAGGAGTTGAAGAAGATATGGAAGTTGCTTGGAGAGAGCTGTCTTTGGCCTTGA

Protein sequence

MSSLLMLLKALMGVYGDDEDLERKVVDGLSEFEFLSCVTMEGGGGDEDEEELKKIWKLLGESCLWP
Homology
BLAST of MELO3C023631 vs. NCBI nr
Match: KAA0058539.1 (ADP-ribosylation factor [Cucumis melo var. makuwa] >TYJ96895.1 ADP-ribosylation factor [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 5.6e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 9   KALMGVYGDDEDLERKVVDGLSEFEFLSCVTMEGGGGDEDEEELKKIWKLLGESCLWP 67
           KALMGVYGDDEDLERKVVDGLSEFEFLSCVTMEGGGGDEDEEELKKIWKLLGESCLWP
Sbjct: 180 KALMGVYGDDEDLERKVVDGLSEFEFLSCVTMEGGGGDEDEEELKKIWKLLGESCLWP 237

BLAST of MELO3C023631 vs. NCBI nr
Match: KGN45042.1 (hypothetical protein Csa_016734 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 8.7e-19
Identity = 55/72 (76.39%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 1  MSSLLMLLKALMGVYGDDEDLE------RKVVDGLSEFEFLSCVTMEGGGGDEDEEELKK 60
          MSSLLMLLKALMG YGDDEDLE       + VDGLSEFEFLS     GGGGDED EELKK
Sbjct: 1  MSSLLMLLKALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSL----GGGGDEDGEELKK 60

Query: 61 IWKLLGESCLWP 67
          IWKLLGE+CLWP
Sbjct: 61 IWKLLGENCLWP 68

BLAST of MELO3C023631 vs. NCBI nr
Match: KAG6593257.1 (hypothetical protein SDJN03_12733, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-09
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 0

Query: 1  MSSLLMLLKALMGVYG----DDEDLER-----KVVDGL---SEFEFLSCVTMEGGGGDED 60
          M+SLL+LLKAL+GVYG    +D+DLER     K +DG    S FEF SCVTM      ED
Sbjct: 1  MASLLVLLKALIGVYGHDDNNDDDLERVGGFEKKLDGSENGSGFEFFSCVTM------ED 60

Query: 61 EEELKKIWKLLGESCLWP 67
           EELKK WKLLG++ +WP
Sbjct: 61 VEELKKTWKLLGQTFVWP 72

BLAST of MELO3C023631 vs. ExPASy TrEMBL
Match: A0A5A7UYF2 (ADP-ribosylation factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold670G00050 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 9   KALMGVYGDDEDLERKVVDGLSEFEFLSCVTMEGGGGDEDEEELKKIWKLLGESCLWP 67
           KALMGVYGDDEDLERKVVDGLSEFEFLSCVTMEGGGGDEDEEELKKIWKLLGESCLWP
Sbjct: 180 KALMGVYGDDEDLERKVVDGLSEFEFLSCVTMEGGGGDEDEEELKKIWKLLGESCLWP 237

BLAST of MELO3C023631 vs. ExPASy TrEMBL
Match: A0A0A0K9K3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414400 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.2e-19
Identity = 55/72 (76.39%), Postives = 57/72 (79.17%), Query Frame = 0

Query: 1  MSSLLMLLKALMGVYGDDEDLE------RKVVDGLSEFEFLSCVTMEGGGGDEDEEELKK 60
          MSSLLMLLKALMG YGDDEDLE       + VDGLSEFEFLS     GGGGDED EELKK
Sbjct: 1  MSSLLMLLKALMGGYGDDEDLEGNGGEFERKVDGLSEFEFLSL----GGGGDEDGEELKK 60

Query: 61 IWKLLGESCLWP 67
          IWKLLGE+CLWP
Sbjct: 61 IWKLLGENCLWP 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0058539.15.6e-26100.00ADP-ribosylation factor [Cucumis melo var. makuwa] >TYJ96895.1 ADP-ribosylation ... [more]
KGN45042.18.7e-1976.39hypothetical protein Csa_016734 [Cucumis sativus][more]
KAG6593257.11.6e-0956.41hypothetical protein SDJN03_12733, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UYF22.7e-26100.00ADP-ribosylation factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K9K34.2e-1976.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G414400 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023631.1MELO3C023631.1mRNA