MELO3C023542 (gene) Melon (DHL92) v4

Overview


Name	MELO3C023542
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	thylakoid lumenal 19 kDa protein, chloroplastic
Location	chr01: 32926244 .. 32927455 (-)
RNA-Seq Expression	MELO3C023542
Synteny	MELO3C023542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAAAAAAAAAGAAACGATTTAGAAAAATAGAGGGAAATAGAAAAGTAATGGATAAGGAGAAAATCCTCTTCGTCAAGATAAACCAGAAGCCCAAATCCACGAAAATCAATCACCATGGCCACCGCAATCGCGCCATTGGCGTTCTTAACCTCCACCGCCGCTTCCACCGGGACAACAGCCCCAAAATCACCGCAAACTTCGCCGCTACCAAAGCCCCAAATTCCCATTCTTCAATCCAAATCTCCACTTTCAATATCAACCGCACCGATCTCCATTGCAGCCACTGCCATCGCCGTAGCCGCGATCCTTAACACCGCTCCACCGTCCCTCGCCGACACCGGGGCCGCTTTCAACGTCTACTACGGCACTGCCGCCAGCGCCGCCAACTACGGTGGCCTTGGCGGAAACGCCAACAAGAAAGACACAGCAGAATACGTATATGACGTGCCGGAAGGATGGAAAGAACGATTAGTATCCAAAGTCGAAAAAGGTACTCCAAAATCACAATCAAAACCCCTAAATGAAAGATATCTAATTGTTCAATTCGTTCCGAAAATCAATTCTACCTTCTCAATTCCGCAGGTACGAACGGAACCGACAGTGAATTTTACAATCCGAAGAAACGATCAGAGAAGGAATACCTAACTTTCCTGGCGGGAATCCGGCAATTAGGGCCGAAGGATGTGATTCTGAATAACCTAGCTTTATCGGACGTGAATTTGCAGGATCAAATCGCGAGCGCCGAGAGCTTCTTGGCGGATGAGAAGAAGGATGAGAATGGACAGGTTTATTATGTGTACGAGATCGACGGCGCCGGAACTCATAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCTCATTTTGTGAATGCGCCGACGCCGGAGTGGAATCGGGACCAGGATATGCTCCGGCACGTTCATGAGTCGTTCAAGACGGTGGGATCGTATTAGATAGCTTTCGTGGCGTCGCCGAAGATTTGATCGGAGAGTGTATGAATTTGTTGTTATATATATATATGCTTATTCTTGAATGATGAGAATCGGATGCTTTTTTTCACCATTCACACTCATCTCTCTCGTCTCTGTTTTATAAATGTTTTTGGAAGATGACTTGTGGATTAAAACTTTATAACATTAGATTAGATGTTCACATCTTTACTTCACTCAAAGTTGATCATACTCAATCCTACTTTTTGGTCTC

mRNA sequence

AAATAAAAAAAAAGAAACGATTTAGAAAAATAGAGGGAAATAGAAAAGTAATGGATAAGGAGAAAATCCTCTTCGTCAAGATAAACCAGAAGCCCAAATCCACGAAAATCAATCACCATGGCCACCGCAATCGCGCCATTGGCGTTCTTAACCTCCACCGCCGCTTCCACCGGGACAACAGCCCCAAAATCACCGCAAACTTCGCCGCTACCAAAGCCCCAAATTCCCATTCTTCAATCCAAATCTCCACTTTCAATATCAACCGCACCGATCTCCATTGCAGCCACTGCCATCGCCGTAGCCGCGATCCTTAACACCGCTCCACCGTCCCTCGCCGACACCGGGGCCGCTTTCAACGTCTACTACGGCACTGCCGCCAGCGCCGCCAACTACGGTGGCCTTGGCGGAAACGCCAACAAGAAAGACACAGCAGAATACGTATATGACGTGCCGGAAGGATGGAAAGAACGATTAGTATCCAAAGTCGAAAAAGGTACGAACGGAACCGACAGTGAATTTTACAATCCGAAGAAACGATCAGAGAAGGAATACCTAACTTTCCTGGCGGGAATCCGGCAATTAGGGCCGAAGGATGTGATTCTGAATAACCTAGCTTTATCGGACGTGAATTTGCAGGATCAAATCGCGAGCGCCGAGAGCTTCTTGGCGGATGAGAAGAAGGATGAGAATGGACAGGTTTATTATGTGTACGAGATCGACGGCGCCGGAACTCATAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCTCATTTTGTGAATGCGCCGACGCCGGAGTGGAATCGGGACCAGGATATGCTCCGGCACGTTCATGAGTCGTTCAAGACGGTGGGATCGTATTAGATAGCTTTCGTGGCGTCGCCGAAGATTTGATCGGAGAGTGTATGAATTTGTTGTTATATATATATATGCTTATTCTTGAATGATGAGAATCGGATGCTTTTTTTCACCATTCACACTCATCTCTCTCGTCTCTGTTTTATAAATGTTTTTGGAAGATGACTTGTGGATTAAAACTTTATAACATTAGATTAGATGTTCACATCTTTACTTCACTCAAAGTTGATCATACTCAATCCTACTTTTTGGTCTC

Coding sequence (CDS)

ATGGCCACCGCAATCGCGCCATTGGCGTTCTTAACCTCCACCGCCGCTTCCACCGGGACAACAGCCCCAAAATCACCGCAAACTTCGCCGCTACCAAAGCCCCAAATTCCCATTCTTCAATCCAAATCTCCACTTTCAATATCAACCGCACCGATCTCCATTGCAGCCACTGCCATCGCCGTAGCCGCGATCCTTAACACCGCTCCACCGTCCCTCGCCGACACCGGGGCCGCTTTCAACGTCTACTACGGCACTGCCGCCAGCGCCGCCAACTACGGTGGCCTTGGCGGAAACGCCAACAAGAAAGACACAGCAGAATACGTATATGACGTGCCGGAAGGATGGAAAGAACGATTAGTATCCAAAGTCGAAAAAGGTACGAACGGAACCGACAGTGAATTTTACAATCCGAAGAAACGATCAGAGAAGGAATACCTAACTTTCCTGGCGGGAATCCGGCAATTAGGGCCGAAGGATGTGATTCTGAATAACCTAGCTTTATCGGACGTGAATTTGCAGGATCAAATCGCGAGCGCCGAGAGCTTCTTGGCGGATGAGAAGAAGGATGAGAATGGACAGGTTTATTATGTGTACGAGATCGACGGCGCCGGAACTCATAGTTTGATATCGGTGACTTGTGCGAAGAACAAGCTGTATGCTCATTTTGTGAATGCGCCGACGCCGGAGTGGAATCGGGACCAGGATATGCTCCGGCACGTTCATGAGTCGTTCAAGACGGTGGGATCGTATTAG

Protein sequence

MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTVGSY

Homology

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BLAST of MELO3C023542 vs. NCBI nr
Match: XP_008461279.1 (PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA0058638.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa] >TYK10445.1 thylakoid lumenal 19 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 480.7 bits (1236), Expect = 7.6e-132
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60
           MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60

Query: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120
           VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV
Sbjct: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 251
           HESFKTVGSY
Sbjct: 241 HESFKTVGSY 250

[Close]

BLAST of MELO3C023542 vs. NCBI nr
Match: XP_038896859.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 454.5 bits (1168), Expect = 5.8e-124
Identity = 232/250 (92.80%), Postives = 241/250 (96.40%), Query Frame = 0


Query: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60
           MATAI PLAF ++ AASTGTTAPK PQT PLPKPQIPILQSK PLS STAPISIAAT IA
Sbjct: 1   MATAITPLAFFSAAAASTGTTAPKPPQTPPLPKPQIPILQSKPPLSTSTAPISIAATTIA 60

Query: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120
           VAAIL+T PPSLADTGAAFNVYYGTAASAANYGGLGGNA+KKDTAEY+YDVPEGWKERLV
Sbjct: 61  VAAILSTTPPSLADTGAAFNVYYGTAASAANYGGLGGNASKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRTEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLA+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 251
           HESFKT+GSY
Sbjct: 241 HESFKTIGSY 250

[Close]

BLAST of MELO3C023542 vs. NCBI nr
Match: XP_004135924.1 (thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KGN45140.1 hypothetical protein Csa_016904 [Cucumis sativus])

HSP 1 Score: 446.8 bits (1148), Expect = 1.2e-121
Identity = 236/250 (94.40%), Postives = 240/250 (96.00%), Query Frame = 0


Query: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60
           MATAIAPLAFLT    STGTTAPK PQ S LPKPQIPILQSK PLS STAPISIAATAIA
Sbjct: 1   MATAIAPLAFLT----STGTTAPKPPQASSLPKPQIPILQSKPPLS-STAPISIAATAIA 60

Query: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120
           VAAIL+TA PSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEY+YDVPEGWKERLV
Sbjct: 61  VAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLA+EKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 251
           H+SFKTVGSY
Sbjct: 241 HDSFKTVGSY 245

[Close]

BLAST of MELO3C023542 vs. NCBI nr
Match: XP_023547955.1 (thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 411.8 bits (1057), Expect = 4.3e-111
Identity = 216/251 (86.06%), Postives = 229/251 (91.24%), Query Frame = 0


Query: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60
           MA AI+PLAF ++ AASTGTTAPK PQ  P  KPQ IPILQSK  LS  TA    A +AI
Sbjct: 1   MAAAISPLAFFSAAAASTGTTAPKLPQIPPPQKPQIIPILQSKPSLSSLTA----AGSAI 60

Query: 61  AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120
           A+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKERL
Sbjct: 61  AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERL 120

Query: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240
           ESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 181 ESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240

Query: 241 VHESFKTVGSY 251
           VHESFKT+GSY
Sbjct: 241 VHESFKTIGSY 247

[Close]

BLAST of MELO3C023542 vs. NCBI nr
Match: KAG6575683.1 (Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014238.1 Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 404.4 bits (1038), Expect = 6.9e-109
Identity = 211/251 (84.06%), Postives = 226/251 (90.04%), Query Frame = 0


Query: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60
           MA  I+PLAF ++ AASTG TAPK PQ  P  KPQ IP+LQSK  LS  TA    A +AI
Sbjct: 1   MAAVISPLAFFSAAAASTGATAPKLPQIPPPQKPQIIPVLQSKPSLSSLTA----AGSAI 60

Query: 61  AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120
           A+A I++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKERL
Sbjct: 61  AIATIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERL 120

Query: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180

Query: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240
           ESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRH
Sbjct: 181 ESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWSRDQDMLRH 240

Query: 241 VHESFKTVGSY 251
           VHESFKT+GSY
Sbjct: 241 VHESFKTIGSY 247

[Close]

BLAST of MELO3C023542 vs. ExPASy Swiss-Prot
Match: P82658 (Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g63540 PE=1 SV=2)

HSP 1 Score: 286.6 bits (732), Expect = 2.8e-76
Identity = 140/208 (67.31%), Postives = 169/208 (81.25%), Query Frame = 0


Query: 44  PLSISTAPISIAATAIAVAAILNTAP--PSLADTGAAFNVYYGTAASAANYGGLGGNANK 103
           P +I++   +  A A+A  ++L   P  P+  +    + +YYGTAASAANYGG GGN+++
Sbjct: 21  PKAIASRLGTSLAAALAATSVLTMVPVLPAAGEGNQTYKIYYGTAASAANYGGYGGNSDR 80

Query: 104 KDTAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVI 163
           K +AEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFLAG RQL P+DVI
Sbjct: 81  KTSAEYVYDVPEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVI 140

Query: 164 LNNLALSDVNLQDQIASAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAH 223
           LNNLALSDV LQD IA A+  +++E+KDE GQVYY+YEIDG G HSLI+VTC+KN+LYAH
Sbjct: 141 LNNLALSDVELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNRLYAH 200

Query: 224 FVNAPTPEWNRDQDMLRHVHESFKTVGS 250
           FVNAP PEWNRD D L H+ +SFKTV S
Sbjct: 201 FVNAPAPEWNRDHDTLTHLRDSFKTVSS 228

[Close]

BLAST of MELO3C023542 vs. ExPASy TrEMBL
Match: A0A5D3CG07 (Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00930 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 3.7e-132
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60
           MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60

Query: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120
           VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV
Sbjct: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 251
           HESFKTVGSY
Sbjct: 241 HESFKTVGSY 250

[Close]

BLAST of MELO3C023542 vs. ExPASy TrEMBL
Match: A0A1S3CES2 (thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499916 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 3.7e-132
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60
           MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA
Sbjct: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60

Query: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120
           VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV
Sbjct: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 251
           HESFKTVGSY
Sbjct: 241 HESFKTVGSY 250

[Close]

BLAST of MELO3C023542 vs. ExPASy TrEMBL
Match: A0A0A0K624 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.9e-122
Identity = 236/250 (94.40%), Postives = 240/250 (96.00%), Query Frame = 0


Query: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQIPILQSKSPLSISTAPISIAATAIA 60
           MATAIAPLAFLT    STGTTAPK PQ S LPKPQIPILQSK PLS STAPISIAATAIA
Sbjct: 1   MATAIAPLAFLT----STGTTAPKPPQASSLPKPQIPILQSKPPLS-STAPISIAATAIA 60

Query: 61  VAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERLV 120
           VAAIL+TA PSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEY+YDVPEGWKERLV
Sbjct: 61  VAAILSTATPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYIYDVPEGWKERLV 120

Query: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180
           SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE
Sbjct: 121 SKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAE 180

Query: 181 SFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240
           SFLA+EKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV
Sbjct: 181 SFLAEEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHV 240

Query: 241 HESFKTVGSY 251
           H+SFKTVGSY
Sbjct: 241 HDSFKTVGSY 245

[Close]

BLAST of MELO3C023542 vs. ExPASy TrEMBL
Match: A0A6J1JN94 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111488417 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 4.4e-109
Identity = 214/251 (85.26%), Postives = 228/251 (90.84%), Query Frame = 0


Query: 1   MATAIAPLAFLTSTAASTGTTAPKSPQTSPLPKPQ-IPILQSKSPLSISTAPISIAATAI 60
           MATAI+PLAF ++ AASTGTTAPK PQ     KPQ IPILQSK  LS  TA    A +AI
Sbjct: 24  MATAISPLAFFSAAAASTGTTAPKLPQ-----KPQIIPILQSKPSLSSLTA----ACSAI 83

Query: 61  AVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKERL 120
           A+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEYVYDVP+GWKERL
Sbjct: 84  AIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNADKKDSAEYVYDVPDGWKERL 143

Query: 121 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 180
           VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA
Sbjct: 144 VSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASA 203

Query: 181 ESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 240
           ESF A+EKKDENGQ+YY YEID AGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH
Sbjct: 204 ESFSAEEKKDENGQIYYEYEIDSAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRH 263

Query: 241 VHESFKTVGSY 251
           VHESFKT+GSY
Sbjct: 264 VHESFKTIGSY 265

[Close]

BLAST of MELO3C023542 vs. ExPASy TrEMBL
Match: A0A6J1H7M1 (thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111460820 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 8.2e-108
Identity = 211/253 (83.40%), Postives = 224/253 (88.54%), Query Frame = 0


Query: 1   MATAIAPLAFLTS-TAASTGTTAPKSPQTSPLPKPQIPILQS--KSPLSISTAPISIAAT 60
           MATAI+PLAF ++  AA+TG   PK  QT PLPKP IP+LQS    PLS  +APIS    
Sbjct: 1   MATAISPLAFFSAGAAATTGAIVPKPSQTPPLPKPLIPVLQSNPSGPLSSLSAPIS---- 60

Query: 61  AIAVAAILNTAPPSLADTGAAFNVYYGTAASAANYGGLGGNANKKDTAEYVYDVPEGWKE 120
           AIAVAAIL+T PPSLAD G AFNVYYGTAASAANYGG GGNA+KKD+AEY+YDVPEGWKE
Sbjct: 61  AIAVAAILSTTPPSLADAGGAFNVYYGTAASAANYGGFGGNASKKDSAEYIYDVPEGWKE 120

Query: 121 RLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIA 180
           RLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL PKDVILNNLALSDVNLQDQIA
Sbjct: 121 RLVSKVEKGTNGTDSEFYNPKKRKEKEYLTFLAGIRQLAPKDVILNNLALSDVNLQDQIA 180

Query: 181 SAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDML 240
           SAE   A+EKKDENGQ+YYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDML
Sbjct: 181 SAEGISAEEKKDENGQIYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWDRDQDML 240

Query: 241 RHVHESFKTVGSY 251
           RHVHESFKTVGSY
Sbjct: 241 RHVHESFKTVGSY 249

[Close]

BLAST of MELO3C023542 vs. TAIR 10
Match: AT3G63540.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 234.6 bits (597), Expect = 8.8e-62
Identity = 109/140 (77.86%), Postives = 123/140 (87.86%), Query Frame = 0


Query: 110 DVPEGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSD 169
           +V EGWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFLAG RQL P+DVILNNLALSD
Sbjct: 3   EVEEGWKERLVSKVEKGTNGTDSEFYNPKKKTEKEYLTFLAGFRQLAPRDVILNNLALSD 62

Query: 170 VNLQDQIASAESFLADEKKDENGQVYYVYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPE 229
           V LQD IA A+  +++E+KDE GQVYY+YEIDG G HSLI+VTC+KNKLYAHFVNAP PE
Sbjct: 63  VELQDLIAGADKVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNKLYAHFVNAPAPE 122

Query: 230 WNRDQDMLRHVHESFKTVGS 250
           WNRD D L H+ +SFKTV S
Sbjct: 123 WNRDHDTLTHLRDSFKTVSS 142

The following BLAST results are available for this feature:

BLAST of MELO3C023542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461279.1	7.6e-132	100.00	PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo] >KAA00...	[more]
XP_038896859.1	5.8e-124	92.80	thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_004135924.1	1.2e-121	94.40	thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis sativus] >KGN45140.1 hy...	[more]
XP_023547955.1	4.3e-111	86.06	thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
KAG6575683.1	6.9e-109	84.06	Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma...	[more]

BLAST of MELO3C023542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82658	2.8e-76	67.31	Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MELO3C023542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CG07	3.7e-132	100.00	Thylakoid lumenal 19 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CES2	3.7e-132	100.00	thylakoid lumenal 19 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0K624	5.9e-122	94.40	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G428280 PE=4 S...	[more]
A0A6J1JN94	4.4e-109	85.26	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1H7M1	8.2e-108	83.40	thylakoid lumenal 19 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=36...	[more]

BLAST of MELO3C023542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63540.1	8.8e-62	77.86	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 104..245 e-value: 1.0E-10 score: 41.9
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 88..246 e-value: 2.5E-17 score: 65.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..37
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 1..247
None	No IPR available	PANTHER	PTHR31407:SF20	THYLAKOID LUMENAL 19 KDA PROTEIN, CHLOROPLASTIC	coord: 1..247
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 103..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023542.1	MELO3C023542.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
molecular_function	GO:0005509	calcium ion binding