MELO3C023447 (gene) Melon (DHL92) v4

Overview
NameMELO3C023447
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionserine-rich protein-related
Locationchr01: 33592458 .. 33593293 (+)
RNA-Seq ExpressionMELO3C023447
SyntenyMELO3C023447
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTCAATTCTCACATGCAAATTAAGGCTATAACTTCCCGTTTCCAATGCCGAACAAAACCGCTTCCTCTTCCCGCCTTTGCCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGCCTCCACCGCCGTCCCTCGAATTCCTCCCACAAGACGCCGCAGCCGCTGCCTCCTCCGCATGGAAGCCAATCGAAGGCGGCAACGACGACGACGGATCATTATTTCCTTAAGGCGTTTCTGATGCAGATCGTAAAGCCGTCGAGTCATGGTCTTCAAAGACGGGGAAATTTCCAGCCTAAACCTTCTCGATTCTGCAATATCGTCTCCGCTCCGGATCCTCGTTTGGCTGTTTCATGATCGTGAATCGCGTACGTATGCATACATATGTGATTCATGGTTTTTGAAATTCTTTATCGATCATTTCTGTTTTTGCGGATGGAATTTAGTGTGTGTTGTGTACAGGGGAACGTGAAATTGAAAACGTGATTAAGCGTTTCTGATCTTCGTTTTGAGATTAATTTATGGAATTGTTAGGGCTTTTGAACTGAAATTGTGTAGTTTGTATATAATTGGAGGATTAGCAGACTGATCTTGTAAATAGTGAGAAAACTACAACTTTTATGAAACATAAAATAGTTTCAAATATTGATTGGAGAAGAAATTATTGAACTTTTGGTTAAAAAGGAAATCTTACGATATTACCCATTGTGTATGAATTAGTTTCGATAATTTAATGACATCAAATAGATTAATTAGTTTCAATTCAAATTATCACTCTGCCATTTTTGAAAGCTCCTCTTGATCATAATCACAATTTAAACTATCACTCTGCC

mRNA sequence

ACTCAATTCTCACATGCAAATTAAGGCTATAACTTCCCGTTTCCAATGCCGAACAAAACCGCTTCCTCTTCCCGCCTTTGCCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGCCTCCACCGCCGTCCCTCGAATTCCTCCCACAAGACGCCGCAGCCGCTGCCTCCTCCGCATGGAAGCCAATCGAAGGCGGCAACGACGACGACGGATCATTATTTCCTTAAGGCGTTTCTGATGCAGATCGTAAAGCCGTCGAGTCATGGTCTTCAAAGACGGGGAAATTTCCAGCCTAAACCTTCTCGATTCTGCAATATCGTCTCCGCTCCGGATCCTCGTTTGGCTGTTTCATGATCGTGAATCGCGTACGTATGCATACATATGTGATTCATGGTTTTTGAAATTCTTTATCGATCATTTCTGTTTTTGCGGATGGAATTTAGTGTGTGTTGTGTACAGGGGAACGTGAAATTGAAAACGTGATTAAGCGTTTCTGATCTTCGTTTTGAGATTAATTTATGGAATTGTTAGGGCTTTTGAACTGAAATTGTGTAGTTTGTATATAATTGGAGGATTAGCAGACTGATCTTGTAAATAGTGAGAAAACTACAACTTTTATGAAACATAAAATAGTTTCAAATATTGATTGGAGAAGAAATTATTGAACTTTTGGTTAAAAAGGAAATCTTACGATATTACCCATTGTGTATGAATTAGTTTCGATAATTTAATGACATCAAATAGATTAATTAGTTTCAATTCAAATTATCACTCTGCCATTTTTGAAAGCTCCTCTTGATCATAATCACAATTTAAACTATCACTCTGCC

Coding sequence (CDS)

ATGCCGAACAAAACCGCTTCCTCTTCCCGCCTTTGCCTCTGTGCTCCGACCACCCATCCCGGCTCTTTCCGCTGCAGCCTCCACCGCCGTCCCTCGAATTCCTCCCACAAGACGCCGCAGCCGCTGCCTCCTCCGCATGGAAGCCAATCGAAGGCGGCAACGACGACGACGGATCATTATTTCCTTAAGGCGTTTCTGATGCAGATCGTAAAGCCGTCGAGTCATGGTCTTCAAAGACGGGGAAATTTCCAGCCTAAACCTTCTCGATTCTGCAATATCGTCTCCGCTCCGGATCCTCGTTTGGCTGTTTCATGA

Protein sequence

MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHYFLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS
Homology
BLAST of MELO3C023447 vs. NCBI nr
Match: XP_008461151.1 (PREDICTED: uncharacterized protein LOC103499822 [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 2.2e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY 60
           MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY
Sbjct: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY 60

Query: 61  FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 105
           FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS
Sbjct: 61  FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 104

BLAST of MELO3C023447 vs. NCBI nr
Match: KAA0058731.1 (uncharacterized protein E6C27_scaffold339G002010 [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY 60
           M NKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY
Sbjct: 1   MANKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY 60

Query: 61  FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 105
           FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS
Sbjct: 61  FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 104

BLAST of MELO3C023447 vs. NCBI nr
Match: KGN45240.1 (hypothetical protein Csa_016736 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.4e-42
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 0

Query: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPP--PHGSQSKAATTTTD 60
           MPNKTASSSRLCLCAPTTHPGSFRCSLHRR SNSSHKTP PLPP  P GSQSKAA TTTD
Sbjct: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTD 60

Query: 61  HYFLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 105
           H+ LKAFLMQIVKPSSH LQRRG+F+PKPSRFC++VSA DPRLAVS
Sbjct: 61  HHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDPRLAVS 105

BLAST of MELO3C023447 vs. NCBI nr
Match: KAG6593379.1 (hypothetical protein SDJN03_12855, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 73/105 (69.52%), Postives = 81/105 (77.14%), Query Frame = 0

Query: 1   MPNKTA-SSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDH 60
           M NKTA SS RLCLCAPTTHPGSFRCSLHRR   +S+K P PLPPP G+QSKA + T   
Sbjct: 1   MANKTAPSSRRLCLCAPTTHPGSFRCSLHRRMRKASNKMP-PLPPP-GNQSKAVSATD-- 60

Query: 61  YFLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 105
             +KAFLMQ++KPSS  LQRR NFQPKPSRFCN  +A D  LAVS
Sbjct: 61  -LVKAFLMQVIKPSSQDLQRRRNFQPKPSRFCN--AASDYGLAVS 98

BLAST of MELO3C023447 vs. NCBI nr
Match: KAG7025727.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.2 bits (313), Expect = 3.4e-25
Identity = 68/96 (70.83%), Postives = 75/96 (78.12%), Query Frame = 0

Query: 1  MPNKTA-SSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDH 60
          M NKTA SS RLCLCAPTTHPGSFRCSLHRR   +S+K P PLPPP G+QSKA + T   
Sbjct: 1  MANKTAPSSRRLCLCAPTTHPGSFRCSLHRRMRKASNKMP-PLPPP-GNQSKAVSATD-- 60

Query: 61 YFLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVS 96
            +KAFLMQ++KPSS  LQRR NFQPKPSRFCN  S
Sbjct: 61 -LVKAFLMQVIKPSSQDLQRRRNFQPKPSRFCNAAS 91

BLAST of MELO3C023447 vs. ExPASy TrEMBL
Match: A0A1S3CEH6 (uncharacterized protein LOC103499822 OS=Cucumis melo OX=3656 GN=LOC103499822 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY 60
           MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY
Sbjct: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY 60

Query: 61  FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 105
           FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS
Sbjct: 61  FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 104

BLAST of MELO3C023447 vs. ExPASy TrEMBL
Match: A0A5A7UZ19 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002010 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.2e-53
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 0

Query: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY 60
           M NKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY
Sbjct: 1   MANKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY 60

Query: 61  FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 105
           FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS
Sbjct: 61  FLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 104

BLAST of MELO3C023447 vs. ExPASy TrEMBL
Match: A0A0A0K698 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432210 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.6e-43
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 0

Query: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPP--PHGSQSKAATTTTD 60
           MPNKTASSSRLCLCAPTTHPGSFRCSLHRR SNSSHKTP PLPP  P GSQSKAA TTTD
Sbjct: 1   MPNKTASSSRLCLCAPTTHPGSFRCSLHRRLSNSSHKTP-PLPPPSPRGSQSKAAATTTD 60

Query: 61  HYFLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 105
           H+ LKAFLMQIVKPSSH LQRRG+F+PKPSRFC++VSA DPRLAVS
Sbjct: 61  HHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDPRLAVS 105

BLAST of MELO3C023447 vs. ExPASy TrEMBL
Match: A0A6J1DD51 (uncharacterized protein LOC111019381 OS=Momordica charantia OX=3673 GN=LOC111019381 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 59/94 (62.77%), Postives = 68/94 (72.34%), Query Frame = 0

Query: 5  TASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDHY---F 64
          +AS+SRLCLCAPTTHPGSFRCSLHRRP  +S K          S++ AA+   D      
Sbjct: 9  SASASRLCLCAPTTHPGSFRCSLHRRPRKASDK----------SKAAAASGGVDWNKTDL 68

Query: 65 LKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVS 96
          +KAFLMQI+KPSSH LQRR NFQPKPSRFCN+ S
Sbjct: 69 VKAFLMQIIKPSSHDLQRRRNFQPKPSRFCNVGS 92

BLAST of MELO3C023447 vs. ExPASy TrEMBL
Match: A0A061G8R4 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_027325 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.2e-17
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 7   SSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAA-----TTTTDHYF 66
           SS+R CLC+PTTHPGSFRCS HR    +S K+    P  +  +SKAA     TT +    
Sbjct: 10  SSARTCLCSPTTHPGSFRCSFHRSFGKASTKS-AAAPHANRVESKAATMMMMTTASKACL 69

Query: 67  LKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSA 97
           +KAFLMQI+KPSSH LQRR NFQ KP+RFC + S+
Sbjct: 70  IKAFLMQIIKPSSHDLQRRRNFQRKPTRFCPLNSS 103

BLAST of MELO3C023447 vs. TAIR 10
Match: AT5G11090.1 (serine-rich protein-related )

HSP 1 Score: 68.6 bits (166), Expect = 3.5e-12
Identity = 38/115 (33.04%), Postives = 57/115 (49.57%), Query Frame = 0

Query: 2   PNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTT----- 61
           P+     SR C+C+PTTHPGSFRCSLH+  +N           PHG  + + TT      
Sbjct: 113 PSHNHKISRRCMCSPTTHPGSFRCSLHKNVAN-----------PHGQGTASYTTNGLNMR 172

Query: 62  -------------TDHYFLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPD 99
                         +  +++  L  +++PSSH L+RR  +QP+PSR   +  A +
Sbjct: 173 RSAMTNSLVRIGGVEGEWVRRALTTLIRPSSHHLKRRAAYQPRPSRLSIMAKADE 216

BLAST of MELO3C023447 vs. TAIR 10
Match: AT5G25280.1 (serine-rich protein-related )

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-11
Identity = 37/114 (32.46%), Postives = 57/114 (50.00%), Query Frame = 0

Query: 3   NKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTT------ 62
           +K   S R C+C+PTTHPGSFRCSLH+  +N           PHG  + + TT       
Sbjct: 117 HKIPDSRRRCMCSPTTHPGSFRCSLHKNVAN-----------PHGQGTASYTTNGLNMRR 176

Query: 63  ------------TDHYFLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPD 99
                        +  +++  L  +++PSSH L+RR  ++P+ SR  ++  A D
Sbjct: 177 SAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMSKAED 219

BLAST of MELO3C023447 vs. TAIR 10
Match: AT5G25280.2 (serine-rich protein-related )

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-11
Identity = 37/114 (32.46%), Postives = 57/114 (50.00%), Query Frame = 0

Query: 3   NKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTT------ 62
           +K   S R C+C+PTTHPGSFRCSLH+  +N           PHG  + + TT       
Sbjct: 117 HKIPDSRRRCMCSPTTHPGSFRCSLHKNVAN-----------PHGQGTASYTTNGLNMRR 176

Query: 63  ------------TDHYFLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPD 99
                        +  +++  L  +++PSSH L+RR  ++P+ SR  ++  A D
Sbjct: 177 SAMTNSLVRIGGVEGEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLASMSKAED 219

BLAST of MELO3C023447 vs. TAIR 10
Match: AT5G20370.1 (serine-rich protein-related )

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06
Identity = 34/105 (32.38%), Postives = 45/105 (42.86%), Query Frame = 0

Query: 8   SSRLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPH--------------------- 67
           + R CLC+PTTHPGSFRCS HRR  +   KT                             
Sbjct: 67  TKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLAL 126

Query: 68  -GSQSKAATTTTDHYFLKAFLMQIVKPSSHGLQRRGNFQPKPSRF 91
             S +K  +   +  F ++    + KPSS    RR  F+P+ SRF
Sbjct: 127 MNSLAKIGSVEAER-FRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

BLAST of MELO3C023447 vs. TAIR 10
Match: AT1G24577.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 18/38 (47.37%), Postives = 28/38 (73.68%), Query Frame = 0

Query: 1  MPNKTASSSRLCLCAPTTHPGSFRCSLHRRPSNSSHKT 39
          +  +T+ +  +C+C+PTTHPGSF+C LHR PS   +K+
Sbjct: 21 LSRQTSITKTICICSPTTHPGSFKCKLHRTPSLQRNKS 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008461151.12.2e-53100.00PREDICTED: uncharacterized protein LOC103499822 [Cucumis melo][more]
KAA0058731.11.9e-5299.04uncharacterized protein E6C27_scaffold339G002010 [Cucumis melo var. makuwa][more]
KGN45240.11.4e-4286.79hypothetical protein Csa_016736 [Cucumis sativus][more]
KAG6593379.11.2e-2569.52hypothetical protein SDJN03_12855, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7025727.13.4e-2570.83Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CEH61.1e-53100.00uncharacterized protein LOC103499822 OS=Cucumis melo OX=3656 GN=LOC103499822 PE=... [more]
A0A5A7UZ199.2e-5399.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0K6986.6e-4386.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G432210 PE=4 SV=1[more]
A0A6J1DD513.2e-2162.77uncharacterized protein LOC111019381 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A061G8R46.2e-1755.79Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_027325 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G11090.13.5e-1233.04serine-rich protein-related [more]
AT5G25280.11.0e-1132.46serine-rich protein-related [more]
AT5G25280.21.0e-1132.46serine-rich protein-related [more]
AT5G20370.11.7e-0632.38serine-rich protein-related [more]
AT1G24577.11.1e-0547.37unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..54
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 4..96
NoneNo IPR availablePANTHERPTHR33132:SF63SUBFAMILY NOT NAMEDcoord: 4..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023447.1MELO3C023447.1mRNA