MELO3C023423.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C023423.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	cucumber peeling cupredoxin-like
Location	chr01: 34281975 .. 34283071 (-)
RNA-Seq Expression	MELO3C023423.jh1
Synteny	MELO3C023423.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACAAAGTTGGATGTAGTCAAGAATTAATTCACAAATATTGGTGTGGGTTCAACTCTCCTTTCCCACCCATTGACCCTTATAAATGTATACACCAGCTTTCTTTCAACAAAATATTTTTGGTTTTTATTCATTTGAAAAATAAGAAAAATGGGTGGAGGAATTATTGGTTTAGTTTTGGGTTTAATTGCTGTGGTTTTGATTCACCAAGCCACCGCTCAGACGGTTCGTGTAGTCGGAGACTCCACCGGTTGGACGGTTCCGAAGGGCGGTGCTGCTTTCTATTCCGAGTGGGCTTCTAAATTCAACTTCTCCATTGGCGACTATCTAAGTATATATCAATCTTCTCTTCTCTCCTTTAATTTAAATTTCTAGTCTTTGGAATTATTAATCACAATCTTAAAGAGGTCTAGTTTCTAATTGATCGATTGTGTGGTTAAACTCAAGAAAATAAAATCTAATCTGTTTGATTTTAGTTTTTAGTTCTTTAGTTTTTCTTTTTTGGCAGCGTTTAACTTTGGGACGAACCTGCAGTGTCCAAGAAGTACCAAAAGGGTCGTTCGATGAATGCAATGGACACAATACCACACATTATGCCATCATTACAGGTCCTACAACAGTGAAGCTCGACACAGTCGGCATGCATTACTTCATTTGTACCTTTGACAATCACTGTTTGCAAGGTCAAAAGTTAGCTGTTAACGTCACAGTTACCGTCTCCAACAATACTCCAAACGATAATGCAATGTCACCTTCTTCAAACGCTGCTCAGCCACCCACAAGAACTCCCCCTGCTTCTCGTGGGGATGCATGCGCTCGAACTCCTGCTAATTCATTGTCTTCGTCACCACCTATTATTTGTGATGGATCTTCATCGACTTTGACGCCTTCCTCCTCTACCTTACTGATGGCAATACTTTATGTTACTTTGTATACAATTGTTATGAACACTTGTTTTAGATAGTATGGATTTACATCGGACCTTATTTTACTTATCTTTTTAGATTAATGAAAACATGTTTAGGAATTATTTTGAGATTGTCAATGGATGGTTTGACAACATCTTTTTATTTATTTATCTAAAAAAGTTAGTCTCCC

mRNA sequence

AGACAAAGTTGGATGTAGTCAAGAATTAATTCACAAATATTGGTGTGGGTTCAACTCTCCTTTCCCACCCATTGACCCTTATAAATGTATACACCAGCTTTCTTTCAACAAAATATTTTTGGTTTTTATTCATTTGAAAAATAAGAAAAATGGGTGGAGGAATTATTGGTTTAGTTTTGGGTTTAATTGCTGTGGTTTTGATTCACCAAGCCACCGCTCAGACGGTTCGTGTAGTCGGAGACTCCACCGGTTGGACGGTTCCGAAGGGCGGTGCTGCTTTCTATTCCGAGTGGGCTTCTAAATTCAACTTCTCCATTGGCGACTATCTAACGTTTAACTTTGGGACGAACCTGCAGTGTCCAAGAAGTACCAAAAGGGTCGTTCGATGAATGCAATGGACACAATACCACACATTATGCCATCATTACAGGTCCTACAACAGTGAAGCTCGACACAGTCGGCATGCATTACTTCATTTGTACCTTTGACAATCACTGTTTGCAAGGTCAAAAGTTAGCTGTTAACGTCACAGTTACCGTCTCCAACAATACTCCAAACGATAATGCAATGTCACCTTCTTCAAACGCTGCTCAGCCACCCACAAGAACTCCCCCTGCTTCTCGTGGGGATGCATGCGCTCGAACTCCTGCTAATTCATTGTCTTCGTCACCACCTATTATTTGTGATGGATCTTCATCGACTTTGACGCCTTCCTCCTCTACCTTACTGATGGCAATACTTTATGTTACTTTGTATACAATTGTTATGAACACTTGTTTTAGATAGTATGGATTTACATCGGACCTTATTTTACTTATCTTTTTAGATTAATGAAAACATGTTTAGGAATTATTTTGAGATTGTCAATGGATGGTTTGACAACATCTTTTTATTTATTTATCTAAAAAAGTTAGTCTCCC

Coding sequence (CDS)

ATGCATTACTTCATTTGTACCTTTGACAATCACTGTTTGCAAGGTCAAAAGTTAGCTGTTAACGTCACAGTTACCGTCTCCAACAATACTCCAAACGATAATGCAATGTCACCTTCTTCAAACGCTGCTCAGCCACCCACAAGAACTCCCCCTGCTTCTCGTGGGGATGCATGCGCTCGAACTCCTGCTAATTCATTGTCTTCGTCACCACCTATTATTTGTGATGGATCTTCATCGACTTTGACGCCTTCCTCCTCTACCTTACTGATGGCAATACTTTATGTTACTTTGTATACAATTGTTATGAACACTTGTTTTAGATAG

Protein sequence

MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACARTPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVMNTCFR

Homology

[Close]

BLAST of MELO3C023423.jh1 vs. NCBI nr
Match: XP_008461122.1 (PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo])

HSP 1 Score: 201 bits (512), Expect = 2.06e-63
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 60
           MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR
Sbjct: 111 MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 170

Query: 61  TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVMNTCFR 107
           TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVMNTCFR
Sbjct: 171 TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVMNTCFR 217

[Close]

BLAST of MELO3C023423.jh1 vs. NCBI nr
Match: TYK10544.1 (cucumber peeling cupredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 3.86e-52
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 60
           MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR
Sbjct: 106 MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 165

Query: 61  TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILY 94
           TPANSLSSSPPIICDGSSS LTPSSSTLLMAILY
Sbjct: 166 TPANSLSSSPPIICDGSSSALTPSSSTLLMAILY 199

[Close]

BLAST of MELO3C023423.jh1 vs. NCBI nr
Match: KAA0058749.1 (cucumber peeling cupredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (445), Expect = 2.18e-50
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 60
           MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR
Sbjct: 106 MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 165

Query: 61  TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILY 94
           TPANSLSSSPPIICDGSSS LTPSSSTLLMAILY
Sbjct: 166 TPANSLSSSPPIICDGSSSALTPSSSTLLMAILY 199

[Close]

BLAST of MELO3C023423.jh1 vs. NCBI nr
Match: XP_011659524.1 (cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45267.1 hypothetical protein Csa_016430 [Cucumis sativus])

HSP 1 Score: 141 bits (356), Expect = 6.71e-40
Identity = 84/103 (81.55%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPP-TRTPPASRGDACA 60
           MHYFICT  NHC +GQKLAVNVTVTV    P DNAMSPSSNAAQPP TRTPPAS GDAC+
Sbjct: 106 MHYFICTVGNHCFEGQKLAVNVTVTVV--PPTDNAMSPSSNAAQPPPTRTPPASHGDACS 165

Query: 61  RTPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVM 102
            TPANSLSSSPPI CDGSSS LTPSSSTLLMA LYVTLY  V+
Sbjct: 166 STPANSLSSSPPI-CDGSSSALTPSSSTLLMATLYVTLYAFVL 205

[Close]

BLAST of MELO3C023423.jh1 vs. NCBI nr
Match: XP_038899076.1 (cucumber peeling cupredoxin-like [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 1.22e-19
Identity = 65/106 (61.32%), Postives = 75/106 (70.75%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 60
           +HYFICT D+HC+QGQKL+V  TVTVS +TP   AM PSSN AQPP         DACAR
Sbjct: 105 VHYFICTIDSHCVQGQKLSV--TVTVSTSTPGG-AMPPSSNIAQPPPHI------DACAR 164

Query: 61  TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVMNTCF 106
           TPA  LS S P+ CDGSS  LT +SST+LMAI YVTL  IV++  F
Sbjct: 165 TPAI-LSFSSPLNCDGSSVALT-ASSTVLMAIHYVTLSAIVISLLF 199

[Close]

BLAST of MELO3C023423.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CEF8 (cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103499804 PE=4 SV=1)

HSP 1 Score: 201 bits (512), Expect = 9.96e-64
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 60
           MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR
Sbjct: 111 MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 170

Query: 61  TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVMNTCFR 107
           TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVMNTCFR
Sbjct: 171 TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVMNTCFR 217

[Close]

BLAST of MELO3C023423.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CH70 (Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001970 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 1.87e-52
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 60
           MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR
Sbjct: 106 MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 165

Query: 61  TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILY 94
           TPANSLSSSPPIICDGSSS LTPSSSTLLMAILY
Sbjct: 166 TPANSLSSSPPIICDGSSSALTPSSSTLLMAILY 199

[Close]

BLAST of MELO3C023423.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UZ00 (Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold339G002210 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 1.05e-50
Identity = 93/94 (98.94%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 60
           MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR
Sbjct: 106 MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 165

Query: 61  TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILY 94
           TPANSLSSSPPIICDGSSS LTPSSSTLLMAILY
Sbjct: 166 TPANSLSSSPPIICDGSSSALTPSSSTLLMAILY 199

[Close]

BLAST of MELO3C023423.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KA53 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432490 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 3.25e-40
Identity = 84/103 (81.55%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPP-TRTPPASRGDACA 60
           MHYFICT  NHC +GQKLAVNVTVTV    P DNAMSPSSNAAQPP TRTPPAS GDAC+
Sbjct: 106 MHYFICTVGNHCFEGQKLAVNVTVTVV--PPTDNAMSPSSNAAQPPPTRTPPASHGDACS 165

Query: 61  RTPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVM 102
            TPANSLSSSPPI CDGSSS LTPSSSTLLMA LYVTLY  V+
Sbjct: 166 STPANSLSSSPPI-CDGSSSALTPSSSTLLMATLYVTLYAFVL 205

[Close]

BLAST of MELO3C023423.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KBU0 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432480 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 9.56e-13
Identity = 56/106 (52.83%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 1   MHYFICTFDNHCLQGQKLAVNVTVTVSNNTPNDNAMSPSSNAAQPPTRTPPASRGDACAR 60
           MHYFICT   HCL GQKL+V  TV+ S  T     M PSSN   P          DACA 
Sbjct: 105 MHYFICTVGTHCLGGQKLSV--TVSASGGT-----MPPSSNTPHP--------HNDACAP 164

Query: 61  TPANSLSSSPPIICDGSSSTLTPSSSTLLMAILYVTLYTIVMNTCF 106
           TPA    SSPPI    S S LTPSSST LM  LYVTL  I+M+  F
Sbjct: 165 TPA----SSPPIRGGLSPSALTPSSSTALMTTLYVTLSAIIMSLLF 191

The following BLAST results are available for this feature:

BLAST of MELO3C023423.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008461122.1	2.06e-63	100.00	PREDICTED: cucumber peeling cupredoxin-like [Cucumis melo]	[more]
TYK10544.1	3.86e-52	98.94	cucumber peeling cupredoxin-like [Cucumis melo var. makuwa]	[more]
KAA0058749.1	2.18e-50	98.94	cucumber peeling cupredoxin-like [Cucumis melo var. makuwa]	[more]
XP_011659524.1	6.71e-40	81.55	cucumber peeling cupredoxin-like [Cucumis sativus] >KGN45267.1 hypothetical prot...	[more]
XP_038899076.1	1.22e-19	61.32	cucumber peeling cupredoxin-like [Benincasa hispida]	[more]

BLAST of MELO3C023423.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C023423.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CEF8	9.96e-64	100.00	cucumber peeling cupredoxin-like OS=Cucumis melo OX=3656 GN=LOC103499804 PE=4 SV...	[more]
A0A5D3CH70	1.87e-52	98.94	Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7UZ00	1.05e-50	98.94	Cucumber peeling cupredoxin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0KA53	3.25e-40	81.55	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432490...	[more]
A0A0A0KBU0	9.56e-13	52.83	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G432480...	[more]

BLAST of MELO3C023423.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 1..29 e-value: 8.7E-6 score: 27.8
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..48
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 1..24 score: 14.152958

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023423.jh1.t1	MELO3C023423.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0009055	electron transfer activity