MELO3C023362 (gene) Melon (DHL92) v4

Overview


Name	MELO3C023362
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	thionin-like protein 2
Location	chr01: 34082302 .. 34083230 (-)
RNA-Seq Expression	MELO3C023362
Synteny	MELO3C023362

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAACACACAACAAATAAAGTTAAAAGGCTTTTTCATTTAGATTCCCGTCATCATCAATCATCAATAAACATCAATATATCATGGAGAGCAGCAACATGGCAATGAAATCTTCTTTAATTGCATGGCTATTCCTGAGCTTGCTCTCCATAGCCCATTCATATACCTCTTTTCAAGACTGTTATGGCACCTGCGTCGTCACATGCGCCGTCACGCCCGGCATTCCTATCTCCGAATGCCCCAAGAGATGCTTCAAAACTTGCTGGTCTAAGACCGCCAATATCGTCGGCGGGACACAGCTGGGAAATAATCAATTCTCTTGCGTGTTCGACTGCGCAATTCCCTCGTGTACCAAGTTTAGCACAAAGGAAGATCCAGGTTCGAAATTTACACTACTTCGATCGCTTTCTTTTTTAGTTGCTAATGAAACGTACTGGGAGACAAAGTTGAAGAGGGATTGTGTTAAAAATAATTAATATCTGGAAGATTAAGTTTTTTTTTTTGTTGATCATACACAATATTTGAAGTTAATTCATAATTAGTTGTATTTGTTTCTTTGTTGATGCATGCAGCTGCAGAAAAAGTGGGGAGGTGTGTGGATTCTTGCTCTCACGGATGTATCAAGATTTGATGATGTGTGGATATCCTAAATGGAAGCCAATTAACTATTTTTTATGTATAATTTGTAAGAAATGTATTGTGTTTTATTATTAATGAAACATCATTCATTATTCTTGGAATCCAATTTCTTTCTATGCTAAAGATCATAAATTAGGTTTAATCATTGGACAGAAAATTTAGGTTATGTTTGAATTGTCCATGTAGTATTTTTTAACGATATATTTTTTTAAAGAAAAAAAAAACTCTCTTTTATAAAATAATATGTTTAAATTAAAGAAAAATTTTCATAAATATAATAAGAAAGCCCACA

mRNA sequence

AGAACACACAACAAATAAAGTTAAAAGGCTTTTTCATTTAGATTCCCGTCATCATCAATCATCAATAAACATCAATATATCATGGAGAGCAGCAACATGGCAATGAAATCTTCTTTAATTGCATGGCTATTCCTGAGCTTGCTCTCCATAGCCCATTCATATACCTCTTTTCAAGACTGTTATGGCACCTGCGTCGTCACATGCGCCGTCACGCCCGGCATTCCTATCTCCGAATGCCCCAAGAGATGCTTCAAAACTTGCTGGTCTAAGACCGCCAATATCGTCGGCGGGACACAGCTGGGAAATAATCAATTCTCTTGCGTGTTCGACTGCGCAATTCCCTCGTGTACCAAGTTTAGCACAAAGGAAGATCCAGCTGCAGAAAAAGTGGGGAGGTGTGTGGATTCTTGCTCTCACGGATGTATCAAGATTTGATGATGTGTGGATATCCTAAATGGAAGCCAATTAACTATTTTTTATGTATAATTTGTAAGAAATGTATTGTGTTTTATTATTAATGAAACATCATTCATTATTCTTGGAATCCAATTTCTTTCTATGCTAAAGATCATAAATTAGGTTTAATCATTGGACAGAAAATTTAGGTTATGTTTGAATTGTCCATGTAGTATTTTTTAACGATATATTTTTTTAAAGAAAAAAAAAACTCTCTTTTATAAAATAATATGTTTAAATTAAAGAAAAATTTTCATAAATATAATAAGAAAGCCCACA

Coding sequence (CDS)

ATGGAGAGCAGCAACATGGCAATGAAATCTTCTTTAATTGCATGGCTATTCCTGAGCTTGCTCTCCATAGCCCATTCATATACCTCTTTTCAAGACTGTTATGGCACCTGCGTCGTCACATGCGCCGTCACGCCCGGCATTCCTATCTCCGAATGCCCCAAGAGATGCTTCAAAACTTGCTGGTCTAAGACCGCCAATATCGTCGGCGGGACACAGCTGGGAAATAATCAATTCTCTTGCGTGTTCGACTGCGCAATTCCCTCGTGTACCAAGTTTAGCACAAAGGAAGATCCAGCTGCAGAAAAAGTGGGGAGGTGTGTGGATTCTTGCTCTCACGGATGTATCAAGATTTGA

Protein sequence

MESSNMAMKSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTCWSKTANIVGGTQLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGCIKI

Homology

[Close]

BLAST of MELO3C023362 vs. NCBI nr
Match: XP_038899383.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-23
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 0


Query: 6   MAMKSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTCWSKTA 65
           MA K +LIAWL LS LS A+S TSFQ+CY TC V CA+TPG+  S+CP RC + C   + 
Sbjct: 1   MAKKWALIAWLLLSSLSTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSF 60

Query: 66  NIVGGT--QLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGC 115
            I      +   NQF C   CA+ SCTKFSTK++PA ++VG CVDSCS  C
Sbjct: 61  PIDNNDVHRQEQNQFFCKLGCAVSSCTKFSTKQNPAEKEVGNCVDSCSQTC 110

[Close]

BLAST of MELO3C023362 vs. NCBI nr
Match: XP_011659556.1 (thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_016713 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-22
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 6   MAMKSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTCWSKTA 65
           +A K +L+AWL L+ LS A+S TSFQ+CY TC V CA+TPG+  S+CP RC + C   + 
Sbjct: 5   LAKKWALMAWLLLTSLSTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSF 64

Query: 66  NI----VGGTQLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGC 115
            I    V   Q   N F C   CA  SCTKFSTK++P   KVGRCVDSCS  C
Sbjct: 65  PIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTC 116

[Close]

BLAST of MELO3C023362 vs. NCBI nr
Match: XP_008461039.1 (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-21
Identity = 58/113 (51.33%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 6   MAMKSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTCWSKTA 65
           +A K +L+AWL L+ LS A+S TSFQ+CY TC V CA+TPG+  S+CP RC + C   + 
Sbjct: 5   LAKKWALMAWLLLTSLSTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSF 64

Query: 66  NI----VGGTQLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGC 115
            I    V   Q   N F C   CA  SCTKFSTK++P   KV RCVDSCS  C
Sbjct: 65  PIDDDDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTC 116

[Close]

BLAST of MELO3C023362 vs. NCBI nr
Match: KGN45342.1 (hypothetical protein Csa_016718 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 4.3e-21
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MESSNMAMKSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTC 60
          MESSNM MK +L AWLFLSLLS+A+SYTSFQDCYGTCVVTCAVTPGIP+SEC KRCFKTC
Sbjct: 1  MESSNMGMKCALTAWLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECLKRCFKTC 60

[Close]

BLAST of MELO3C023362 vs. NCBI nr
Match: XP_022953260.1 (thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 110.9 bits (276), Expect = 7.4e-21
Identity = 56/112 (50.00%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 9   KSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTCWSKTANIV 68
           K  L+AWL LS L+ A+S TSFQ+CY TC V CA+TPG+  S+CP RC + C   +  I 
Sbjct: 7   KLGLMAWLVLSSLTTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIH 66

Query: 69  GGT------QLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGC 115
                    +   NQF C   CA  SCTKFST ++PA +KVG CVDSCS  C
Sbjct: 67  NAAADDDVHRQQKNQFFCELGCAASSCTKFSTHQNPAEKKVGSCVDSCSRTC 117

[Close]

BLAST of MELO3C023362 vs. ExPASy Swiss-Prot
Match: A8MRP4 (Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.8e-09
Identity = 29/89 (32.58%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 30  FQDCYGTCVVTCAVTPGIP-ISECPKRCFKTCWSK-TANIVGGTQLGNNQFSCVFDCAIP 89
           F++CY  C+V C      P   +CP  C K C  + +   V    +  + + C   CA  
Sbjct: 25  FKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPSVSSNNIDESDYFCKLGCATY 84

Query: 90  SCTKFSTKEDPAAEKVGRCVDSCSHGCIK 117
            C   S+ ++P  E+V  CVDSCS+ C K
Sbjct: 85  HCVSLSSIQNPNVERVSACVDSCSNKCTK 113

[Close]

BLAST of MELO3C023362 vs. ExPASy TrEMBL
Match: A0A0A0K781 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 6   MAMKSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTCWSKTA 65
           +A K +L+AWL L+ LS A+S TSFQ+CY TC V CA+TPG+  S+CP RC + C   + 
Sbjct: 5   LAKKWALMAWLLLTSLSTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSF 64

Query: 66  NI----VGGTQLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGC 115
            I    V   Q   N F C   CA  SCTKFSTK++P   KVGRCVDSCS  C
Sbjct: 65  PIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTC 116

[Close]

BLAST of MELO3C023362 vs. ExPASy TrEMBL
Match: A0A1S3CDU4 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 9.4e-22
Identity = 58/113 (51.33%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 6   MAMKSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTCWSKTA 65
           +A K +L+AWL L+ LS A+S TSFQ+CY TC V CA+TPG+  S+CP RC + C   + 
Sbjct: 5   LAKKWALMAWLLLTSLSTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSF 64

Query: 66  NI----VGGTQLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGC 115
            I    V   Q   N F C   CA  SCTKFSTK++P   KV RCVDSCS  C
Sbjct: 65  PIDDDDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTC 116

[Close]

BLAST of MELO3C023362 vs. ExPASy TrEMBL
Match: A0A0A0KAC5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441620 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-21
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 1  MESSNMAMKSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTC 60
          MESSNM MK +L AWLFLSLLS+A+SYTSFQDCYGTCVVTCAVTPGIP+SEC KRCFKTC
Sbjct: 1  MESSNMGMKCALTAWLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECLKRCFKTC 60

[Close]

BLAST of MELO3C023362 vs. ExPASy TrEMBL
Match: A0A6J1GMH5 (thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.6e-21
Identity = 56/112 (50.00%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 9   KSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTCWSKTANIV 68
           K  L+AWL LS L+ A+S TSFQ+CY TC V CA+TPG+  S+CP RC + C   +  I 
Sbjct: 7   KLGLMAWLVLSSLTTANS-TSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIH 66

Query: 69  GGT------QLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGC 115
                    +   NQF C   CA  SCTKFST ++PA +KVG CVDSCS  C
Sbjct: 67  NAAADDDVHRQQKNQFFCELGCAASSCTKFSTHQNPAEKKVGSCVDSCSRTC 117

[Close]

BLAST of MELO3C023362 vs. ExPASy TrEMBL
Match: A0A6J1JZ84 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-21
Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 9   KSSLIAWLFLSLLSIAHSYTSFQDCYGTCVVTCAVTPGIPISECPKRCFKTCWSKTANIV 68
           K  L+AWL LS L+ A+S TSFQ+CY TC + CA+TPG+  S+CP RC + C   +  I 
Sbjct: 7   KLGLMAWLVLSSLTTANS-TSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIH 66

Query: 69  GGT-----QLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGC 115
                   +   NQF C   CA  SCTKFST+++PA +KVG CVDSCS  C
Sbjct: 67  NAAADDVHRQQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTC 116

[Close]

BLAST of MELO3C023362 vs. TAIR 10
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. )

HSP 1 Score: 61.2 bits (147), Expect = 6.3e-10
Identity = 29/89 (32.58%), Postives = 43/89 (48.31%), Query Frame = 0


Query: 30  FQDCYGTCVVTCAVTPGIP-ISECPKRCFKTCWSK-TANIVGGTQLGNNQFSCVFDCAIP 89
           F++CY  C+V C      P   +CP  C K C  + +   V    +  + + C   CA  
Sbjct: 25  FKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPSVSSNNIDESDYFCKLGCATY 84

Query: 90  SCTKFSTKEDPAAEKVGRCVDSCSHGCIK 117
            C   S+ ++P  E+V  CVDSCS+ C K
Sbjct: 85  HCVSLSSIQNPNVERVSACVDSCSNKCTK 113

[Close]

BLAST of MELO3C023362 vs. TAIR 10
Match: AT1G12672.2 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 20/60 (33.33%), Postives = 32/60 (53.33%), Query Frame = 0


Query: 56  CFKTCWSKTANIVGGT-QLGNNQFSCVFDCAIPSCTKFSTKEDPAAEKVGRCVDSCSHGC 115
           C KTC    ++ +  T ++ +N + C   C+   C   S+ ++P  +KV  CVDSCS  C
Sbjct: 41  CIKTCLEPPSSQMDSTNEINHNDYYCKLGCSTHHCASLSSIQNPNVDKVVDCVDSCSDKC 100

The following BLAST results are available for this feature:

BLAST of MELO3C023362 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899383.1	1.6e-23	54.05	thionin-like protein 2 [Benincasa hispida]	[more]
XP_011659556.1	2.3e-22	52.21	thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_01...	[more]
XP_008461039.1	1.9e-21	51.33	PREDICTED: thionin-like protein 2 [Cucumis melo]	[more]
KGN45342.1	4.3e-21	86.67	hypothetical protein Csa_016718 [Cucumis sativus]	[more]
XP_022953260.1	7.4e-21	50.00	thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein...	[more]

BLAST of MELO3C023362 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8MRP4	8.8e-09	32.58	Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1	[more]

BLAST of MELO3C023362 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K781	1.1e-22	52.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1	[more]
A0A1S3CDU4	9.4e-22	51.33	thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1	[more]
A0A0A0KAC5	2.1e-21	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441620 PE=4 SV=1	[more]
A0A6J1GMH5	3.6e-21	50.00	thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1	[more]
A0A6J1JZ84	4.7e-21	49.55	thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1	[more]

BLAST of MELO3C023362 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G12663.1	6.3e-10	32.58	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant t...	[more]
AT1G12672.2	1.6e-05	33.33	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038975	Thionin-like protein	PANTHER	PTHR36312	THIONIN-LIKE PROTEIN 1	coord: 6..116
None	No IPR available	PANTHER	PTHR36312:SF1	THIONIN-LIKE PROTEIN 1	coord: 6..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023362.1	MELO3C023362.1	mRNA