MELO3C023261.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C023261.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Ribosome assembly factor mrt4
Location	chr11: 688418 .. 693268 (-)
RNA-Seq Expression	MELO3C023261.jh1
Synteny	MELO3C023261.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGATTTCTTTCTTCTCCCTTCTCCCTCTCCATCGCCCCCATTTTCGCTTGCCAGTTCACCTCTATACTCAATTTTCTTTCGCTTCCTCTTATATCTCTCTCTACTGTTGCAAAACCCCATCTCAAGGTCTGTATCAACTATCAAGGTTTTTTTCTTTAGCAGCAATACAAGATGCCCAAGTCGAAGCGTGATAGACCAGGTACGTTTTAATTCCTCTTGGACTTATATGTGCATTGTTTCCTGCTGCAAGAAGTTGAATCCGTTTCGTTATTTTGTGTGTTTTTTTTTTGTTGGTTTGTTCTATCTTTCTTGTTTTCGATGCTTAGAGAAGTAGGTTTTAGCTCACCTGGTTAGAGGAGAGGTTAGTTTAATATGTTAGGGGAAGTTGTCACTGCAAAAGTTGTATTTGAAAGATGGGTTTTTGTGTGTGTGTGTGTGTTTGCTATATGAGGGGAAGTTCATTCTGAAGTGCTTAGTTCACTAGGTTGGCTGCAAATGCACCGGCATTTGTGGTGTTACATTATGTAATAGGACCTGAATGTAAAAATATATGAATACCCTTAGCATGCACACAACTAAGTATATCTTTTTGATTGCTATTTTCATGAGACACCTCTGATGAAATTTGTTTCTTGTTAAAAATAGATAGCTTTTTTTCCTTCATTTTACTCTGTGGCAATGATAAGTTTTCTAGTTTCTAAGTTTCTGACCAAATTTTTTTACACCCAAGAAGATATTTGGTATTTCTTAGGCTAGGTTTGGTTTAGGCTTGGGATGGTCTTGACATCTTATCATCACTTATGGAGAAATATTCCACTAGTTGCTTCTTTCTGACAAGGTTACTATAGTCGATATTTCTTCATGTTTATATCAACTTTCCTTGTAATTAAGATTTACAAACTAGTTTTTCTCTTTCTTGCTTAAGCTTTGTATTGTTCATCTAAGGCCTTTCAAAGTTCTATTGACTATATTTGATGTGTTTCTTGTGCAAATACTTTAAGAGTGAGGAATTTGTAGAGGCATCCTGATAAGGAGTAGCAAGTAGGTCATTTGCTATCCACTTCTTGAACTAATACTTATTACAAATATGACATTTTGTGAGCGTCAAGCTTGCTTCCCTTGATGGTAGGAGAGGCTTTAGTGTGCTCTAGAAGATAGTTTATGTTATCAAATATGAGGGAAGAATAATTTTACTTTTTAGTATAGGTGTTGCCAGGAGGTGGGTGAGTTGAAAGTTTCTATCTATGTGCAAAATATAGAGTTGCTTACAACACATGGGACATGTCTAAAGTTATAGTGTTTGTTTCCTGTGATTAATTTCTAAAAAAATATACTTAGTAGGCTGGTTAATGTTGTTAAACAGAAACCAAATAGCAGTGAACCTAGGAGAACTTGATGACTTGCTTTAGCTGTAGGAAGATGCTAAAATTTTGTTCTTTTCATTCAAGGTTCTTGTTGATTATGGGTTAAAGAGTTAGTTATATTATGGGTTAATTTGTATGAGGCAGTTTCTTGTGAAAAGTATGAGGCAGTTGAAGAAGTTAAATGACTTGTGGTGGTAGTATTCAGTGTCAAACTCGTGTGGTTTTTAACTTGAAAAGAAAGAGGAAAAATATGAGACTTAGTCCGATGCAGATTAGTGTTTTGAGTCTTTTAACTAATTGTTAGTGGGATAAATGCAGTTACTTTATCAAAAACAAAGAAGAAAGGAAGGGACCACAAGAAATCAATGGTGGAATCGATCAGGCAGGCTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAATTCAAGGAACTCAAGGAGCAGCTGAAGTCAACTAGCAGGCGAGTTGTACTCCCTGACTTCTTTATTATTAATTTGCTTCATCATTTCAAATATTGATTAGTGATACGAATGTACTTCCTCTATGTTGTTTGGTTAGCTTCTCGATTGCACAAGAAAAGATATAAATAATAAATAGCACATTTTAAAACTCAAAAGAAAAAATCATAATGTATGCATGCCTTAGGAGAAAGGATGAGAACACGTTGTTGCCATAACAACTGAAAACAACAATTTTAGCAGGTTATGGTAACAGCAATTGTTTCCATGCTTACACAGCAACCTTTCTCTCCTTGCTTTAAAAAGCTTCACTTAAAAAGGGGTTTACAACCTTTGGCTGCTGCATGTGTACCTATGTCTTAACATATCCTCTGTTCTTTTTCTTCTTGAAGGCATCAATGATTTGGAAATTATATTACTTGACTTTGAAACATATTTTAGCTATACATTATGTATCATGCTTCTGATACTCGTTCACATTTTTAAAGTGTATAAATGTTTAATGAGGCTAACTGGTTGAAAATCAGGATATTCTGTTTGTGAACTCATTTATTGCAATTTTTGAACTGCTGCTGGCTGAGTGGCATTTTGAGATGTCATGCATGGCCTCTCTCATTTTTTCTAATGAATTGATGTGACCTGACCTGACCAGACAGTTTTAAGTGGGTTTCCAAATTGACTTTTTTTCCGCCCAATGATAGATTGTTTTTTGGAGCAAACAAAGTTATGCAAGTTTCTCTTGGGCGAAGTGCTTCTGATGAGATTCGGCCAGGCCTTCACAAGGTTTCTAAGGTGAATCTCTTTTTCCAAAGTGCATATACTTCAAGTGTTCTTTCTCTGTAGTCTTTAGGAAGTAACATTCACTCTTCTATTTTCAGCTTTTGCATGGAAATACTGGACTTTGCTTCACAAACTTACCAAAAGAAGAGGTTGAGAGGTAAATAAGCATGCACTGTTTAAAAATCGACAAGCTCTGCCATAAAGTTTAATTTTGACAAGTTGCTATTTCATTTTAAATTTAGATACCTTGGTATTTAGATTTCATGAATTATGCATTCTGTTTTTGTTTAGCAGTTGAAGGATCAGATAAATTGTGCTCAATAAATTTCCATATCTATGAATACAAAAGTGTGAAATTTTCATTTGAGAAAGACACCTTAAAAATGAGAATTTTGGCCCCCAAAAAAATCCCAACTTTGTATCACATGGTTAGCATTTCAATTCTGTGGGAAGGGACTTCTAGAATAAATTGCTTAGAGGAAAATGCTCGTGTATTTGTTATGTTTTACGATAATGCTTGATTTAATTTTTAATGTTTTGTTATACAGGTTATTTAACGAGTATGAGGATTATGATTATGCAAGGACTGGAAGCGCAGCCTCAGAAAAGGTTTGTGGAACACATGACATTTATCGAGTATTCTTTTTAATAAATCTGATTTTTTTTTACTTTGGTCTTTTCATGACCTTAATATTGTTCTTGTATTTTGAATATGATGAGGGTGCTATGGGGTGTCAACCTAGTTGAGATGTCCGAGTGCTCCTACTGATCCTCTCTCTCTCTCTTTTTCCCATTTCTAGGCTTCTTTATTATTTTCGATGTATGTCTTGTACTTTGAGTTTATTAATAATAGAGAAGTTTGTCTCCTTTTCAAAAAACAAAAAAAACTGATTTTTTTAAGGTGTTGATTCAACAAAAAGGTCCGGTATGATTTTATATAATCTGTGTTATAATATGCATGTACTTGGTGGTTGGATGCTTTATTGAAGTTTAATGCTATTAGGTTGAGCTTAAGGAAGGTCCCCTGGAGCAGTTTAGCCATGAGATGGAACCTTCTCTACGGAAGCTTGGGTTGCCTGTTCGTTTGAATAAGGGTCCGTAAATATACACTTCGTGCCTGCAAGCATTACTTATTTTAAAAAGTTGGTTATAAAGCAGAATTCTTTGTGGAACAGGTGTGGTGGAGCTTGTATCAGACTTCGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGGTTTGTATCTCTTTGCGACTTTGCTCTTTTCTTAAATCTATGTTGACTTTGACATGTGAATGAGGCTCTGTAAGGTTGTTCCAGCAGTGGCGTTTTTCACTTCCAACTCCCATCTCAAATTAAGTGTGGTTTGAAGATGTTTTTGGAATAAGTTCTTTGAGGGAAACAATTTCTATGCACACTTTTTTAATTATAGGCTCTTTTATGTTGCCATTGAGAGAACTGAGCGTCTATAAAAAAAGAACAGGTGGTTCTTTTTTTGGCATCGAACAAATTGTCAGGTTCCTTCGGTTTTTGTTCTCTAAGTTTGATTTTTTTATCTAGCAATTTGAAGTTTCGAAGAGAGAACTTCTATTTGGTTCTTCTTTACTGTTTACAACCTTACTTGAGTTATGCATATGTATGTTCTAAAATTTGTAGGCGAGAGCTATATCAATTGACAGTTGGAATTTGAGGCTAAGAGAGAGATTGTACTTTGGCATCGATGTTCGCATGACGATTAAGATGTTTGATTTGATTTGATTTGGTTGCAGCGTGCACTAGGGCTAAGGATGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGCCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAAATCTCAACGCAAAGGAATCCAAATTATGATAATATATATGAATGCAATGCCAATGCAATGAATGGCTGTCCCTAGGATTCATTGCCATAATATATATATATATATATATATATGATTAGGATTCCTTCCTCTTTTTTATTTTGGTTTGTTTTTACAAGTTTTTGTAGAAATTACAAGTGCACCCCAGTCACTTAATGTGTTGTTTAGTTCAACAACTCACAAAGAAATTCTCAATTTTGTTGTGTTTAGTGAGATGGACAATTGGGTATTGTGATTTGGTAGATTTTTTCAATAGTAATATTAATCCACTCGTTGAGCTT

mRNA sequence

ATTTGATTTCTTTCTTCTCCCTTCTCCCTCTCCATCGCCCCCATTTTCGCTTGCCAGTTCACCTCTATACTCAATTTTCTTTCGCTTCCTCTTATATCTCTCTCTACTGTTGCAAAACCCCATCTCAAGGTCTGTATCAACTATCAAGGTTTTTTTCTTTAGCAGCAATACAAGATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACAAAGAAGAAAGGAAGGGACCACAAGAAATCAATGGTGGAATCGATCAGGCAGGCTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAATTCAAGGAACTCAAGGAGCAGCTGAAGTCAACTAGCAGGCGAGTTATTGTTTTTTGGAGCAAACAAAGTTATGCAAGTTTCTCTTGGGCGAAGTGCTTCTGATGAGATTCGGCCAGGCCTTCACAAGGTTTCTAAGCTTTTGCATGGAAATACTGGACTTTGCTTCACAAACTTACCAAAAGAAGAGGTTGAGAGGTTATTTAACGAGTATGAGGATTATGATTATGCAAGGACTGGAAGCGCAGCCTCAGAAAAGGTTGAGCTTAAGGAAGGTCCCCTGGAGCAGTTTAGCCATGAGATGGAACCTTCTCTACGGAAGCTTGGGTTGCCTGTTCGTTTGAATAAGGGTGTGGTGGAGCTTGTATCAGACTTCGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGCGTGCACTAGGGCTAAGGATGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGCCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAAATCTCAACGCAAAGGAATCCAAATTATGATAATATATATGAATGCAATGCCAATGCAATGAATGGCTGTCCCTAGGATTCATTGCCATAATATATATATATATATATATATATGATTAGGATTCCTTCCTCTTTTTTATTTTGGTTTGTTTTTACAAGTTTTTGTAGAAATTACAAGTGCACCCCAGTCACTTAATGTGTTGTTTAGTTCAACAACTCACAAAGAAATTCTCAATTTTGTTGTGTTTAGTGAGATGGACAATTGGGTATTGTGATTTGGTAGATTTTTTCAATAGTAATATTAATCCACTCGTTGAGCTT

Coding sequence (CDS)

ATGCAAGTTTCTCTTGGGCGAAGTGCTTCTGATGAGATTCGGCCAGGCCTTCACAAGGTTTCTAAGCTTTTGCATGGAAATACTGGACTTTGCTTCACAAACTTACCAAAAGAAGAGGTTGAGAGGTTATTTAACGAGTATGAGGATTATGATTATGCAAGGACTGGAAGCGCAGCCTCAGAAAAGGTTGAGCTTAAGGAAGGTCCCCTGGAGCAGTTTAGCCATGAGATGGAACCTTCTCTACGGAAGCTTGGGTTGCCTGTTCGTTTGAATAAGGGTGTGGTGGAGCTTGTATCAGACTTCGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGCGTGCACTAGGGCTAAGGATGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGCCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAA

Protein sequence

MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA

Homology

[Close]

BLAST of MELO3C023261.jh1 vs. NCBI nr
Match: KAA0040776.1 (mRNA turnover protein 4-like protein [Cucumis melo var. makuwa] >TYK02092.1 mRNA turnover protein 4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 316 bits (809), Expect = 1.13e-108
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS
Sbjct: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA
Sbjct: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156

[Close]

BLAST of MELO3C023261.jh1 vs. NCBI nr
Match: XP_011649395.1 (mRNA turnover protein 4 homolog [Cucumis sativus] >KAE8651976.1 hypothetical protein Csa_005993 [Cucumis sativus])

HSP 1 Score: 308 bits (789), Expect = 1.60e-104
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQ+SLGRS SDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS
Sbjct: 74  MQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 133

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA
Sbjct: 134 EKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 193

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LGLR AIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 194 LGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 229

[Close]

BLAST of MELO3C023261.jh1 vs. NCBI nr
Match: XP_038902849.1 (mRNA turnover protein 4 homolog [Benincasa hispida])

HSP 1 Score: 304 bits (779), Expect = 5.32e-103
Identity = 149/156 (95.51%), Postives = 154/156 (98.72%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQVSLGRSAS+EIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY DYDYARTGSAA+
Sbjct: 74  MQVSLGRSASNEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSAAT 133

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA
Sbjct: 134 EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 193

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LG+RMA FRL+LVCRWSPGDFELYIDGP+NSDVESA
Sbjct: 194 LGIRMATFRLHLVCRWSPGDFELYIDGPDNSDVESA 229

[Close]

BLAST of MELO3C023261.jh1 vs. NCBI nr
Match: XP_022157470.1 (mRNA turnover protein 4 homolog [Momordica charantia])

HSP 1 Score: 297 bits (761), Expect = 2.93e-100
Identity = 143/156 (91.67%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQVSLGR+ SDEIRPGLHK+SKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGS A+
Sbjct: 74  MQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSTAT 133

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSDFVVCEEGK+LSPESAGILRA
Sbjct: 134 EKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEGKALSPESAGILRA 193

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LG+RMA FRLNLVCRWSPGDF+LYI+G +NSDVESA
Sbjct: 194 LGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]

BLAST of MELO3C023261.jh1 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 296 bits (759), Expect = 5.92e-100
Identity = 143/156 (91.67%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQVSLGR+ASDEI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY DYDYARTGS A+
Sbjct: 74  MQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEAT 133

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLSPESAGILRA
Sbjct: 134 EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRA 193

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LG+RMA FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 194 LGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.6e-36
Identity = 79/157 (50.32%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           M V+LGRS SDE +  LH+VSK L G  GL FTN  KEEV+  F +Y + DYAR G+ A+
Sbjct: 73  MMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKYTEMDYARAGNKAT 132

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
             V L  GPLEQF H MEP LR+LGLP  L KGVV L+SD+ VC+EG  L+PE A +L+ 
Sbjct: 133 FTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLTPEQARVLKL 192

Query: 121 LGLRMAIFRLNLVCRW--SPGDFELYIDGPENSDVES 156
            G  MA F++++   W    G F+   D    S  ES
Sbjct: 193 FGYEMAEFKVSIKYMWDAQSGRFQQMGDDLPESAPES 229

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 4.3e-35
Identity = 78/157 (49.68%), Postives = 97/157 (61.78%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           M V+LGRS SDE +  LH+VSK L G  GL FTN  KEEV   F +Y + DYAR G+ A+
Sbjct: 73  MMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKYTEMDYARAGNKAA 132

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
             V L  GPLEQF H MEP LR+LGLP  L +GVV L+SD+ VC+EG  L+PE A +L+ 
Sbjct: 133 FTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEGDVLTPEQARVLKL 192

Query: 121 LGLRMAIFRLNLVCRW--SPGDFELYIDGPENSDVES 156
            G  MA F++ +   W    G F+   D    S  ES
Sbjct: 193 FGYEMAEFKVTIKYMWDSQSGRFQQMGDDLPESASES 229

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.1e-34
Identity = 78/157 (49.68%), Postives = 97/157 (61.78%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           M V+LGRS SDE +  LH+VSK L G  GL FTN  KEEV   F +Y + D+AR G+ A+
Sbjct: 73  MMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKYTEMDFARAGNKAT 132

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
             V L  GPL+QF H MEP LR+LGLP  L KGVV L+SD+ VC+EG  L+PE A IL+ 
Sbjct: 133 LTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEGDVLTPEQARILKL 192

Query: 121 LGLRMAIFRLNLVCRW--SPGDFELYIDGPENSDVES 156
            G  MA F++ +   W    G F+   D    S  ES
Sbjct: 193 FGYEMAEFKVIIKYMWDAQSGRFQQMDDDLPESAPES 229

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy Swiss-Prot
Match: Q86HD3 (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-25
Identity = 52/143 (36.36%), Postives = 87/143 (60.84%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           + V LG+S  DE++P LHK+++ L G  GL FTN PK++V   F  Y + D+ R+G  + 
Sbjct: 73  LSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNYSEKDFPRSGFVSE 132

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           E + +KEGP+   +H ME  LR LGLP  L  GV+ +  ++ +CE G +++PE + +L+ 
Sbjct: 133 ETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAGVAVTPEQSQLLKL 192

Query: 121 LGLRMAIFRLNLVCRWSPGDFEL 144
               ++ F+ ++   W+  +F L
Sbjct: 193 FNHEISEFKFHIKGFWNEDEFTL 215

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy Swiss-Prot
Match: Q7S302 (Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.3e-19
Identity = 53/158 (33.54%), Postives = 80/158 (50.63%), Query Frame = 0


Query: 4   SLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKV 63
           +LG +  D    GL K+SK L G+ GL FTN    E++  F      D+AR GS A+  +
Sbjct: 76  ALGTTPEDAQADGLDKLSKYLSGSVGLIFTNRDPSEIKDYFVNLTQVDFARAGSVATRTI 135

Query: 64  ELKEGPLEQ------------FSHEMEPSLRKLGLPVRLNKGVVEL------VSDFVVCE 123
            +  GPL               SH +EP LR+LG+P R+ KG V L        D+V+C+
Sbjct: 136 TIPSGPLYSTGGEVPAEHDVPVSHTLEPELRRLGMPTRMVKGKVCLGDEAGEGDDYVICK 195

Query: 124 EGKSLSPESAGILRALGLRMAIFRLNLVCRWSPGDFEL 144
           EG++L      +L+   + ++ FR+ L+  WS    E+
Sbjct: 196 EGETLDSRQTRLLKLFSICLSEFRVKLLAYWSAASGEV 233

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TFH5 (Ribosome assembly factor mrt4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00790 PE=3 SV=1)

HSP 1 Score: 316 bits (809), Expect = 5.49e-109
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS
Sbjct: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA
Sbjct: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LM77 (Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV=1)

HSP 1 Score: 308 bits (789), Expect = 3.61e-105
Identity = 152/156 (97.44%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQ+SLGRS SDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS
Sbjct: 52  MQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 111

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA
Sbjct: 112 EKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 171

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LGLR AIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 172 LGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 207

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1)

HSP 1 Score: 297 bits (761), Expect = 1.42e-100
Identity = 143/156 (91.67%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQVSLGR+ SDEIRPGLHK+SKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGS A+
Sbjct: 74  MQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSTAT 133

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSDFVVCEEGK+LSPESAGILRA
Sbjct: 134 EKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEGKALSPESAGILRA 193

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LG+RMA FRLNLVCRWSPGDF+LYI+G +NSDVESA
Sbjct: 194 LGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1)

HSP 1 Score: 296 bits (759), Expect = 2.86e-100
Identity = 143/156 (91.67%), Postives = 152/156 (97.44%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQVSLGR+ASDEI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY DYDYARTGS A+
Sbjct: 74  MQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEAT 133

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLSPESAGILRA
Sbjct: 134 EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRA 193

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LG+RMA FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 194 LGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of MELO3C023261.jh1 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1)

HSP 1 Score: 293 bits (751), Expect = 4.74e-99
Identity = 142/156 (91.03%), Postives = 151/156 (96.79%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQVSLGR+ASDEI+PGL+KVSKLLHGNTGLCFTNLPKEEVERLFNEY DYDYARTGS A+
Sbjct: 74  MQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEYVDYDYARTGSEAT 133

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEGKSLSPESAGILRA
Sbjct: 134 EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEGKSLSPESAGILRA 193

Query: 121 LGLRMAIFRLNLVCRWSPGDFELYIDGPENSDVESA 156
           LG+RMA FRLNLVCRWSPG+FELYIDGP+ SD+E+A
Sbjct: 194 LGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]

BLAST of MELO3C023261.jh1 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-58
Identity = 107/144 (74.31%), Postives = 124/144 (86.11%), Query Frame = 0


Query: 1   MQVSLGRSASDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAAS 60
           MQV+LGRSA DE+R G++KVSKLL G+TGL  T++PKEEVE LFN YED D++RTGS A 
Sbjct: 74  MQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAV 133

Query: 61  EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRA 120
           E VELKEGPLEQF+HEMEP LRKL +PVRLNKG VELV+DFVVCEEGK LSP+SA ILR 
Sbjct: 134 ETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRL 193

Query: 121 LGLRMAIFRLNLVCRWSPGDFELY 145
           L ++MA F+LNL+CRWSP DFELY
Sbjct: 194 LRMKMATFKLNLLCRWSPSDFELY 217

[Close]

BLAST of MELO3C023261.jh1 vs. TAIR 10
Match: AT3G09200.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 32/106 (30.19%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 23  LLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPS-- 82
           LL GN GL FT    +EV     +Y+    AR G  A   V ++ G     +  ++PS  
Sbjct: 83  LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPG-----NTGLDPSQT 142

Query: 83  --LRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLR 125
              + L +P ++NKG VE+++   + ++G  +    A +L  LG+R
Sbjct: 143 SFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR 183

[Close]

BLAST of MELO3C023261.jh1 vs. TAIR 10
Match: AT3G11250.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 32/106 (30.19%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 23  LLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPS-- 82
           LL GN GL FT    +EV     +Y+    AR G  A   V ++ G     +  ++PS  
Sbjct: 83  LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPG-----NTGLDPSQT 142

Query: 83  --LRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLR 125
              + L +P ++NKG VE+++   + ++G  +    A +L  LG+R
Sbjct: 143 SFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR 183

[Close]

BLAST of MELO3C023261.jh1 vs. TAIR 10
Match: AT3G09200.2 (Ribosomal protein L10 family protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 32/106 (30.19%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 23  LLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPS-- 82
           LL GN GL FT    +EV     +Y+    AR G  A   V ++ G     +  ++PS  
Sbjct: 50  LLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPG-----NTGLDPSQT 109

Query: 83  --LRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLR 125
              + L +P ++NKG VE+++   + ++G  +    A +L  LG+R
Sbjct: 110 SFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR 150

The following BLAST results are available for this feature:

BLAST of MELO3C023261.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040776.1	1.13e-108	100.00	mRNA turnover protein 4-like protein [Cucumis melo var. makuwa] >TYK02092.1 mRNA...	[more]
XP_011649395.1	1.60e-104	97.44	mRNA turnover protein 4 homolog [Cucumis sativus] >KAE8651976.1 hypothetical pro...	[more]
XP_038902849.1	5.32e-103	95.51	mRNA turnover protein 4 homolog [Benincasa hispida]	[more]
XP_022157470.1	2.93e-100	91.67	mRNA turnover protein 4 homolog [Momordica charantia]	[more]
XP_022933518.1	5.92e-100	91.67	mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover...	[more]

BLAST of MELO3C023261.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FV84	8.6e-36	50.32	mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1	[more]
Q9UKD2	4.3e-35	49.68	mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2	[more]
Q9D0I8	2.1e-34	49.68	mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1	[more]
Q86HD3	1.4e-25	36.36	Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 ...	[more]
Q7S302	7.3e-19	33.54	Ribosome assembly factor mrt4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	[more]

BLAST of MELO3C023261.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFH5	5.49e-109	100.00	Ribosome assembly factor mrt4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0A0LM77	3.61e-105	97.44	Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV...	[more]
A0A6J1DT71	1.42e-100	91.67	Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=...	[more]
A0A6J1F4Z2	2.86e-100	91.67	Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3...	[more]
A0A6J1I1E2	4.74e-99	91.03	Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 S...	[more]

BLAST of MELO3C023261.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25260.1	2.2e-58	74.31	Ribosomal protein L10 family protein	[more]
AT3G09200.1	2.5e-06	30.19	Ribosomal protein L10 family protein	[more]
AT3G11250.1	2.5e-06	30.19	Ribosomal protein L10 family protein	[more]
AT3G09200.2	2.5e-06	30.19	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 2..56 e-value: 3.3E-7 score: 32.3
IPR043164	50S ribosomal protein L10, insertion domain superfamily	GENE3D	3.90.105.20		coord: 57..125 e-value: 5.1E-24 score: 85.9
IPR040637	60S ribosomal protein L10P, insertion domain	PFAM	PF17777	RL10P_insert	coord: 53..122 e-value: 2.2E-22 score: 78.9
None	No IPR available	PANTHER	PTHR45841:SF4	RIBOSOME ASSEMBLY FACTOR MRT4	coord: 1..155
None	No IPR available	PANTHER	PTHR45841	MRNA TURNOVER PROTEIN 4 MRTO4	coord: 1..155
IPR033867	Ribosome assembly factor Mrt4	CDD	cd05796	Ribosomal_P0_like	coord: 1..111 e-value: 1.02952E-60 score: 183.163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023261.jh1.t1	MELO3C023261.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly