MELO3C023238 (gene) Melon (DHL92) v4

Overview


Name	MELO3C023238
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	GDP-mannose transporter, putative
Location	chr11: 458231 .. 464800 (-)
RNA-Seq Expression	MELO3C023238
Synteny	MELO3C023238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAGGGAGAAGGAACAGTTTAGCTTTAAGGATTCTGTTTCTCAAAGTCATTCGAACTCCTCTTGCAATGGAGACCTCGCATAATCCAAACGCAAACACCAATTCCAATCCTAATACCATAACGTCGCCAATTCCTGTGTTATGGCCGACCATTGATGGCTCTCTGGGTTTGTCGGAGGAAGAATCGGTGAGCTATGCCCGTAGGTTCTACAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTCGCTCCCGCTCGTTTCCTCGCATCCGACCCTGTGAGTTTTAACTTCTACTTTAAATTATTTCATAAATTTACACTTATACCTGATCTTTAAACCACGATAAACTTGAAATTTTCATACTTATTGCTGTTCGAAGAAAAATATGATTCGGATCCAGATCCTGTTGTTGGGTTTATCATACCTCAGTATTCATGAGCATCAACGATTATTCTTTGTTGTTGTTCTGTTTTTTTCGTTATATTTTAACTCCATTCTGCTTCACTAGTTATGTTTTAATGTGTGGAAGGCCAAAACTCAAATTATTTTGTACAGAAATACATGATGCTATTGTAATGTTGATATTTGTGTTAAAAAAACTGACGCCCATCGGTTAATCCTTGTTCATTTGTTGTTTTTTTCGTAGGCTTGGTATCTAGGTACTAGGCGTGTTTATTTGTGCAAATATCCTACCTTTCTAGTTATTCCTTCTTTTTGTTGTTTGCTTCATCGTGGCGACTACATTATTCTTTTGAGTTTGATAGCTTTTATAATAATACGTTAAGCGATGATACCTTGGTACTCCTCACAATTTGATGAATAAAATGGATAAAAGATTCGTAATCATGTTCAAATTCATTAAATTGAGCCTTAAGACTTTGTTGTTCTTTTCCTCAGGCTTGGTCTGTAGATACTAGGAGTTCTAACCTGATTATTTGTGCAAATACCCTGACTGTTTTATTCTACAAAGCATATACATATATATATTGGGTGCATCAAATGGGGATCGGAGGAACTTGAACCTTTGACCCCAAGTAAGGTAGCACACTGTAATTACTACTAACCTAGGCTCACTTTAATCAAAGTACTAATGCTTTTGAAGGAAGATAAAAATTATTGGCTCTTACGCTTCAAGTAGACAACATTTGCCAATAAGCTTTCGGTTGTGTGTTGAAGTTCTAATTCAATTGAGCTTTCCTATGCATATCCCATTACCTAGGACACCCAAGTATGCAGCAATCTGAAGTTTTGGCCTTAGATTATTTGTCATGGTGGTCTTTCAACTTCATTTGGCATATCCTCTTTTTGGGAATTATGCATATGAACTTTGTTATGCATCTATCTTATCCACCTAGAGCTGTGTGTACACGTATATATGTACAAATTTAATCATAAACCAACTAGGCAAATTAGGATGGCTATGCATACAAGAAGGGTGGGTCTTGTGTGTTTCCATGCATATGGATGAGAAACCCTCAAAAGGGGACAATCCATGGTTGTTTACTATACATTGAATGCATTATCTCTGTCTTCACATATCTCCTTTGTCGTACGAGCACTGGTTGTTTGTAGTGGAGATACTCTCCAAAACCCTAGGTTCAAGCCCATGGAAAATAAGAGTGGCTTGTTTTTGTGAGTGTGTGTTGTATGTAATTTAGCTAATAAGGGTGGCCTACCTTGGAGCGTATGCCTATATATCCATGGATTTAATTCAAAATTGACTAGGGGAGAAAAGTTTGGTTGTGTGTGTAGCAAGGTTGGTTTTTTTATACGTGTATTAGGGGTCATTAAACTTAAAGTTATTATGTGCTTGTTCTTACTTTCAGTTTAAATGATCCAATTCAACTTTCAATTTTTTATTTTTATTTTTATGTCTGTACATCCATGCTACACAGAACCTGCTAGTGATAATTATTAAGGAGAATTGTTTTATAGTGTGATTTATAGTTCACTGTAACAATGACTATTATAATTTTAATACAACAATGAGTTTGTTTGAGATCAATACTCTATATGCTTGAAAGCTTTTCAGACGGTCACTCTGATGCTGGAGTTTTCAAGATCAATAACTTTGGAGGATACTCCTTTTTCAAGACCATTTATCATTGGTAACACAGATAGAATTCTATATTTATTTTCAACAAATCGTAGAAGTTCCACATGTCTTAGAAAGATGAGTTGTTTCTTTGGGTTTGTTTACTATGAAAAGTTTGAGATGAAGTCCAGGATTTTGTATCATCTCTCTCTGAATGGGTGTCCTAGGTAATTGCAATAGTTGAAACTTTTAGGATGAGATCGCAGCCATAGGACGACGATCCACTGAACTTTAGCATGAGGAGATGGTACCGAGGACTCCCTCGTTCAAATTCTAATAATAGGTGTTACAACTTCCGAAGGAAGTCGGTCAACATATTTTCAGTCATTACTTATCGGTCTTTAATCAAGAGTACCGAAGAATTAATGAGGGTATAACTAGGCCTAGGAGTGAAATTGAGAACTTGGGAGTTTCCTGTTTTCCTAGCTTTTGTAGATGGTGTTCCTTACATAAAGATATTTACGATTGATTCTCATCTTTTATTCAAATAACTTGGTAGTCTTTTCATTTTTTGTGATCTCCTTGATTTTTTCTGGGAGAGGGTCAGATATCTTGTCGTTCTACAAAGTTCCCATAACTTTAGGCTATCATAATTTTTCTCTAGAAATTTTGGGTATGTATCTCTGTTTATAGTTATTCCTAGAACCACGTTATGGTAGAGTATTCATTTCTATTTAATAGACATTTACTTGAACTGTTTGACTGTTTTTCACATTAACTACTTTTAGGCTCAGTACAATTACCTAACGATTTGAAATTATCGTTTCTTTAGATATTGTTTAATGATTGGAAATTGTTGTTTTTGTTTAACAATTTGAAATTGTTGTTTCTTTAGATATTGTTGGCTCAGCTATCGGCTTTGGTGTTTCCATGGCCATTATCTCGTCTTGGGCATTGACATTTTCCATCGGAGGAGAACGCCTGTTTGGACCTGTTTGGGATAAACTAGTGATGTACAATCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCCTCTCTTCGGCAACCAACTTCAACCTTCTTGTATATATCAAAATCTGTAACTCTCTACTGTCATTGTTTTCTTGAAAGATCAAAGTTGAAGCTTTTGGTTTCCCTTCTTCAAGTGTTCCAATTGTCGAACATGAACCTTTGCATTACCCATGTTGATTCTTGTTAATAGTTGATTCACAAGTTTGAATCGGGTCTCCCTTCAACGGCGGACTAAGATTTGTGGATAAAATTCTAAACCGGTTCTCTTGAATTCTTCTTTGCTTTCTTTTTGTCCCACTTTCAATACTATAAGCCGTGCTCTTTTCTGGTTCCCCTACATCAAAACATCCATTTTGAAGGTTGAAAACATCTTGAAGCAAGTTAGAAACTCCCTTAAAATTCTTAAGGGACAGTGTACAGTGATCAACAATCCCCAAAAGAAAGGTATGATTGTATACTGTTACACTTCTTGTTATGGATATATTAGGATAACTAGTATGGTTGGTAAAAGGGTATTTTAGTAAATAGTTAGGTTTTTTTTATAGAACTTTTAGTTGTAAACAAGAGGGAGTGTGGTTGAGAGAATTTTTTTGTGGGATTTTCTTTCCAGAGGGCTATTAGGGAGAGAGTAGCTCTCTTGAAAGGCTAGATTATCTTGTTACTTTTCCTACTTTTCCTATTGATATTATAACAAATTTTCATATATTTCTATGATAGTGTTCTTTGTTGGTTTAGTTGTTCTTGAGTATTCTTGTTAAGGAGTATCTTATAAAATACCTCTACGATGGGACAATTAGGAGAATATGTGTATATATAGTTCTTAAGAATATTATTGTATTCCCAATTTGAGACATGTGCCATAGTTTGATTCATGCTATCAGATATCATTGAAACAAGTTTGTTTTCAAATGCTAGTTTTGGATAATTGCCTCCATCAGATTAAGCTGGGATTCACTTAATTAACTTCGGTTAGTAGAAATACTAATCTCTTGACATTTTTGTGGTGTCATCAATATCCAAATGGGAAAGCTAATCCCTAAAATAGAATAAGATGGAACCAAAAAACTTGACAGAAATAGGGAAGGATGGTGGATGGGTAGGGTTGGTGGGGGATTTGATTCTTGAATGATGTTTGCTTGGTTAGGTTTTCTTTATTACTATTCTTCTTTTCAATCTGGTTTTTCAATCTCAGCACATAGGATTTAGGTCGAGTTTTGAAAGTAAAGGATCTGTTACCTCCATAGAGCACCAAACTAATTTTTTTTTTCTTCTTAATCAATCATTATTTGAACAACAAAATCATTGTGTTACTGTGAGGTTAGTTTTGTTATTGACTTTTTCAATTAAAAGAAAATAGTGTTAGACGTTTGCCACATAATGATAATGATGATTTCTAATTTTAATCACATTAGATATGAATGGATATTAACAGTTGGCACATAGGGTTTTGCCTAGTTCAAAATCGATAGTCATTGCTGAATTTAGAAAAGAAAAATGTTCAATGTTGATAATAAATAAAATGATTTGGTTAATTTCTGAATCTTTTCTCTTGTGGATTAAGTTATTGGATATGGAAAAAAAGTGCTTTTTTATAAATGTGGAAAGATGAGGATTGCTGAATCAGTCCGTACAAAACCAACTTCTATCATTAAAATGATTCTGATTCTGAGTGATTTTGTCAAGGGAGCAGTAGGTTATATATATATATATATATATCTTTTATTTTGTTAAAGGAAAACAATTATATCGGAGAAAACACTATACGTTGAAATTGTTATTTTTATCTCTCTATATTAAACTTATTGCATAGGGAGAAATCTCTATATCATTTTCAGGATGCTAAGGATATTGACCAAGATTTGAAATTTGATTGGCTCATTATTTATCAACTAATTCCCTTGTGATTTGAATGCATTTAATCAAATTCTATTGTTTCTGATTATTTATTTATTTTTGGTTTGCGTAAAATCTAAGATTTAAAAAGAAAAGTAAAAGATAAGAAGAGTTATCAAATGAATAAGACATACATACATACATATATATATATATATATATCACAGATTTGATTGAATATAATTTGTGGGTACTTTGGATAATTACTTATTTTTATCTTGTTGTGTAACAAAAACTTCTCAACAAAACCAAAAAGTTGTTGTTGTTATTATTATTTATTATTATTTATTATTATTAATTAAAGGAAATAATTGAAAAGAACAAAACAAAAAAAGAATTCCTTTTGATGGCATATGACAAACTGTGTAACTGCACAGCCAGAAATGTATTAAGAGGGAATTTGGATTGTTTCTCAAAATCTCTAATGAACCAACAAATCAATTGCCTTTCCCCTGCACAGGTTGGTGAGATCACAATAACAAATAAAAATTTAACTGTCCACAATTAAGACATACCCCATTTTGTTATTTCTGATGTAATAAGTTGTTCTGTTTTGGCACTAACTTCACTAAATTAAGCTTCCAAATTTCATTATGCTGATTAAGCTATAGGTGGGGCTTCTCTTTGGGTTTTGTGCACTTTATTGCCAGCTTCAAATGGAAACATATACACACGTATATATGGTTGAAATGATAAGTTTAGCATGTGGTTCGATAGAAAGTTAGAGTTTAGTTTCGGTCATGGTCTTAAAAATACGATTTTAGTTTATATGATTTGATAAAGCCTTCATAAATCCTTTTATAATAGACTATTCATGAAAATTTTATCAAATCATATAGATTAAATTATAACTTTCTCTGAATTATAAGTATGATATTCATAATTTAACCTATATTTATCTTTAGAAAATAGGTTACGTTGATACTAAAATGCTACCAAAAATTCTCACATCATGACCTTCATGGGTTTTAAATGATAAATATAATTTGTAATTTTGGAGAAGAGATTACCAAGAACAAGGTGTTTTGGGATGACGAGTTGCACATGTGTTATATTTGTCGTAAATACTTTGATACTAATTAATTAGTTTAGAGCAGCAGAGGGGGCAAGCTTTTAATTCACGAGGAAAGAAGATGAAATTATTACTTTGTGTCAAACTATGATATGTATTTATAAGAACAGATAAGCCTAGGATTTCCCTAATCTCTTTTTATGAACTTTTTTCAAGAAGGCAAGGGCACAATGAGGTCAACTTGGAGGGAGAGTGTGACTCGAGCCAGCTCTTCGAGGGTGTAGATCAACCTCAACCTCAGAGAAGGCGGACCTTAGTCTCGAAGGTCGAGGCCGAGAGGTGGGCAATTGGATTGAATGACCAAGTTGCTTTCCATGGGTTCTCTTGGATTTTGTAAGGGTTTTTCGGACCCGTCTCTTGAAAATATTTTGAATCTTTCTTTTGAACACATTTCGAATTTGCGGAGAATTTGATTATCAATGTTATTTTTCTCTAGGTTCAAAAAATTACGGAAAACACGTGTTAAATTATAAATTAATACCTCAAATTTC

mRNA sequence

AGAAAAAGGGAGAAGGAACAGTTTAGCTTTAAGGATTCTGTTTCTCAAAGTCATTCGAACTCCTCTTGCAATGGAGACCTCGCATAATCCAAACGCAAACACCAATTCCAATCCTAATACCATAACGTCGCCAATTCCTGTGTTATGGCCGACCATTGATGGCTCTCTGGGTTTGTCGGAGGAAGAATCGGTGAGCTATGCCCGTAGGTTCTACAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTCGCTCCCGCTCGTTTCCTCGCATCCGACCCTCTTTTCAGACGGTCACTCTGATGCTGGAGTTTTCAAGATCAATAACTTTGGAGGATACTCCTTTTTCAAGACCATTTATCATTGATATTGTTGGCTCAGCTATCGGCTTTGGTGTTTCCATGGCCATTATCTCGTCTTGGGCATTGACATTTTCCATCGGAGGAGAACGCCTGTTTGGACCTGTTTGGGATAAACTAGTGATGTACAATCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCCTCTCTTCGGCAACCAACTTCAACCTTCTTGTATATATCAAAATCTGTAACTCTCTACTGTCATTGTTTTCTTGAAAGATCAAAGTTGAAGCTTTTGGTTTCCCTTCTTCAAGTGTTCCAATTGTCGAACATGAACCTTTGCATTACCCATGTTGATTCTTGTTAATAGTTGATTCACAAGTTTGAATCGGGTCTCCCTTCAACGGCGGACTAAGATTTGTGGATAAAATTCTAAACCGGTTCTCTTGAATTCTTCTTTGCTTTCTTTTTGTCCCACTTTCAATACTATAAGCCGTGCTCTTTTCTGGTTCCCCTACATCAAAACATCCATTTTGAAGGTTGAAAACATCTTGAAGCAAGTTAGAAACTCCCTTAAAATTCTTAAGGGACAGTGTACAGTGATCAACAATCCCCAAAAGAAAGGCAAGGGCACAATGAGGTCAACTTGGAGGGAGAGTGTGACTCGAGCCAGCTCTTCGAGGGTGTAGATCAACCTCAACCTCAGAGAAGGCGGACCTTAGTCTCGAAGGTCGAGGCCGAGAGGTGGGCAATTGGATTGAATGACCAAGTTGCTTTCCATGGGTTCTCTTGGATTTTGTAAGGGTTTTTCGGACCCGTCTCTTGAAAATATTTTGAATCTTTCTTTTGAACACATTTCGAATTTGCGGAGAATTTGATTATCAATGTTATTTTTCTCTAGGTTCAAAAAATTACGGAAAACACGTGTTAAATTATAAATTAATACCTCAAATTTC

Coding sequence (CDS)

ATGGAGACCTCGCATAATCCAAACGCAAACACCAATTCCAATCCTAATACCATAACGTCGCCAATTCCTGTGTTATGGCCGACCATTGATGGCTCTCTGGGTTTGTCGGAGGAAGAATCGGTGAGCTATGCCCGTAGGTTCTACAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTCGCTCCCGCTCGTTTCCTCGCATCCGACCCTCTTTTCAGACGGTCACTCTGATGCTGGAGTTTTCAAGATCAATAACTTTGGAGGATACTCCTTTTTCAAGACCATTTATCATTGATATTGTTGGCTCAGCTATCGGCTTTGGTGTTTCCATGGCCATTATCTCGTCTTGGGCATTGACATTTTCCATCGGAGGAGAACGCCTGTTTGGACCTGTTTGGGATAAACTAGTGATGTACAATCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAG

Protein sequence

METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS

Homology

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BLAST of MELO3C023238 vs. NCBI nr
Match: XP_008460893.1 (PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo])

HSP 1 Score: 330.1 bits (845), Expect = 1.1e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120
           VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 161

[Close]

BLAST of MELO3C023238 vs. NCBI nr
Match: KAA0040759.1 (putative gamma-secretase subunit PEN-2 [Cucumis melo var. makuwa] >TYK02074.1 putative gamma-secretase subunit PEN-2 [Cucumis melo var. makuwa])

HSP 1 Score: 259.2 bits (661), Expect = 2.3e-65
Identity = 132/161 (81.99%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120
           VNCFYFWPVLRSRSFPRIRP                             IVGSAIGFGVS
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIGFGVS 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 133

[Close]

BLAST of MELO3C023238 vs. NCBI nr
Match: XP_011649406.1 (probable gamma-secretase subunit PEN-2 [Cucumis sativus] >KGN62163.1 hypothetical protein Csa_006741 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 3.5e-61
Identity = 126/161 (78.26%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           MET  NPNANTNSNPNTI+SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120
           VNCFYFWPVLRSRSFPRIRP                             IVGSAIGFGV 
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIGFGVF 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADK+GLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKVGLTGWS 133

[Close]

BLAST of MELO3C023238 vs. NCBI nr
Match: XP_038900346.1 (probable gamma-secretase subunit PEN-2 [Benincasa hispida])

HSP 1 Score: 232.6 bits (592), Expect = 2.3e-57
Identity = 122/167 (73.05%), Postives = 126/167 (75.45%), Query Frame = 0


Query: 1   METSHNPNANTNSNP------NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFAL 60
           ME+S NPN NTNSNP      N ++SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFAL
Sbjct: 16  MESSQNPNTNTNSNPNPNRIQNPVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFAL 75

Query: 61  LPFLWAVNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSA 120
           LPFLWAVNCFYFWPVLRSRSFPRIRP                             IVGSA
Sbjct: 76  LPFLWAVNCFYFWPVLRSRSFPRIRPY----------------------------IVGSA 135

Query: 121 IGFGVSMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           IGFGV MAIISSWALTFSIGGERLFG VWDKLVMYNLAD+LGLTGWS
Sbjct: 136 IGFGVFMAIISSWALTFSIGGERLFGTVWDKLVMYNLADRLGLTGWS 154

[Close]

BLAST of MELO3C023238 vs. NCBI nr
Match: XP_022971629.1 (probable gamma-secretase subunit PEN-2 [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55
Identity = 119/165 (72.12%), Postives = 123/165 (74.55%), Query Frame = 0


Query: 1   METSHNPNANTNSNP----NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME S N N+N N NP    N ++SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLP
Sbjct: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIG 120
           FLWAVNCFYFWPVLRSRSFPRIRP                             IVGSAIG
Sbjct: 61  FLWAVNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIG 120

Query: 121 FGVSMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           F V MAIISSWALTF+IGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 FAVFMAIISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS 137

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BLAST of MELO3C023238 vs. ExPASy Swiss-Prot
Match: Q9FY84 (Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana OX=3702 GN=At5g09310 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.4e-41
Identity = 93/158 (58.86%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 4   SHNPNANTNSNP-NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVN 63
           + NPN N N NP +TI S   V WPTIDG LGL+EE SV YARRFYKFGFALLP+LW VN
Sbjct: 16  NRNPNPNPNPNPLSTIISSAQV-WPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWFVN 75

Query: 64  CFYFWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSM 123
           CFYFWPVLR SR+FP+IR                              +V SAIGF V  
Sbjct: 76  CFYFWPVLRHSRAFPQIRNY----------------------------VVRSAIGFSVFT 135

Query: 124 AIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTG 160
           A++S+WALTFSIGGE+LFGP++DKLVMYN+AD+LGL+G
Sbjct: 136 ALLSAWALTFSIGGEQLFGPLYDKLVMYNVADRLGLSG 144

[Close]

BLAST of MELO3C023238 vs. ExPASy TrEMBL
Match: A0A1S3CDI1 (probable gamma-secretase subunit PEN-2 OS=Cucumis melo OX=3656 GN=LOC103499635 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.2e-87
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120
           VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 161

[Close]

BLAST of MELO3C023238 vs. ExPASy TrEMBL
Match: A0A5A7THJ9 (Putative gamma-secretase subunit PEN-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00610 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 132/161 (81.99%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120
           VNCFYFWPVLRSRSFPRIRP                             IVGSAIGFGVS
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIGFGVS 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 133

[Close]

BLAST of MELO3C023238 vs. ExPASy TrEMBL
Match: A0A0A0LK38 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302290 PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.7e-61
Identity = 126/161 (78.26%), Postives = 128/161 (79.50%), Query Frame = 0


Query: 1   METSHNPNANTNSNPNTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60
           MET  NPNANTNSNPNTI+SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA
Sbjct: 1   METLQNPNANTNSNPNTISSPIRVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWA 60

Query: 61  VNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVS 120
           VNCFYFWPVLRSRSFPRIRP                             IVGSAIGFGV 
Sbjct: 61  VNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIGFGVF 120

Query: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           MAIISSWALTFSIGGERLFGPVWDKLVMYNLADK+GLTGWS
Sbjct: 121 MAIISSWALTFSIGGERLFGPVWDKLVMYNLADKVGLTGWS 133

[Close]

BLAST of MELO3C023238 vs. ExPASy TrEMBL
Match: A0A6J1I943 (probable gamma-secretase subunit PEN-2 OS=Cucurbita maxima OX=3661 GN=LOC111470312 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.2e-56
Identity = 119/165 (72.12%), Postives = 123/165 (74.55%), Query Frame = 0


Query: 1   METSHNPNANTNSNP----NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME S N N+N N NP    N ++SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLP
Sbjct: 1   MENSQNSNSNLNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIG 120
           FLWAVNCFYFWPVLRSRSFPRIRP                             IVGSAIG
Sbjct: 61  FLWAVNCFYFWPVLRSRSFPRIRPY----------------------------IVGSAIG 120

Query: 121 FGVSMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           F V MAIISSWALTF+IGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 FAVFMAIISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS 137

[Close]

BLAST of MELO3C023238 vs. ExPASy TrEMBL
Match: A0A6J1F097 (probable gamma-secretase subunit PEN-2 OS=Cucurbita moschata OX=3662 GN=LOC111438306 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 2.3e-55
Identity = 118/165 (71.52%), Postives = 122/165 (73.94%), Query Frame = 0


Query: 1   METSHNPNANTNSNP----NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60
           ME S N N+N N NP    N ++SPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLP
Sbjct: 1   MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLP 60

Query: 61  FLWAVNCFYFWPVLRSRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIG 120
           FLWAVNCFYFWPVLRS SFPRIRP                             IVGSAIG
Sbjct: 61  FLWAVNCFYFWPVLRSHSFPRIRPY----------------------------IVGSAIG 120

Query: 121 FGVSMAIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTGWS 162
           F V MAIISSWALTF+IGGERLFGPVWDKLVMYNLADKLGLTGWS
Sbjct: 121 FAVFMAIISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS 137

[Close]

BLAST of MELO3C023238 vs. TAIR 10
Match: AT5G09310.1 (CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )

HSP 1 Score: 168.7 bits (426), Expect = 3.8e-42
Identity = 93/158 (58.86%), Postives = 109/158 (68.99%), Query Frame = 0


Query: 4   SHNPNANTNSNP-NTITSPIPVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVN 63
           + NPN N N NP +TI S   V WPTIDG LGL+EE SV YARRFYKFGFALLP+LW VN
Sbjct: 16  NRNPNPNPNPNPLSTIISSAQV-WPTIDGPLGLTEEASVDYARRFYKFGFALLPWLWFVN 75

Query: 64  CFYFWPVLR-SRSFPRIRPSFQTVTLMLEFSRSITLEDTPFSRPFIIDIVGSAIGFGVSM 123
           CFYFWPVLR SR+FP+IR                              +V SAIGF V  
Sbjct: 76  CFYFWPVLRHSRAFPQIRNY----------------------------VVRSAIGFSVFT 135

Query: 124 AIISSWALTFSIGGERLFGPVWDKLVMYNLADKLGLTG 160
           A++S+WALTFSIGGE+LFGP++DKLVMYN+AD+LGL+G
Sbjct: 136 ALLSAWALTFSIGGEQLFGPLYDKLVMYNVADRLGLSG 144

The following BLAST results are available for this feature:

BLAST of MELO3C023238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460893.1	1.1e-86	100.00	PREDICTED: probable gamma-secretase subunit PEN-2 [Cucumis melo]	[more]
KAA0040759.1	2.3e-65	81.99	putative gamma-secretase subunit PEN-2 [Cucumis melo var. makuwa] >TYK02074.1 pu...	[more]
XP_011649406.1	3.5e-61	78.26	probable gamma-secretase subunit PEN-2 [Cucumis sativus] >KGN62163.1 hypothetica...	[more]
XP_038900346.1	2.3e-57	73.05	probable gamma-secretase subunit PEN-2 [Benincasa hispida]	[more]
XP_022971629.1	1.3e-55	72.12	probable gamma-secretase subunit PEN-2 [Cucurbita maxima]	[more]

BLAST of MELO3C023238 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FY84	5.4e-41	58.86	Probable gamma-secretase subunit PEN-2 OS=Arabidopsis thaliana OX=3702 GN=At5g09...	[more]

BLAST of MELO3C023238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CDI1	5.2e-87	100.00	probable gamma-secretase subunit PEN-2 OS=Cucumis melo OX=3656 GN=LOC103499635 P...	[more]
A0A5A7THJ9	1.1e-65	81.99	Putative gamma-secretase subunit PEN-2 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LK38	1.7e-61	78.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302290 PE=3 SV=1	[more]
A0A6J1I943	6.2e-56	72.12	probable gamma-secretase subunit PEN-2 OS=Cucurbita maxima OX=3661 GN=LOC1114703...	[more]
A0A6J1F097	2.3e-55	71.52	probable gamma-secretase subunit PEN-2 OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of MELO3C023238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09310.1	3.8e-42	58.86	CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenili...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019379	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	PFAM	PF10251	PEN-2	coord: 110..151 e-value: 2.5E-6 score: 27.8 coord: 37..74 e-value: 4.7E-13 score: 49.4
IPR019379	Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit	PANTHER	PTHR16318	GAMMA-SECRETASE SUBUNIT PEN-2	coord: 9..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023238.1	MELO3C023238.1	mRNA