MELO3C023154.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C023154.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr09: 11878946 .. 11879167 (-)
RNA-Seq ExpressionMELO3C023154.jh1
SyntenyMELO3C023154.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGGAGTCAAGAACTCACCGGCGACAATATGGGTCTCCTCGCCGTGGGTCTCCGTCGCCGAGAAGAAAGGACATGGAGATGAGAAGAATGGGGTTAAGGCTAGGGGTTTTCGTCGTGAGTCGTTCGTCGTTCGTGAGGGGAGGAATTTTGAAGAAGAAAAGGGGAGTGTGCGTGAAGAAGAAAAGAGAGGGATTTTGAAGAAGGAAAGTGAGGGATTTT

mRNA sequence

AAAATGGAGTCAAGAACTCACCGGCGACAATATGGGTCTCCTCGCCGTGGGTCTCCGTCGCCGAGAAGAAAGGACATGGAGATGAGAAGAATGGGGTTAAGGCTAGGGGTTTTCGTCGTGAGTCGTTCGTCGTTCGTGAGGGGAGGAATTTTGAAGAAGAAAAGGGGAGTGTGCGTGAAGAAGAAAAGAGAGGGATTTTGAAGAAGGAAAGTGAGGGATTTT

Coding sequence (CDS)

ATGGAGTCAAGAACTCACCGGCGACAATATGGGTCTCCTCGCCGTGGGTCTCCGTCGCCGAGAAGAAAGGACATGGAGATGAGAAGAATGGGGTTAAGGCTAGGGGTTTTCGTCGTGAGTCGTTCGTCGTTCGTGAGGGGAGGAATTTTGAAGAAGAAAAGGGGAGTGTGCGTGAAGAAGAAAAGAGAGGGATTTTGA

Protein sequence

MESRTHRRQYGSPRRGSPSPRRKDMEMRRMGLRLGVFVVSRSSFVRGGILKKKRGVCVKKKREGF
Homology
BLAST of MELO3C023154.jh1 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 1.02e-07
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 31 GLRLGVFVVSRSSFVRGGILKKKRGVCVKKKREGF 65
          G+++GVFV+ RSSFVRGG+LKK RGV VKK+REGF
Sbjct: 57 GVKVGVFVMHRSSFVRGGVLKKDRGVWVKKEREGF 91

BLAST of MELO3C023154.jh1 vs. NCBI nr
Match: KAA0034002.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.1 bits (126), Expect = 1.54e-06
Identity = 34/51 (66.67%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 10 YGSPRRGSPSPRRKDMEMRRMGLRLG----VFVVSRSSFV----RGGILKK 52
          YGSPR GSPS RRKDMEMRRMGLRLG    V VV     V    +GGILKK
Sbjct: 11 YGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVVVVVLEGNVHDEGKGGILKK 61

BLAST of MELO3C023154.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.93e-08
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 31 GLRLGVFVVSRSSFVRGGILKKKRGVCVKKKREGF 65
          G+++GVFV+ RSSFVRGG+LKK RGV VKK+REGF
Sbjct: 57 GVKVGVFVMHRSSFVRGGVLKKDRGVWVKKEREGF 91

BLAST of MELO3C023154.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BST2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00060 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.48e-07
Identity = 34/51 (66.67%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 10 YGSPRRGSPSPRRKDMEMRRMGLRLG----VFVVSRSSFV----RGGILKK 52
          YGSPR GSPS RRKDMEMRRMGLRLG    V VV     V    +GGILKK
Sbjct: 11 YGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVVVVVLEGNVHDEGKGGILKK 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0044825.11.02e-0774.29transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri... [more]
KAA0034002.11.54e-0666.67CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TTV04.93e-0874.29Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5D3BST27.48e-0766.67CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C023154.jh1.t1MELO3C023154.jh1.t1mRNA