MELO3C022984.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C022984.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr05: 5382065 .. 5382774 (+)
RNA-Seq Expression	MELO3C022984.jh1
Synteny	MELO3C022984.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATAGGAGTTTTGATTTAGCAATTTGATATGGATGTGACTCAAAAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGGTACATATTTAAATATTGTATATAATTACTTAAATTATTTATTCAATTAAATATTTTTAATTTGTTTTTACAATTTACAGAGATCGAACAACGCAAAACTTCGTGATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCTCCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGTAAGAAGTGCCTCATATGACACAAACACAGAGCCAAACTGGTTATGATAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGTTTGGTACAGGATATTATGATGCAGGGGTCGATCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACATGGACGTGACTATGGGGAACATAACAAATATCTGTATCATGAAGCATCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACCACATATAGTTCAGAGTCGACGTCGA

mRNA sequence

ATGGTAATAGGAGTTTTGATTTAGCAATTTGATATGGATGTGACTCAAAAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGTCATCTGAGATCGAACAACGCAAAACTTCGTGATGTAGCAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATAGAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCTCCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAGTTTACCATAATGTGTAAGAAGTGCCTCATATGACACAAACACAGAGCCAAACTGGTTATGATAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGTTTGGTACAGGATATTATGATGCAGGGGTCGATCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACATGGACGTGACTATGGGGAACATAACAAATATCTGTATCATGAAGCATCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACCACATATAGTTCAGAGTCGACGTCGA

Coding sequence (CDS)

ATGACACAAACACAGAGCCAAACTGGTTATGATAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTAAGTTTGGTACAGGATATTATGATGCAGGGGTCGATCCATCATCTTCATACATGGATGTCGGTCCATCAACTTCTTACATGCATGGACATGGACGTGACTATGGGGAACATAACAAATATCTGTATCATGAAGCATCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACCACATATAGTTCAGAGTCGACGTCGA

Protein sequence

MTQTQSQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRR

Homology

[Close]

BLAST of MELO3C022984.jh1 vs. NCBI nr
Match: TYK01111.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 2.06e-54
Identity = 87/99 (87.88%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 2   TQTQSQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDY 61
           TQTQSQTGY S MTMMPTFGAGYCDSK GTGYYDAGV PSSSYMDV PSTSYMHGHGR Y
Sbjct: 43  TQTQSQTGYGSPMTMMPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGY 102

Query: 62  GEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSR 100
           G+HN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQ R
Sbjct: 103 GKHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQDR 141

[Close]

BLAST of MELO3C022984.jh1 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (440), Expect = 1.86e-53
Identity = 86/101 (85.15%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 2   TQTQSQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDY 61
           TQTQSQTGY S M MMPTFGAGYCDS+  TGYYDAG+ P SSYMDVGPS SYMHGHGR Y
Sbjct: 37  TQTQSQTGYGSPMMMMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGY 96

Query: 62  GEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRR 102
           GEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR
Sbjct: 97  GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRR 137

[Close]

BLAST of MELO3C022984.jh1 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (428), Expect = 1.11e-50
Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 2   TQTQSQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDY 61
           TQTQSQTGY S MTMMPTF AGYCD + G GYYDAGV PSSSY+DV PSTSYMHGH R Y
Sbjct: 108 TQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGY 167

Query: 62  GEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRR 102
           GEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR
Sbjct: 168 GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRR 208

[Close]

BLAST of MELO3C022984.jh1 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (426), Expect = 1.56e-50
Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 2   TQTQSQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDY 61
           TQTQSQTGY S MTMMPTF AGYCD + G GYYDAGV PSSSY+DV PSTSYMHGH R Y
Sbjct: 96  TQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGY 155

Query: 62  GEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRR 102
           GEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR
Sbjct: 156 GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRR 196

[Close]

BLAST of MELO3C022984.jh1 vs. NCBI nr
Match: KAA0054357.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK12395.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 2.05e-49
Identity = 83/96 (86.46%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 6   SQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHN 65
           SQTGY S MT+MPTFGAGYCDSK  TGYYDAGV PSS YMDVGPS SYMHGHGR YGEHN
Sbjct: 180 SQTGYGSPMTVMPTFGAGYCDSKVSTGYYDAGVGPSSLYMDVGPSNSYMHGHGRGYGEHN 239

Query: 66  KYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRR 101
           +YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRR
Sbjct: 240 QYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRR 275

[Close]

BLAST of MELO3C022984.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BMS3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00070 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 9.96e-55
Identity = 87/99 (87.88%), Postives = 89/99 (89.90%), Query Frame = 0


Query: 2   TQTQSQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDY 61
           TQTQSQTGY S MTMMPTFGAGYCDSK GTGYYDAGV PSSSYMDV PSTSYMHGHGR Y
Sbjct: 43  TQTQSQTGYGSPMTMMPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGY 102

Query: 62  GEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSR 100
           G+HN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQ R
Sbjct: 103 GKHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQDR 141

[Close]

BLAST of MELO3C022984.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 8.99e-54
Identity = 86/101 (85.15%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 2   TQTQSQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDY 61
           TQTQSQTGY S M MMPTFGAGYCDS+  TGYYDAG+ P SSYMDVGPS SYMHGHGR Y
Sbjct: 37  TQTQSQTGYGSPMMMMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGY 96

Query: 62  GEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRR 102
           GEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR
Sbjct: 97  GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRR 137

[Close]

BLAST of MELO3C022984.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 169 bits (428), Expect = 5.37e-51
Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 2   TQTQSQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDY 61
           TQTQSQTGY S MTMMPTF AGYCD + G GYYDAGV PSSSY+DV PSTSYMHGH R Y
Sbjct: 108 TQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGY 167

Query: 62  GEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRR 102
           GEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR
Sbjct: 168 GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRR 208

[Close]

BLAST of MELO3C022984.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 168 bits (426), Expect = 7.54e-51
Identity = 85/101 (84.16%), Postives = 88/101 (87.13%), Query Frame = 0


Query: 2   TQTQSQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDY 61
           TQTQSQTGY S MTMMPTF AGYCD + G GYYDAGV PSSSY+DV PSTSYMHGH R Y
Sbjct: 96  TQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHRRGY 155

Query: 62  GEHNKYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRRR 102
           GEHN+YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRRR
Sbjct: 156 GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRR 196

[Close]

BLAST of MELO3C022984.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UIF6 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001780 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 9.90e-50
Identity = 83/96 (86.46%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 6   SQTGYDSLMTMMPTFGAGYCDSKFGTGYYDAGVDPSSSYMDVGPSTSYMHGHGRDYGEHN 65
           SQTGY S MT+MPTFGAGYCDSK  TGYYDAGV PSS YMDVGPS SYMHGHGR YGEHN
Sbjct: 180 SQTGYGSPMTVMPTFGAGYCDSKVSTGYYDAGVGPSSLYMDVGPSNSYMHGHGRGYGEHN 239

Query: 66  KYLYHEASADVSDRQEYQQEPENQEDREPHIVQSRR 101
           +YLYHEA ADVSDRQEYQQEPENQEDRE H VQSRR
Sbjct: 240 QYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRR 275

The following BLAST results are available for this feature:

BLAST of MELO3C022984.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01111.1	2.06e-54	87.88	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0049532.1	1.86e-53	85.15	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	1.11e-50	84.16	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK01176.1	1.56e-50	84.16	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0054357.1	2.05e-49	86.46	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of MELO3C022984.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C022984.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BMS3	9.96e-55	87.88	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CXX3	8.99e-54	85.15	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	5.37e-51	84.16	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BSG8	7.54e-51	84.16	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7UIF6	9.90e-50	86.46	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]

BLAST of MELO3C022984.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022984.jh1.t1	MELO3C022984.jh1.t1	mRNA