MELO3C022984 (gene) Melon (DHL92) v4

Overview


Name	MELO3C022984
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr06: 27233732 .. 27234433 (-)
RNA-Seq Expression	MELO3C022984
Synteny	MELO3C022984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATAGGAGTTTTGATTCAGTAATTTGATATGGATGTGACTCAAATATACATCCACTAGTATAATAATATTACGAGGCTCTACATTACTCGACTAGGAGCAGTCGTAGGTCATCTGGTACATATTTAAATATTGTATAATTACTTAAATTATTTACTCAATTAAATATTTCTAATTTTTTTTACAATTTACAGATATCGAATGTAAGACTTCATGATGTTGTATGATCCAAAATAAGTCCTTGATATATATAATAATAATGAGAGGTACATGGAGGAGATACATAATACGTACGATCTACCTGTTGTACCGACACCAGTTCATAGGGGATGTATTTGAGTGAAAGAAGCTGAACTAGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCTTATGACATAGACATAGAGTCAAACTGGTTATGGTAGTCCAATGATGCCGATGCCAATATTTGGAGCAGGATATTGTGATACTGAGGTCGATATAGGATATTATGATTCAGGGGTCGATCCATTGTCTTCGTACATGGATGTCGGTCCATTAACTTCTTACATGCATGGACATGGACGTGACTTTGGAGAACATAATGAATATCTGTATCATGAAGCACTTATAGAGGTACCAAACCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGAGCCAGAATAACATAGTGTTCAGAGTCGACGCCGA

mRNA sequence

ATGGCGATAGGAGTTTTGATTCAGTAATTTGATATGGATGTGACTCAAATATACATCCACTAGTATAATAATATTACGAGGCTCTACATTACTCGACTAGGAGCAGTCGTAGGTCATCTGATATCGAATGTAAGACTTCATGATGTTGTATGATCCAAAATAAGTCCTTGATATATATAATAATAATGAGAGGTACATGGAGGAGATACATAATACGTACGATCTACCTGTTGTACCGACACCAGTTCATAGGGGATGTATTTGAGTGAAAGAAGCTGAACTAGATGAAGTTTACCATAATGTGGAAGAAGTGCCTCTTATGACATAGACATAGAGTCAAACTGGTTATGGTAGTCCAATGATGCCGATGCCAATATTTGGAGCAGGATATTGTGATACTGAGGTCGATATAGGATATTATGATTCAGGGGTCGATCCATTGTCTTCGTACATGGATGTCGGTCCATTAACTTCTTACATGCATGGACATGGACGTGACTTTGGAGAACATAATGAATATCTGTATCATGAAGCACTTATAGAGGTACCAAACCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGAGCCAGAATAACATAGTGTTCAGAGTCGACGCCGA

Coding sequence (CDS)

ATGATGCCGATGCCAATATTTGGAGCAGGATATTGTGATACTGAGGTCGATATAGGATATTATGATTCAGGGGTCGATCCATTGTCTTCGTACATGGATGTCGGTCCATTAACTTCTTACATGCATGGACATGGACGTGACTTTGGAGAACATAATGAATATCTGTATCATGAAGCACTTATAGAGGTACCAAACCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGAGCCAGAATAA

Protein sequence

MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEALIEVPNRQEYQQELENQEEPE

Homology

[Close]

BLAST of MELO3C022984 vs. NCBI nr
Match: KAA0060605.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK02266.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 7.0e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
          MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL
Sbjct: 1  MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60

Query: 61 IEVPNRQEYQQELENQEEPE 81
          IEVPNRQEYQQELENQEEPE
Sbjct: 61 IEVPNRQEYQQELENQEEPE 80

[Close]

BLAST of MELO3C022984 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.3e-26
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           MM MP FGAGYCD+EV  GYYD+G+ PLSSYMDVGP  SYMHGHGR +GEHNEYLYHEA 
Sbjct: 49  MMMMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAP 108

Query: 61  IEVPNRQEYQQELENQEEPE 81
            +V +RQEYQQE ENQE+ E
Sbjct: 109 ADVSDRQEYQQEPENQEDRE 128

[Close]

BLAST of MELO3C022984 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 9.8e-25
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M  MP FGAGYCD+EV IGYYD+ V PLSSYMDVGP TSYM+GHGR +GEHNEYLYHEA 
Sbjct: 398 MTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAP 457

Query: 61  IEVPNRQEYQQELENQEEPE 81
            +V +RQEYQQE +NQE+ E
Sbjct: 458 TDVSDRQEYQQEPKNQEDRE 477

[Close]

BLAST of MELO3C022984 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 60/80 (75.00%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M+ MP FG GYCD EV+  YYDSGV P SSYMDVGP TSYMHGH  D+GEHNEYLYHEA 
Sbjct: 117 MIMMPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAP 176

Query: 61  IEVPNRQEYQQELENQEEPE 81
            EV +RQEYQQE ENQEE E
Sbjct: 177 TEVSDRQEYQQEPENQEELE 196

[Close]

BLAST of MELO3C022984 vs. NCBI nr
Match: TYK01111.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M  MP FGAGYCD+++  GYYD+GV P SSYMDV P TSYMHGHGR +G+HNEYLYHEA 
Sbjct: 55  MTMMPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAP 114

Query: 61  IEVPNRQEYQQELENQEEPE 81
            +V +RQEYQQE ENQE+ E
Sbjct: 115 ADVSDRQEYQQEPENQEDRE 134

[Close]

BLAST of MELO3C022984 vs. ExPASy TrEMBL
Match: A0A5A7V414 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00670 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.4e-39
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
          MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL
Sbjct: 1  MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60

Query: 61 IEVPNRQEYQQELENQEEPE 81
          IEVPNRQEYQQELENQEEPE
Sbjct: 61 IEVPNRQEYQQELENQEEPE 80

[Close]

BLAST of MELO3C022984 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           MM MP FGAGYCD+EV  GYYD+G+ PLSSYMDVGP  SYMHGHGR +GEHNEYLYHEA 
Sbjct: 49  MMMMPTFGAGYCDSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAP 108

Query: 61  IEVPNRQEYQQELENQEEPE 81
            +V +RQEYQQE ENQE+ E
Sbjct: 109 ADVSDRQEYQQEPENQEDRE 128

[Close]

BLAST of MELO3C022984 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M  MP FGAGYCD+EV IGYYD+ V PLSSYMDVGP TSYM+GHGR +GEHNEYLYHEA 
Sbjct: 398 MTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGPSTSYMYGHGRGYGEHNEYLYHEAP 457

Query: 61  IEVPNRQEYQQELENQEEPE 81
            +V +RQEYQQE +NQE+ E
Sbjct: 458 TDVSDRQEYQQEPKNQEDRE 477

[Close]

BLAST of MELO3C022984 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.1e-25
Identity = 60/80 (75.00%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M+ MP FG GYCD EV+  YYDSGV P SSYMDVGP TSYMHGH  D+GEHNEYLYHEA 
Sbjct: 117 MIMMPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGPSTSYMHGHRHDYGEHNEYLYHEAP 176

Query: 61  IEVPNRQEYQQELENQEEPE 81
            EV +RQEYQQE ENQEE E
Sbjct: 177 TEVSDRQEYQQEPENQEELE 196

[Close]

BLAST of MELO3C022984 vs. ExPASy TrEMBL
Match: A0A5D3BMS3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00070 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.3e-24
Identity = 56/80 (70.00%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1   MMPMPIFGAGYCDTEVDIGYYDSGVDPLSSYMDVGPLTSYMHGHGRDFGEHNEYLYHEAL 60
           M  MP FGAGYCD+++  GYYD+GV P SSYMDV P TSYMHGHGR +G+HNEYLYHEA 
Sbjct: 55  MTMMPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLYHEAP 114

Query: 61  IEVPNRQEYQQELENQEEPE 81
            +V +RQEYQQE ENQE+ E
Sbjct: 115 ADVSDRQEYQQEPENQEDRE 134

The following BLAST results are available for this feature:

BLAST of MELO3C022984 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060605.1	7.0e-39	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0049532.1	2.3e-26	75.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK23842.1	9.8e-25	73.75	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0025972.1	1.7e-24	75.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK01111.1	1.1e-23	70.00	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]

BLAST of MELO3C022984 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C022984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V414	3.4e-39	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CXX3	1.1e-26	75.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3DJV7	4.8e-25	73.75	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7SLF8	8.1e-25	75.00	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3BMS3	5.3e-24	70.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]

BLAST of MELO3C022984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022984.1	MELO3C022984.1	mRNA