MELO3C022483 (gene) Melon (DHL92) v4

Overview


Name	MELO3C022483
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RNA polymerase sigma factor
Location	chr11: 31521895 .. 31526434 (+)
RNA-Seq Expression	MELO3C022483
Synteny	MELO3C022483

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACTCCTCTTCTTCTCTCAACCCATTCTCCATTGCTTCTTCTTCTTCTTCTTCTTCACCAATCAACTCAATTCCCCATCTTTGAAACCTTCCATCAATCTTCATTTTTCAAGCTCCCAATGAAACCCTTTTCTTATGCACCGCATTTCCCCTTCTGGGTACTTCATTTTTGAATGCCTTCATTTATGTCCGCCACAGTTGCAGAGTAACAGAAATCCAGTTGGAGCTCGAAGAAGAACAACATCAACAGGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCACCCCGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATAATTCTCACCATCATTCCTTTATTCCTACTGCTTATTCCAGTTACAGTGAGTGTTTTTTTTTCTCTCTCTCATTCTCTCTTTCTTTACCTTTTTTCCCGTGTTGTTCAAATGGGGTTTTGGTGTTCTGGGTTGCTTTCTTGTCGAGCTGGGGTAAAATGTGTTCTGCTAGTTGCTAAGTTCAGCCATATGTTCAAGTTTTTGAGTTGCATTGCTTGAATTTCTGTCCTGACATTCTTTGTTTTAGGTGGCGCGAGGCTTTAAGTTCTAGTTTACATCAAAACATTTCTCAGACGGTGCTGATATCGATGTTATTATTGTGTTTGAATATGATTGAAATTTAAATTTACCTTTTCAAATAGTATTGTGTAAGTTTGTTTTAAATGACAGAATGTTCTTCTTTCTTTTGGACTGCTAGGATGTGTTATGGGTGCCCAATGGAGTGATTGGGAAATATGTCCAATCCAATTTTCAGAGAAAAAAAATTATAGTAAAAAACAAAAAGATACCCTAAGGAAACATAATGATGAAAGTAGTTTTTTAAACCAGTCATTCAATTAGTCTATACTTTATCCAAATTATCATTGGTTTTGAGTTCAATAACATGTGAAATGGAGTGGAGAGATTCAAATATTTGATCTCTTGGTTGAAAGTATACGTTTTTAGCAGTTCAGCATAACACCCAAATTATCATCAATGATGTATATAATAGTAGTTGAGCAGAATGTTAGCTAGGTGTAGCTCTGTAGGTGACGGATCAATTATAGTCACACACAAAGTATCCAACAATGCAGAAAAAAGTTTAGACCAACTTTGGAACTCCTGAAGACCAATCAAAGACCTCCTTCCTCATTTTAAACATTTCCACTCCACCCCCAACCCCATCTATTATTTTTTAATACAATAGCGGTGGTAGAGATATTTGAAACACAAACCTCTTGGTCAATTGTTGCTAGGTGAGCTATGCTCATTTTGTTTTCTTTAAACATTTTATTGCATAGTCTTGAGTTGGTATTTCTTATCTACAGTGGTAAGTAAGGAAAGTCTCAAGTATATGAAATTTGGAACTATTTTTTACTCCAGATGATGATAGAGTAAGAAGCGAGGTTTTGTGTGTCAATTTCTACTTTTATTATGAAACACTTTTAAAACAACTGACTCTATGATTAAAGTTTTAGTGGATGATTATATTGATGATCCATCTTTACCAAGGGACTGTTTGGTTGACTTTTTCACTCCTCAAAGACATTTTTTTTCCTCTTAAAAATACTTTTTTAAGCATTTAGAAGGCAATCCAAACAGACTTAAAGTCTATAACCCAAGAAGTTCATTCAGGGTGAAAGATTTTTATTGAAAACCTTTTCTTATAAATTTTCTAATCATGCAGCTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGACCGGAACAGCTACAACACTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCTTATTTAGGTGCAGTTGAATCGAGTCTAGCCTCTACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCGGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATATCAACTCTTCCAGAGCAGGAACAAAATCTCAACCTTCTCCCAAACCTGATGCTTTACATTTCAAATGGGCTCAATTTATGGAATCGGAAAGAGCTGACATAATAGGAGAACCAGTTGGAGTTAATAAACGCCCCATCGAAGGCGATGCTTTGGAACCCAGCACAACAGAATCTGATGATGTGGAGCCAACATCAAAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAAGTCAAAGCGTCAAACAGAAAGGAAAGCGAGAAGAACTAGAGCAGCAGAGAAGACTGTTACTAGTGTAGTGCCGTTCAAGTCTGGTTCTAGCAGTCGGAAGAAGCGCAGTTCTTTACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACCTCCAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGTTTGATTTTGTTAATTAAATCAACTCATTTGTGTCTTCATTAAATTCCGCGGTAAGATAAGAACTCTATTTTACAGTTGATAGCAAATCTGGATTTGTTTGTTTGTAACCCAGAAACATTATTTCAAGTAATTTTTATAATCCATCTCATTTGGATAAAATTTTCAAGAAAAACTGGGAATAGAAAATGTGAAACAAATGAAGTGGATATACTCGATCCACCCTAGATAAATTTAGCTTTATTCTGTTTTTTTTACAGCCTAGCAGTTCTCTTCATTTATGAAGAAGATATGCAGACAAAAGTCCCGGGCATGGTGGTATTAGTTTAAGGTTACTGATCACACTATTATGTTCTTTGAAACTTCCAATAAGTTGTCTGATCCAGCGACTAAATAGAATCTAATTTTAGTTGCCTATCTTCAATTTGATTCCTATATTGGAATACATAGATTGATGCTATTGATCAATGATCAACACCAGTGGCTCTTAGATGGTGATTTTGGGTTAATTTTGATTTCCTGATTTATGTCTTATATTCCATGCTTTCTTTTGATTTCTGATATTTGCTTCAACTATTTCCTAATCCAGGATTTACTGAAACTGGAACGGCTTCAGGAGGAGCTTGCCGAACGATATGGGAATGAACCAACCTTTGCACAATGGGCAGCTGCTGCTGGCGTCAATCAAAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTGCAAGATCTAGTTCAGGTACTTTTTTGTTGTTGGACTCCAGGCAAAATGCTTATGGATGGAAACCGAAATTATGTCTTGCTTTAATTTCAAATTACTCATTGCTTGTGTTTTAACGTGCAGGAAGGATGTCGAGGCCTTGTAAGGGGTGCAGAGAAGTTTGATGCATCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAAGCAGTGCGAAAGTTTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCAGTATGTTTCTTTTTCCCAGCATTTGTTTAGTAAAAATTGCTTTGAAGAGAAACAAATTCATTGTGGAAGTAGGGAGAAAAAAAATTAACCTATGGAAGTCCAAAAGAACTTGCTAATTGAAGAAATTTCATTCCTCACACTTCTCCAATAATCAACGTTGATGAATGGGCAGTTCCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATTAAGTGAAAATGGCAGACATCCTGATGACAAAGAAATTGCTGAAGCAGCCGGGCTTTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCAAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGTTCGTCTTATTGCTACTCAGTTCCTTTTCCTGTTTCTCATGGCAATATCACCATCTTTGACCTATTTGATTTTCATGCTCTTCACCAGGAAGTCATTTCCGATCCGGAAGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGATCTCGAAAAGGTACTCGACTCCCTTAACCCAAGAGAGAAACAAGTAATTAGATGGAGGTTTGGAATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGATGAGTCTCCATCAGATTTCAAGAGTTAGATTCCTCCAAAAGTAATTTATTATCTCATCTGATATGAGGCTTAAACAAGGCTGGTTCTTTCTTTCTTTATTTACTTTCTTTTCCCTTTCTCTGTAACATATATTATTATGCATCTTTTTTCATTTCAGGATAGAGTAATATCTGATTGTTTACAGAACGTTAGGTACTTTTTCTGTTCATACATAATTCAATTTTCAATCAAGAAATCTATCGTAATTAC

mRNA sequence

TCCACTCCTCTTCTTCTCTCAACCCATTCTCCATTGCTTCTTCTTCTTCTTCTTCTTCACCAATCAACTCAATTCCCCATCTTTGAAACCTTCCATCAATCTTCATTTTTCAAGCTCCCAATGAAACCCTTTTCTTATGCACCGCATTTCCCCTTCTGGGTACTTCATTTTTGAATGCCTTCATTTATGTCCGCCACAGTTGCAGAGTAACAGAAATCCAGTTGGAGCTCGAAGAAGAACAACATCAACAGGGCGATGTCGTGTTTACTTCCCCAATTCAAGTGCCACCCCGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATAATTCTCACCATCATTCCTTTATTCCTACTGCTTATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGACCGGAACAGCTACAACACTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCTTATTTAGGTGCAGTTGAATCGAGTCTAGCCTCTACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCGGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATATCAACTCTTCCAGAGCAGGAACAAAATCTCAACCTTCTCCCAAACCTGATGCTTTACATTTCAAATGGGCTCAATTTATGGAATCGGAAAGAGCTGACATAATAGGAGAACCAGTTGGAGTTAATAAACGCCCCATCGAAGGCGATGCTTTGGAACCCAGCACAACAGAATCTGATGATGTGGAGCCAACATCAAAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAAGTCAAAGCGTCAAACAGAAAGGAAAGCGAGAAGAACTAGAGCAGCAGAGAAGACTGTTACTAGTGTAGTGCCGTTCAAGTCTGGTTCTAGCAGTCGGAAGAAGCGCAGTTCTTTACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACCTCCAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGATTTACTGAAACTGGAACGGCTTCAGGAGGAGCTTGCCGAACGATATGGGAATGAACCAACCTTTGCACAATGGGCAGCTGCTGCTGGCGTCAATCAAAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTGCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTAAGGGGTGCAGAGAAGTTTGATGCATCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAAGCAGTGCGAAAGTTTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTCCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATTAAGTGAAAATGGCAGACATCCTGATGACAAAGAAATTGCTGAAGCAGCCGGGCTTTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCAAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGAAGTCATTTCCGATCCGGAAGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGATCTCGAAAAGGTACTCGACTCCCTTAACCCAAGAGAGAAACAAGTAATTAGATGGAGGTTTGGAATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGATGAGTCTCCATCAGATTTCAAGAGTTAGATTCCTCCAAAAGTAATTTATTATCTCATCTGATATGAGGCTTAAACAAGGCTGGTTCTTTCTTTCTTTATTTACTTTCTTTTCCCTTTCTCTGTAACATATATTATTATGCATCTTTTTTCATTTCAGGATAGAGTAATATCTGATTGTTTACAGAACGTTAGGTACTTTTTCTGTTCATACATAATTCAATTTTCAATCAAGAAATCTATCGTAATTAC

Coding sequence (CDS)

ATGTCGTGTTTACTTCCCCAATTCAAGTGCCACCCCGAAACATTCTCAATCCAATTCAAGACCGCGGCTAATAATTCTCACCATCATTCCTTTATTCCTACTGCTTATTCCAGTTACACTAAAGTGAGAGATCCTCATAGTTTAAGGACACAATGTATCTTGTCTGCAGCATCACCACCAACATCGACCGGAACAGCTACAACACTCAATGTGGATCGACTTAAATTGCCTCCTTTTGATACTAACACCGACTCAGTCTCTGTGGAAAGACTAAGATCTTATTTAGGTGCAGTTGAATCGAGTCTAGCCTCTACACTTCTTACCAGTGAGGAGGCTACAATAGCAGCTGCGGCAGCTGAAGCTGTTACTCTTGCAAAAGCAGCTGTCAAGGTTGCAAGGGATGCAGCTCTTCTGGCTAACAATATCAACTCTTCCAGAGCAGGAACAAAATCTCAACCTTCTCCCAAACCTGATGCTTTACATTTCAAATGGGCTCAATTTATGGAATCGGAAAGAGCTGACATAATAGGAGAACCAGTTGGAGTTAATAAACGCCCCATCGAAGGCGATGCTTTGGAACCCAGCACAACAGAATCTGATGATGTGGAGCCAACATCAAAAGAACTTGAACTTTTACAGGATGAACTCTCTGAGAGTATAACTGTAAAGTCAAAGCGTCAAACAGAAAGGAAAGCGAGAAGAACTAGAGCAGCAGAGAAGACTGTTACTAGTGTAGTGCCGTTCAAGTCTGGTTCTAGCAGTCGGAAGAAGCGCAGTTCTTTACAAGAAGTGGACTACTCTGACCCATTGCGTTATTTAAGAGCAACTACTAGCACCTCCAGACTTCTTACTGCAACTGAAGAACTTGAACTGTCAGAAGGAATTCAGGATTTACTGAAACTGGAACGGCTTCAGGAGGAGCTTGCCGAACGATATGGGAATGAACCAACCTTTGCACAATGGGCAGCTGCTGCTGGCGTCAATCAAAGGACACTGAGGAAGCGTCTAAATTATGGTACTCTTTGTAAAGACAAAATGATAAAAAGCAATATTCGTCTTGTCATATCGATTGCAAAAAATTATCAGGGAGCTGGGATGAATCTGCAAGATCTAGTTCAGGAAGGATGTCGAGGCCTTGTAAGGGGTGCAGAGAAGTTTGATGCATCAAAAGGCTTCAAGTTTTCAACCTATGCTCATTGGTGGATAAAGCAAGCAGTGCGAAAGTTTCTTTCTGATCAGTCCAGGACTATTCGCTTGCCATTCCACATGGTGGAAGCAACTTATAGGGTGAAGGAGGCTAGAAAGCAATTATTAAGTGAAAATGGCAGACATCCTGATGACAAAGAAATTGCTGAAGCAGCCGGGCTTTCGATGAAGAGGCTTGCTGCAGTACTAATGACTCCAAAAGCACCCAGATCCTTGGAGCAGAAAATCGGAATAAACCAAAATCTCAAACCATCGGAAGTCATTTCCGATCCGGAAGCAGAAACTGCTGAAGATATGTTGATAAAACAATTCATGAAGCAGGATCTCGAAAAGGTACTCGACTCCCTTAACCCAAGAGAGAAACAAGTAATTAGATGGAGGTTTGGAATGGAAGATGGGAGGATGAAAACATTGCAAGAAATAGGAGAAATAATGGGTGTAAGTAGGGAAAGAATTAGACAAATTGAATCATGTGCATTCAGAAAACTCAAAAACAAGAAGAGAACTAAACATTTGCAGCAGTATCTGATGTCATGA

Protein sequence

MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS

Homology

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BLAST of MELO3C022483 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 648.3 bits (1671), Expect = 8.4e-185
Identity = 373/594 (62.79%), Postives = 449/594 (75.59%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPPT 61
           SCLLPQFKC P++FSI F+T        SF    ++  +    P     QC +S  SP  
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT--------SFCAPKHNKGSVFFQP-----QCAVS-TSPAL 62

Query: 62  STGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            T   + L+V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  LT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAALL--ANNINSSRAGTKSQPSPKPDALHFKWAQFMES 181
            + AAAAEAV LA+AAVKVA+DA L   +NN N   + T  + S        KW QF E 
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLLTSSTADKRS--------KWDQFTEK 182

Query: 182 ERADIIGEPVGVNKRPIEGDALEPSTTESDDV----EPTSKELELLQDELSESITVKSKR 241
           ERA I+G  + V+   I  D +  S +  + +        +E+ELL+++ S S+ V+S R
Sbjct: 183 ERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTR 242

Query: 242 QTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTAT 301
           QTERKARR +  EKT + +   K+GSS +KKR   QEVD++DPLRYLR TTS+S+LLT  
Sbjct: 243 QTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVR 302

Query: 302 EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKM 361
           EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKM
Sbjct: 303 EEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKM 362

Query: 362 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 421
           IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAV
Sbjct: 363 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAV 422

Query: 422 RKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLM 481
           RK LSDQSR IRLPFHMVEATYRVKEARKQL SE G+HP ++EIAEA GLSMKRL AVL+
Sbjct: 423 RKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLL 482

Query: 482 TPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVI 541
           +PK PRSL+QKIG+NQNLKPSEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL  REKQVI
Sbjct: 483 SPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVI 542

Query: 542 RWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           RWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 RWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

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BLAST of MELO3C022483 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-75
Identity = 154/332 (46.39%), Postives = 224/332 (67.47%), Query Frame = 0


Query: 249 KSG--SSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQE 308
           KSG  + SR++  S ++    D +R         RLL A EE+EL+  I DLL+LER++E
Sbjct: 59  KSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRE 118

Query: 309 ELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGM 368
            L+E+   +P  ++WA A  +     R RL+ G   KDKM++SN+RLV+SIAK Y   G+
Sbjct: 119 RLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGL 178

Query: 369 NLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEA 428
           + QDL+QEG  GL+R AEKFD  KG+KFSTYA WWI+QA+ + ++DQSRTIRLP H+ E 
Sbjct: 179 SFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYET 238

Query: 429 TYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKP 488
             R+K+  K L  E GR P ++EIA    +++++L  +  + + P SLE  IG  ++ + 
Sbjct: 239 ISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRL 298

Query: 489 SEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEI 548
            + I + + ET ED + K  +++DLEKVLDSL+PRE+ V+R R+G++DGRMKTL+EIG+I
Sbjct: 299 GDFI-ESDGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQI 358

Query: 549 MGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 579
             V+RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 359 FNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

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BLAST of MELO3C022483 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 276.9 bits (707), Expect = 5.1e-73
Identity = 161/382 (42.15%), Postives = 240/382 (62.83%), Query Frame = 0


Query: 210 ELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPF-------------KSGSSSRK 269
           ELL   L  + T K+KR + +KA  T A  +  T++ P              +   ++ K
Sbjct: 21  ELLDPALKPAET-KAKRSSRKKA--TTAVVEPATTIAPTADVDAIDDEDSVGEDEDAAAK 80

Query: 270 KRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEP 329
            ++ +++    D +R         RLL A EE+EL+  I DLL LER+++EL E+    P
Sbjct: 81  AKAKVRKTYTEDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDELLEQLDRLP 140

Query: 330 TFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGC 389
           + A+WAAA        R+RL  G   KDKM++SN+RLV+SIAK Y   G++ QDL+QEG 
Sbjct: 141 SDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGS 200

Query: 390 RGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQ 449
            GL+R AEKFD  KG+KFSTYA WWI+QA+ + ++DQSRTIRLP H+ E   R+K+  K 
Sbjct: 201 LGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKL 260

Query: 450 LLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAE 509
           L  E GR P ++EIA    +++++L  +  + + P SLE  IG  ++ +  + I + + E
Sbjct: 261 LSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGE 320

Query: 510 TAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQ 569
           T ED + K  +++DLE VL +L+PRE+ V+R R+G++DGRMKTL+EIG++  V+RERIRQ
Sbjct: 321 TPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMKTLEEIGQLFNVTRERIRQ 380

Query: 570 IESCAFRKLKNKKRTKHLQQYL 579
           IE+ A RKL++  R   L++Y+
Sbjct: 381 IEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of MELO3C022483 vs. ExPASy Swiss-Prot
Match: P52322 (RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.9e-64
Identity = 156/417 (37.41%), Postives = 232/417 (55.64%), Query Frame = 0


Query: 201 DVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSS 260
           D +   +++EL  +E S+S   K  R+     RR  A +K  T                 
Sbjct: 23  DEDFDDEDIELELEETSDSNDGKKTRRLASARRRDAARKKPYT----------------- 82

Query: 261 LQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEE------------- 320
                  D +R         RLL A EE+EL+  I DLLKLER++E+             
Sbjct: 83  ------EDSIRIYLQEIGRIRLLRAEEEIELARKIADLLKLERIREDFCLYSDAEWGKQV 142

Query: 321 ---------LAERYGNEPTFA-----------------QWAAAAGVNQRTLRKRLNYGTL 380
                    + E+   EP  +                 +W A +       ++RL +G  
Sbjct: 143 FLFERIEKIIVEKSEKEPKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRR 202

Query: 381 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 440
            K+KM++SN+RLV+SIAK Y   G++ QDL+QEG  GL+R AEKFD  KG+KFSTYA WW
Sbjct: 203 AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWW 262

Query: 441 IKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRL 500
           I+QA+ + ++DQSRTIRLP H+ E   R+K+  K L  E  R P ++EIA    +++++L
Sbjct: 263 IRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIATKMEMTIEKL 322

Query: 501 AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR 560
             +  + + P SLE  IG  ++ +  + I + + ET ED + K  +++DLE VLD+L+PR
Sbjct: 323 RFIAKSAQLPISLETPIGKEEDSRLGDFI-EADGETPEDEVSKNLLREDLENVLDTLSPR 382

Query: 561 EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL 579
           E+ V+R R+G++DGRMKTL+EIG+I  V+RERIRQIE+ A RKL++  R   L++Y+
Sbjct: 383 ERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 415

[Close]

BLAST of MELO3C022483 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.6e-63
Identity = 139/356 (39.04%), Postives = 214/356 (60.11%), Query Frame = 0


Query: 222 VKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSR 281
           V+SKRQ ER+A+  RA +        +    +S KK+   Q  D  D L+       T +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 247

Query: 282 LLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTL 341
           LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++ G  
Sbjct: 248 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 307

Query: 342 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 401
            ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+WW
Sbjct: 308 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 367

Query: 402 IKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRL 461
           I+Q++RK +   SRTIRLP ++     +V EARK  + E    P  +E+A   G+S ++L
Sbjct: 368 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 427

Query: 462 AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR 521
             +L   + P S++Q I  +Q+    E+  D   ET    + KQ M+  +  +L+ L+P+
Sbjct: 428 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 487

Query: 522 EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 578
           E+++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 488 ERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of MELO3C022483 vs. NCBI nr
Match: XP_008460092.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo])

HSP 1 Score: 1094.0 bits (2828), Expect = 0.0e+00
Identity = 580/580 (100.00%), Postives = 580/580 (100.00%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580

[Close]

BLAST of MELO3C022483 vs. NCBI nr
Match: XP_004154029.1 (RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical protein Csa_004860 [Cucumis sativus])

HSP 1 Score: 1065.8 bits (2755), Expect = 1.3e-307
Identity = 563/580 (97.07%), Postives = 574/580 (98.97%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAAN SHHHSF+PTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTL+VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQ SPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRP+EGDALEPSTTESDD+EPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSV+ FKSGSSSRKKR+S+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLL ENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAET EDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of MELO3C022483 vs. NCBI nr
Match: XP_008460093.1 (PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo])

HSP 1 Score: 1050.0 bits (2714), Expect = 7.3e-303
Identity = 563/580 (97.07%), Postives = 563/580 (97.07%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT                 SPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT-----------------SPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 563

[Close]

BLAST of MELO3C022483 vs. NCBI nr
Match: KAA0039984.1 (RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa] >TYK24518.1 RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 1032.7 bits (2669), Expect = 1.2e-297
Identity = 546/548 (99.64%), Postives = 548/548 (100.00%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMG 549
           QEIGEIMG
Sbjct: 541 QEIGEIMG 548

[Close]

BLAST of MELO3C022483 vs. NCBI nr
Match: XP_038875580.1 (RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida])

HSP 1 Score: 1031.9 bits (2667), Expect = 2.0e-297
Identity = 549/581 (94.49%), Postives = 565/581 (97.25%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNS-HHHSFIPTAYSSYTKVRDPHSLRTQCILSAASP 60
           MSCLLPQFKCHPETFSIQFKTAAN + HHH+F+PTA SSYTKVRDPHSLRTQCILSAASP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYAPHHHTFLPTANSSYTKVRDPHSLRTQCILSAASP 60

Query: 61  PTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA 120
           PTSTGTATTLNVDRL LPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA
Sbjct: 61  PTSTGTATTLNVDRLMLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAA 120

Query: 121 EAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEP 180
           EAV LAKAAVKVARDAALLANN NSSRAG KS+ SP+PDALHFKWAQFMESERADIIGEP
Sbjct: 121 EAVALAKAAVKVARDAALLANNSNSSRAGEKSRSSPRPDALHFKWAQFMESERADIIGEP 180

Query: 181 VGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAE 240
           VGVN RP+E DAL+PSTT+SDD+EPTS+ELELLQDELSESITV+SKRQTERKARRTRAAE
Sbjct: 181 VGVNNRPMETDALQPSTTKSDDMEPTSEELELLQDELSESITVRSKRQTERKARRTRAAE 240

Query: 241 KTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLL 300
           KT TSVV  KSGSSSRKKR+SLQEVDYSDPLRYLRATTSTSRLLTA EELELSEGIQDLL
Sbjct: 241 KTATSVVSLKSGSSSRKKRNSLQEVDYSDPLRYLRATTSTSRLLTAAEELELSEGIQDLL 300

Query: 301 KLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360
           KLERLQEELA+RYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK
Sbjct: 301 KLERLQEELADRYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAK 360

Query: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRL 420
           NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQSRTIRL
Sbjct: 361 NYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRL 420

Query: 421 PFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480
           PFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG
Sbjct: 421 PFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIG 480

Query: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKT 540
           INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRE+QVIRWRFGMEDGRMKT
Sbjct: 481 INQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPRERQVIRWRFGMEDGRMKT 540

Query: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYL+S
Sbjct: 541 LQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLIS 581

[Close]

BLAST of MELO3C022483 vs. ExPASy TrEMBL
Match: A0A1S3CD00 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 1094.0 bits (2828), Expect = 0.0e+00
Identity = 580/580 (100.00%), Postives = 580/580 (100.00%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 580

[Close]

BLAST of MELO3C022483 vs. ExPASy TrEMBL
Match: A0A0A0K917 (RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1)

HSP 1 Score: 1065.8 bits (2755), Expect = 6.2e-308
Identity = 563/580 (97.07%), Postives = 574/580 (98.97%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAAN SHHHSF+PTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANYSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTL+VDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEA+IAAAAAE
Sbjct: 61  TSTGTATTLDVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEASIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQ SPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQSSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRP+EGDALEPSTTESDD+EPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPMEGDALEPSTTESDDMEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSV+ FKSGSSSRKKR+S+QEVDYSDPLRYLRATT+TSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVLSFKSGSSSRKKRNSVQEVDYSDPLRYLRATTNTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEEL ERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELGERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLL ENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLHENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAET EDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETCEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+MS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVMS 580

[Close]

BLAST of MELO3C022483 vs. ExPASy TrEMBL
Match: A0A1S3CBA5 (RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1)

HSP 1 Score: 1050.0 bits (2714), Expect = 3.5e-303
Identity = 563/580 (97.07%), Postives = 563/580 (97.07%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT                 SPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYT-----------------SPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 QEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 563

[Close]

BLAST of MELO3C022483 vs. ExPASy TrEMBL
Match: A0A5A7T955 (RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00600 PE=3 SV=1)

HSP 1 Score: 1032.7 bits (2669), Expect = 5.8e-298
Identity = 546/548 (99.64%), Postives = 548/548 (100.00%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPP 60
           MSCLLPQFKCHPETFSIQFKTAANNSHHHSF+PTAYSSYTKVRDPHSLRTQCILSAASPP
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTAANNSHHHSFLPTAYSSYTKVRDPHSLRTQCILSAASPP 60

Query: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120
           TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE
Sbjct: 61  TSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEATIAAAAAE 120

Query: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180
           AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV
Sbjct: 121 AVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERADIIGEPV 180

Query: 181 GVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKARRTRAAEK 240
           GVNKRPIEGDALEPSTTESDDVEPTS+ELELLQDELSESITVKSKRQTERKARRTRAAEK
Sbjct: 181 GVNKRPIEGDALEPSTTESDDVEPTSEELELLQDELSESITVKSKRQTERKARRTRAAEK 240

Query: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300
           TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK
Sbjct: 241 TVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLK 300

Query: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360
           LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN
Sbjct: 301 LERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKN 360

Query: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420
           YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP
Sbjct: 361 YQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLP 420

Query: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480
           FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI
Sbjct: 421 FHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGI 480

Query: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540
           NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL
Sbjct: 481 NQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTL 540

Query: 541 QEIGEIMG 549
           QEIGEIMG
Sbjct: 541 QEIGEIMG 548

[Close]

BLAST of MELO3C022483 vs. ExPASy TrEMBL
Match: A0A6J1DSR7 (RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 SV=1)

HSP 1 Score: 968.8 bits (2503), Expect = 1.0e-278
Identity = 520/587 (88.59%), Postives = 541/587 (92.16%), Query Frame = 0


Query: 1   MSCLLPQFKCHPETFSIQFK-------TAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCI 60
           MSCLLPQFKCHPETFSIQFK       T AN SHHH+F+PTA SS TKVRDPHSLRTQCI
Sbjct: 1   MSCLLPQFKCHPETFSIQFKTTAITVTTTANYSHHHNFLPTANSSCTKVRDPHSLRTQCI 60

Query: 61  LSAASPPTSTGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGAVESSLASTLLTSEEAT 120
           LSAASP TSTGTATT NV+RLKLPP D NTDS+S ERLRSYL AVESS ASTLLTSEEAT
Sbjct: 61  LSAASPSTSTGTATTFNVERLKLPPLDANTDSISAERLRSYLSAVESSFASTLLTSEEAT 120

Query: 121 IAAAAAEAVTLAKAAVKVARDAALLANNINSSRAGTKSQPSPKPDALHFKWAQFMESERA 180
           IAAAAAEAVTLAKAAVKVA+DAALL NN NSS+ G KSQ S K DALHFKW QFMESERA
Sbjct: 121 IAAAAAEAVTLAKAAVKVAKDAALLVNNSNSSKTGKKSQSSSKSDALHFKWDQFMESERA 180

Query: 181 DIIGEPVGVNKRPIEGDALEPSTTESDDVEPTSKELELLQDELSESITVKSKRQTERKAR 240
           DIIG PVGVN RP EGDAL+  T ESD  +PT++ELELLQDELS +I V+S+RQTER+A+
Sbjct: 181 DIIGVPVGVNNRPAEGDALQHDTAESDYTDPTTEELELLQDELS-NIAVRSRRQTERRAK 240

Query: 241 RTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEELELSE 300
           RTRAAEK  TSVV  KSGSSSRKKR+S+QEVDYSDPLRYLRATTS SRLLTATEELELSE
Sbjct: 241 RTRAAEKIATSVVSVKSGSSSRKKRNSVQEVDYSDPLRYLRATTSNSRLLTATEELELSE 300

Query: 301 GIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKSNIRL 360
           GIQDLLKLERLQEEL ERYG EPTFAQWAAAAGVNQRTLRKRLNYGT CKDKMIKSNIRL
Sbjct: 301 GIQDLLKLERLQEELRERYGKEPTFAQWAAAAGVNQRTLRKRLNYGTFCKDKMIKSNIRL 360

Query: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKFLSDQ 420
           VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRK LSDQ
Sbjct: 361 VISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQ 420

Query: 421 SRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPKAPRS 480
           SRTIRLPFHMVEATYRVKEARKQL SENGRHPDD+EIAEAAGLSMKRLAAVLMTPKAPRS
Sbjct: 421 SRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEIAEAAGLSMKRLAAVLMTPKAPRS 480

Query: 481 LEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVIRWRFGME 540
           LEQKIGINQNLKPSEVISDPEAET+ED+LIKQFMKQDLEKVLDSLNPRE+QVIRWRFGME
Sbjct: 481 LEQKIGINQNLKPSEVISDPEAETSEDLLIKQFMKQDLEKVLDSLNPRERQVIRWRFGME 540

Query: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS
Sbjct: 541 DGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 586

[Close]

BLAST of MELO3C022483 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 648.3 bits (1671), Expect = 5.9e-186
Identity = 373/594 (62.79%), Postives = 449/594 (75.59%), Query Frame = 0


Query: 2   SCLLPQFKCHPETFSIQFKTAANNSHHHSFIPTAYSSYTKVRDPHSLRTQCILSAASPPT 61
           SCLLPQFKC P++FSI F+T        SF    ++  +    P     QC +S  SP  
Sbjct: 3   SCLLPQFKCPPDSFSIHFRT--------SFCAPKHNKGSVFFQP-----QCAVS-TSPAL 62

Query: 62  STGTATTLNVDRLKLPPFDTNTDSVSVERLRSYLGA---------VESSLASTLLTSEEA 121
            T   + L+V +L+LP FDT++DS+  +R  +Y            +E+  + TLLTS+EA
Sbjct: 63  LT---SMLDVAKLRLPSFDTDSDSLISDRQWTYTRPDGPSTEAKYLEALASETLLTSDEA 122

Query: 122 TIAAAAAEAVTLAKAAVKVARDAALL--ANNINSSRAGTKSQPSPKPDALHFKWAQFMES 181
            + AAAAEAV LA+AAVKVA+DA L   +NN N   + T  + S        KW QF E 
Sbjct: 123 VVVAAAAEAVALARAAVKVAKDATLFKNSNNTNLLTSSTADKRS--------KWDQFTEK 182

Query: 182 ERADIIGEPVGVNKRPIEGDALEPSTTESDDV----EPTSKELELLQDELSESITVKSKR 241
           ERA I+G  + V+   I  D +  S +  + +        +E+ELL+++ S S+ V+S R
Sbjct: 183 ERAGILGH-LAVSDNGIVSDKITASASNKESIGDLESEKQEEVELLEEQPSVSLAVRSTR 242

Query: 242 QTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTAT 301
           QTERKARR +  EKT + +   K+GSS +KKR   QEVD++DPLRYLR TTS+S+LLT  
Sbjct: 243 QTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTVR 302

Query: 302 EELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKM 361
           EE ELS GIQDLLKLERLQ EL ER G +PTFAQWA+AAGV+Q++LR+R+++GTLCKDKM
Sbjct: 303 EEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKM 362

Query: 362 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAV 421
           IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDA+KGFKFSTYAHWWIKQAV
Sbjct: 363 IKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAV 422

Query: 422 RKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLM 481
           RK LSDQSR IRLPFHMVEATYRVKEARKQL SE G+HP ++EIAEA GLSMKRL AVL+
Sbjct: 423 RKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLL 482

Query: 482 TPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPREKQVI 541
           +PK PRSL+QKIG+NQNLKPSEVI+DPEA T+ED+LIK+FM+QDL+KVLDSL  REKQVI
Sbjct: 483 SPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVI 542

Query: 542 RWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLMS 581
           RWRFGMEDGRMKTLQEIGE+MGVSRER+RQIES AFRKLKNKKR  HLQQYL++
Sbjct: 543 RWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLVA 570

[Close]

BLAST of MELO3C022483 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 245.4 bits (625), Expect = 1.2e-64
Identity = 139/356 (39.04%), Postives = 214/356 (60.11%), Query Frame = 0


Query: 222 VKSKRQTERKARRTRAAEKTVTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSR 281
           V+SKRQ ER+A+  RA +        +    +S KK+   Q  D  D L+       T +
Sbjct: 188 VRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYK-QGADNDDALQLFLWGPETKQ 247

Query: 282 LLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTL 341
           LLTA EE EL   IQ LLKLE+++ +L  + G EPT  +WA A G++   L+  ++ G  
Sbjct: 248 LLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRS 307

Query: 342 CKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWW 401
            ++K+I +N+RLV+ IAK YQ  G+N QDL+QEG  GL++  EKF    G +F+TYA+WW
Sbjct: 308 SREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWW 367

Query: 402 IKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRL 461
           I+Q++RK +   SRTIRLP ++     +V EARK  + E    P  +E+A   G+S ++L
Sbjct: 368 IRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKL 427

Query: 462 AAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDSLNPR 521
             +L   + P S++Q I  +Q+    E+  D   ET    + KQ M+  +  +L+ L+P+
Sbjct: 428 DKLLYNTRTPLSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPK 487

Query: 522 EKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 578
           E+++I+ RFG++ G+ ++L EIGEI G+S+ER+RQ+ES A  +LK    +  L  Y
Sbjct: 488 ERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQNMNSHGLHAY 542

[Close]

BLAST of MELO3C022483 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 209.1 bits (531), Expect = 9.2e-54
Identity = 125/375 (33.33%), Postives = 226/375 (60.27%), Query Frame = 0


Query: 206 SKELELLQDELSESITVKSKRQTERKARRTR-AAEKTVTSVVPFKSGSSSRKKRSSLQEV 265
           S   EL+    ++ + V S+R+ ++KARR+   AE    S +P       R   +++   
Sbjct: 204 SDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAENGDQSSLPI----GLRTTWNNIDVP 263

Query: 266 DYSDPLRYLRATTSTSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAA 325
               P +Y +     SR      E E+S G++ +  +ER++ +L E  G   + + WAAA
Sbjct: 264 RVRRPPKYRKKRERISR-----NETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAA 323

Query: 326 AGVNQRTLRKRLNYGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAE 385
           AG+N++ L + L+YG  C+D+++KS   LV+ +A+NY+G G+  +DL+Q G  G+++GAE
Sbjct: 324 AGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAE 383

Query: 386 KFDASKGFKFSTYAHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENG-R 445
           +FD ++G+KFSTY  +WI++++   +S  +R + +P  ++     +++ARK L + +G +
Sbjct: 384 RFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIK 443

Query: 446 HPDDKEIAEAAGLSMKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLI 505
           +  D+EIA+  G S+K++ A     K   S+++K+G     K  E   D   E+ E+ ++
Sbjct: 444 YAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVM 503

Query: 506 KQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFR 565
           +Q  ++D+  +L+ L PREKQV+  R+G++D R K+L+EIG+++ VS+E IR+IE  A  
Sbjct: 504 RQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMA 563

Query: 566 KLKNKKRTKHLQQYL 579
           KL+++   + L+ YL
Sbjct: 564 KLRDQPNAEDLRYYL 569

[Close]

BLAST of MELO3C022483 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 183.3 bits (464), Expect = 5.4e-46
Identity = 109/303 (35.97%), Postives = 174/303 (57.43%), Query Frame = 0


Query: 278 STSRLLTATEELELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLN 337
           S S  L+  EE++L   +++  KLE L   + E   NE      A+  G  +R+  + L 
Sbjct: 118 SRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEE---NEMVSVLLASGRGKKKRSANEILC 177

Query: 338 YGTLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTY 397
                ++K+ +   RLV+SIA  YQG G+NLQDL+QEG  GL+RGAE+FD  +G+K STY
Sbjct: 178 RRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTY 237

Query: 398 AHWWIKQAVRKFLSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLS 457
            +WWIKQA+ + ++ +SR ++LP  M E T +V EA   L  +  R P  +EIAE   L+
Sbjct: 238 VYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLN 297

Query: 458 MKRLAAVLMTPKAPRSLEQKIGINQNLKPSEVISDPEAETAEDMLIKQFMKQDLEKVLDS 517
           +  +   +   ++P SL++    N  +   E++  P+    E+M+ ++ MK ++E++L S
Sbjct: 298 VSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLGS 357

Query: 518 LNPREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQY 577
           L  RE +V+   FG+      + +EIG+ + +SRER+RQI   A +KL+N      L+ Y
Sbjct: 358 LTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLRNVHNVNDLKIY 417

Query: 578 LMS 581
             S
Sbjct: 418 YSS 417

[Close]

BLAST of MELO3C022483 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 156.8 bits (395), Expect = 5.4e-38
Identity = 119/360 (33.06%), Postives = 192/360 (53.33%), Query Frame = 0


Query: 231 KARRTRAAEKT-VTSVVPFKSGSSSRKKRSSLQEVDYSDPLRYLRATTSTSRLLTATEEL 290
           + RR  A +KT +T V      SS ++ R  ++ V   D             +L+  E +
Sbjct: 160 RQRRIGAKKKTNMTHVKAVSDVSSGKQVRGYVKGVISED-------------VLSHVEVV 219

Query: 291 ELSEGIQDLLKLERLQEELAERYGNEPTFAQWAAAAGVNQRTLRKRLNYGTLCKDKMIKS 350
            LS+ I+  L+L+  +  L +R G EP+  Q A +  +++  L+  L    L ++K+  S
Sbjct: 220 RLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMS 279

Query: 351 NIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKF 410
           N+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD+SKGF+ STY +WWI+Q V + 
Sbjct: 280 NVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRA 339

Query: 411 LSDQSRTIRLPFHMVEATYRVKEARKQLLSENGRHPDDKEIAEAAGLSMKRLAAVLMTPK 470
           L D SRT+RLP H+ E    ++ A K  L E G  P    IAE+  +S K++        
Sbjct: 340 LVDNSRTLRLPTHLHERLGLIRNA-KLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVS 399

Query: 471 APRSLEQKIGINQNLKPSEV----ISDPEAET-----AEDMLIKQFMKQDLEKVLD-SLN 530
              SL++    + N  P E     I+D   E       +D+     +K+++ K++  +L 
Sbjct: 400 KVFSLDRDAFPSLNGLPGETHHSYIADTRLENNPWHGYDDLA----LKEEVSKLISATLG 459

Query: 531 PREKQVIRWRFGMEDGRMKTLQEIGEIMGVSRERIRQIESCAFRKLKNKKRTKHLQQYLM 580
            REK++IR  +G+ D    T ++I + +G+SRER+RQ+   A  KLK+  R + ++  ++
Sbjct: 460 EREKEIIRLYYGL-DKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKRKMEAMIL 500

The following BLAST results are available for this feature:

BLAST of MELO3C022483 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22056	8.4e-185	62.79	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
P26683	1.1e-75	46.39	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	5.1e-73	42.15	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P52322	1.9e-64	37.41	RNA polymerase sigma factor SigA OS=Microcystis aeruginosa OX=1126 GN=sigA PE=3 ...	[more]
Q9LD95	1.6e-63	39.04	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MELO3C022483 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460092.1	0.0e+00	100.00	PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Cucumis melo]	[more]
XP_004154029.1	1.3e-307	97.07	RNA polymerase sigma factor sigB [Cucumis sativus] >KGN46260.1 hypothetical prot...	[more]
XP_008460093.1	7.3e-303	97.07	PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Cucumis melo]	[more]
KAA0039984.1	1.2e-297	99.64	RNA polymerase sigma factor sigB isoform X1 [Cucumis melo var. makuwa] >TYK24518...	[more]
XP_038875580.1	2.0e-297	94.49	RNA polymerase sigma factor sigB isoform X1 [Benincasa hispida]	[more]

BLAST of MELO3C022483 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CD00	0.0e+00	100.00	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A0A0K917	6.2e-308	97.07	RNA polymerase sigma factor OS=Cucumis sativus OX=3659 GN=Csa_6G078550 PE=3 SV=1	[more]
A0A1S3CBA5	3.5e-303	97.07	RNA polymerase sigma factor OS=Cucumis melo OX=3656 GN=LOC103499006 PE=3 SV=1	[more]
A0A5A7T955	5.8e-298	99.64	RNA polymerase sigma factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1DSR7	1.0e-278	88.59	RNA polymerase sigma factor OS=Momordica charantia OX=3673 GN=LOC111022820 PE=3 ...	[more]

BLAST of MELO3C022483 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08540.1	5.9e-186	62.79	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	1.2e-64	39.04	RNApolymerase sigma-subunit F	[more]
AT3G53920.1	9.2e-54	33.33	RNApolymerase sigma-subunit C	[more]
AT5G13730.1	5.4e-46	35.97	sigma factor 4	[more]
AT1G64860.1	5.4e-38	33.06	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 370..383 score: 52.4 coord: 539..554 score: 54.92 coord: 554..565 score: 59.57 coord: 518..530 score: 48.64 coord: 394..402 score: 82.44
IPR000943	RNA polymerase sigma-70	PROSITE	PS00716	SIGMA70_2	coord: 539..565
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 425..501 e-value: 2.9E-16 score: 59.3
IPR009042	RNA polymerase sigma-70 region 1.2	PFAM	PF00140	Sigma70_r1_2	coord: 268..300 e-value: 7.7E-5 score: 22.6
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 183..418 e-value: 1.7E-38 score: 135.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..206
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..238
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 39..579
None	No IPR available	PANTHER	PTHR30603:SF57	RNA POLYMERASE SIGMA FACTOR SIGB	coord: 39..579
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 508..566 e-value: 2.34772E-14 score: 65.5886
IPR016262	RNA polymerase sigma factor, SigB/C/D/F, plastid	PIRSF	PIRSF000767	Sigma_factor_SigC	coord: 1..580 e-value: 3.6E-186 score: 618.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 419..496 e-value: 2.7E-14 score: 55.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 501..580 e-value: 3.4E-28 score: 99.1
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 344..568 e-value: 5.2E-33 score: 112.0
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 514..566 e-value: 4.6E-20 score: 70.9
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 346..415 e-value: 9.7E-19 score: 66.9
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 267..416
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 414..465
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 478..577

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022483.1	MELO3C022483.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0016987	sigma factor activity