MELO3C022182 (gene) Melon (DHL92) v4

Overview
NameMELO3C022182
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr09: 428699 .. 428971 (-)
RNA-Seq ExpressionMELO3C022182
SyntenyMELO3C022182
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCAGAAAATCGATATTCCTATCAATACATCATGTTGTTTCTGTATCTATATATGTGTTTCTCTATTTCCACTACAAGAAGTGAGGAGATTCTCGATGCACAAAAACGTCGATGGAAGTGGAAAAGACGTCGGGAAATCAATTTCCGACATAGAAGGGAACGTCGAAAAGACCGTCGGAAGAAACGCATTGGGAGACCTTTTCCCGACGCGTCACCAACAAAGCATTGGGAATAACCTTCTCTCGACGTTTTCTTCACCAACAAAGTAA

mRNA sequence

ATGAGGCAGAAAATCGATATTCCTATCAATACATCATGTTGTTTCTGTATCTATATATGTGTTTCTCTATTTCCACTACAAGAAGTGAGGAGATTCTCGATGCACAAAAACGTCGATGGAAGTGGAAAAGACGTCGGGAAATCAATTTCCGACATAGAAGGGAACGTCGAAAAGACCGTCGGAAGAAACGCATTGGGAGACCTTTTCCCGACGCGTCACCAACAAAGCATTGGGAATAACCTTCTCTCGACGTTTTCTTCACCAACAAAGTAA

Coding sequence (CDS)

ATGAGGCAGAAAATCGATATTCCTATCAATACATCATGTTGTTTCTGTATCTATATATGTGTTTCTCTATTTCCACTACAAGAAGTGAGGAGATTCTCGATGCACAAAAACGTCGATGGAAGTGGAAAAGACGTCGGGAAATCAATTTCCGACATAGAAGGGAACGTCGAAAAGACCGTCGGAAGAAACGCATTGGGAGACCTTTTCCCGACGCGTCACCAACAAAGCATTGGGAATAACCTTCTCTCGACGTTTTCTTCACCAACAAAGTAA

Protein sequence

MRQKIDIPINTSCCFCIYICVSLFPLQEVRRFSMHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFSSPTK
Homology
[Close]
BLAST of MELO3C022182 vs. NCBI nr
Match: KAA0039107.1 (hypothetical protein E6C27_scaffold84G002100 [Cucumis melo var. makuwa] >TYK25976.1 hypothetical protein E5676_scaffold1441G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 34 MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFS 87
          MHKNV  SGKD+GK I ++E  + K VGRN LG+ FP  HQQ IGNNLL T S
Sbjct: 1  MHKNVSESGKDIGKGIPNVESYIIKVVGRNVLGERFPMPHQQGIGNNLLPTSS 53

[Close]
BLAST of MELO3C022182 vs. NCBI nr
Match: KAA0038928.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 35/63 (55.56%), Postives = 38/63 (60.32%), Query Frame = 0 

Query: 26  LQEVRRFSMHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTF 85
           LQEV R  MHK VD SGKDVG  I D E +V  T+ RN   D FPT HQQ + N  L T 
Sbjct: 164 LQEVGRLLMHKYVDESGKDVGNQILDAERDVRTTIERNTSRDRFPTCHQQGVENTFLPTS 223

Query: 86  SSP 89
           S P
Sbjct: 224 SLP 226

[Close]
BLAST of MELO3C022182 vs. ExPASy TrEMBL
Match: A0A5A7TBZ3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1441G00370 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-09
Identity = 33/53 (62.26%), Postives = 38/53 (71.70%), Query Frame = 0 

Query: 34 MHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTFS 87
          MHKNV  SGKD+GK I ++E  + K VGRN LG+ FP  HQQ IGNNLL T S
Sbjct: 1  MHKNVSESGKDIGKGIPNVESYIIKVVGRNVLGERFPMPHQQGIGNNLLPTSS 53

[Close]
BLAST of MELO3C022182 vs. ExPASy TrEMBL
Match: A0A5A7T7S7 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2967G00080 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.8e-08
Identity = 35/63 (55.56%), Postives = 38/63 (60.32%), Query Frame = 0 

Query: 26  LQEVRRFSMHKNVDGSGKDVGKSISDIEGNVEKTVGRNALGDLFPTRHQQSIGNNLLSTF 85
           LQEV R  MHK VD SGKDVG  I D E +V  T+ RN   D FPT HQQ + N  L T 
Sbjct: 164 LQEVGRLLMHKYVDESGKDVGNQILDAERDVRTTIERNTSRDRFPTCHQQGVENTFLPTS 223

Query: 86  SSP 89
           S P
Sbjct: 224 SLP 226

The following BLAST results are available for this feature:
BLAST of MELO3C022182 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0039107.11.1e-0862.26hypothetical protein E6C27_scaffold84G002100 [Cucumis melo var. makuwa] >TYK2597... [more]
KAA0038928.11.6e-0755.56retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
BLAST of MELO3C022182 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C022182 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TBZ35.4e-0962.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T7S77.8e-0855.56Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw... [more]
BLAST of MELO3C022182 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C022182.1MELO3C022182.1mRNA