MELO3C021993.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C021993.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr09: 2181719 .. 2182467 (-)
RNA-Seq ExpressionMELO3C021993.jh1
SyntenyMELO3C021993.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGCCTTTTCCATAATTTCCTTTTCCTTTCCTTGATAACTTCAAAACCCTCTCTCTCTCTCTGTCTCAAAGTAACAAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTTTTTCTTTCACTCATGGTACTCATATGTCTTCTATTTATTTTCTAATTATCCTTTTTTCATGTATGTTTTTCTACATTTTGATCATCCTCAGCTCATATTGTATATCTTTTACTCTGTTTCTATCTCAAGGATTGAAAGTGGAAATGATCGAATCTTTGGGACATGGAAGCAATGTTAGAAGTTCATCACTCAAGGTGTGATTTATTTTGTTTTGAAATAATCAATAAAAGGGTATGTTTTTGTTTTAAAATTTTGGAATAATTAGTATTTAATTATATATTGTGTTAATTTTTGGCAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATAATAATACAAGATCAAGTGGGTATCTTCCTCCTCCTCCTCCACCAGCTGCTTAATTAATTTGTAACAGTTTTTTTTCTCTTTTTTTGTCCAATAAAAGACCACAGCTTATAATAATATTATTAATTTCTGTGTGGTTTTTCATTTTCTAAGAACTTATTATCCTTCCAAGTGTAATTCATGCATGGTGTTGAAGAGATAAATTGGAGGTTTTGTTGTCTTTTACT

mRNA sequence

GAGGCCTTTTCCATAATTTCCTTTTCCTTTCCTTGATAACTTCAAAACCCTCTCTCTCTCTCTGTCTCAAAGTAACAAAAAAAGTTTGGTAGAGAGAGAAAGATTATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTTTTTCTTTCACTCATGGATTGAAAGTGGAAATGATCGAATCTTTGGGACATGGAAGCAATGTTAGAAGTTCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATAATAATACAAGATCAAGTGGGTATCTTCCTCCTCCTCCTCCACCAGCTGCTTAATTAATTTGTAACAGTTTTTTTTCTCTTTTTTTGTCCAATAAAAGACCACAGCTTATAATAATATTATTAATTTCTGTGTGGTTTTTCATTTTCTAAGAACTTATTATCCTTCCAAGTGTAATTCATGCATGGTGTTGAAGAGATAAATTGGAGGTTTTGTTGTCTTTTACT

Coding sequence (CDS)

ATGGTTCACCCTAAACTTTTCTCAACTCTTCTTCTCCTTTCATGTTTTCTTCTTTTTTCTTTCACTCATGGATTGAAAGTGGAAATGATCGAATCTTTGGGACATGGAAGCAATGTTAGAAGTTCATCACTCAAGGGAATTGGTGGAAAATCAAGAAAAATGATGATTGAAATAATGGATTATGCAGATCCAGGGCCAAATAATAATACAAGATCAAGTGGGTATCTTCCTCCTCCTCCTCCACCAGCTGCTTAA

Protein sequence

MVHPKLFSTLLLLSCFLLFSFTHGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA
Homology
BLAST of MELO3C021993.jh1 vs. NCBI nr
Match: KGN52468.1 (hypothetical protein Csa_007886 [Cucumis sativus])

HSP 1 Score: 143 bits (360), Expect = 1.84e-42
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 1  MVHPKLFSTLLLLSCFLLFSFTHGLKVEMIESLGHGSNVR-SSSLKGIGGKSRKMMIEIM 60
          MVHPKLFSTLLLLSCFLL SFTHGLKVEMIESLGHGSNVR S SLKGIGGKSRKMMIEIM
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNNNTRSSGYLPPPPPPA 83
          DYADPGPN NTRS GYL PPPPP+
Sbjct: 61 DYADPGPNTNTRS-GYLNPPPPPS 83

BLAST of MELO3C021993.jh1 vs. NCBI nr
Match: KAA0039487.1 (hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK15242.1 hypothetical protein E5676_scaffold892G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (286), Expect = 1.56e-31
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 29 MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 84
          MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA
Sbjct: 1  MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 56

BLAST of MELO3C021993.jh1 vs. NCBI nr
Match: KAG6602500.1 (hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033174.1 hypothetical protein SDJN02_07228 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 71.2 bits (173), Expect = 4.93e-14
Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 1  MVHPKLFSTLLLLSCFLLFSFTHGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMD 60
          M HPK+F  LLLL   L      G  V  +E+  H     SSS K  GGK RK+M+E+MD
Sbjct: 1  MDHPKIFPILLLLFIIL------GFGVGAMEAAAHPGYDTSSSQKKSGGKPRKVMMEVMD 60

Query: 61 YADPGPNNNTRSSGYLPPP 79
          YADPGPN NTRS GYL PP
Sbjct: 61 YADPGPNTNTRS-GYLTPP 72

BLAST of MELO3C021993.jh1 vs. NCBI nr
Match: XP_023527249.1 (uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.9 bits (167), Expect = 3.82e-13
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 4  PKLFSTLLLLSCFLLFSFTHGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYAD 63
          PK+F  LLLL  F++F F  G     +E+  H     SSS K  GGK RK+M+E+MDYAD
Sbjct: 2  PKIFPILLLL--FIIFGFGVG----AMEAAAHAGCDISSSQKKSGGKPRKVMMEVMDYAD 61

Query: 64 PGPNNNTRSSGYL-----PPPPP 81
          PGPN NTRS GYL     PPPPP
Sbjct: 62 PGPNTNTRS-GYLTPPSSPPPPP 77

BLAST of MELO3C021993.jh1 vs. NCBI nr
Match: XP_023527257.1 (uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 6.11e-12
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 0

Query: 4  PKLFSTLLLLSCFLLFSFTHGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYAD 63
          PK+F  LLLL  F++F F  G     +E+  H     SSS K  GGK RK+M+E+MDYAD
Sbjct: 2  PKIFPILLLL--FIIFGFGVG----AMEAAAHAGCDISSSQKS-GGKPRKVMMEVMDYAD 61

Query: 64 PGPNNNTRSSGYL-----PPPPP 81
          PGPN NTRS GYL     PPPPP
Sbjct: 62 PGPNTNTRS-GYLTPPSSPPPPP 76

BLAST of MELO3C021993.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 143 bits (360), Expect = 8.89e-43
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 1  MVHPKLFSTLLLLSCFLLFSFTHGLKVEMIESLGHGSNVR-SSSLKGIGGKSRKMMIEIM 60
          MVHPKLFSTLLLLSCFLL SFTHGLKVEMIESLGHGSNVR S SLKGIGGKSRKMMIEIM
Sbjct: 1  MVHPKLFSTLLLLSCFLLLSFTHGLKVEMIESLGHGSNVRISPSLKGIGGKSRKMMIEIM 60

Query: 61 DYADPGPNNNTRSSGYLPPPPPPA 83
          DYADPGPN NTRS GYL PPPPP+
Sbjct: 61 DYADPGPNTNTRS-GYLNPPPPPS 83

BLAST of MELO3C021993.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00160 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 7.54e-32
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 29 MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 84
          MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA
Sbjct: 1  MIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGPNNNTRSSGYLPPPPPPAA 56

BLAST of MELO3C021993.jh1 vs. ExPASy TrEMBL
Match: A0A498HG62 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.25e-07
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 7  FSTLLLLSCFLLFSFTHGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGP 66
          F   L++SC L   F+HG   +++E+  HG +      +   GKSRKM I +MDYADP P
Sbjct: 6  FLRFLIVSCLLALCFSHGFGRKLVETAEHGEDSSVLVSRENHGKSRKM-ITMMDYADPEP 65

Query: 67 NNNTRSSGYLPPPPP 81
          N N R+ GY+  PPP
Sbjct: 66 NVNPRT-GYIFTPPP 78

BLAST of MELO3C021993.jh1 vs. ExPASy TrEMBL
Match: A0A540L840 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031846 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.51e-07
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 7  FSTLLLLSCFLLFSFTHGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGP 66
          F   L++SC L   F+HGL  +++E+  HG +      +   GKSRKM   +MDYADP P
Sbjct: 6  FLRFLIVSCLLALCFSHGLGRKLVETAEHGDDSSVLVSRENHGKSRKMNT-MMDYADPEP 65

Query: 67 NNNTRSSGYLPPPPP 81
          N N R+ GY+  PPP
Sbjct: 66 NVNPRT-GYIFTPPP 78

BLAST of MELO3C021993.jh1 vs. ExPASy TrEMBL
Match: A0A2N9EQS6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5074 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.64e-07
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 7  FSTLLLLSCFLLFSFTHGLKVEMIESLGHGSNVRSSSLKGIGGKSRKMMIEIMDYADPGP 66
          F  +LL+S  L+  F+HG   +++E++    N      + IG KSR++ IE+MDY+DPGP
Sbjct: 6  FLRILLVSSLLVLFFSHGFGRKVMETVEDEDNSTVQGEEAIG-KSREL-IEVMDYSDPGP 65

Query: 67 NNNTRSSGYLPPPP 80
          N N R+   L PPP
Sbjct: 66 NTNPRTGYILSPPP 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN52468.11.84e-4291.67hypothetical protein Csa_007886 [Cucumis sativus][more]
KAA0039487.11.56e-31100.00hypothetical protein E6C27_scaffold64G003070 [Cucumis melo var. makuwa] >TYK1524... [more]
KAG6602500.14.93e-1454.43hypothetical protein SDJN03_07733, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023527249.13.82e-1354.22uncharacterized protein LOC111790540 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023527257.16.11e-1254.22uncharacterized protein LOC111790540 isoform X2 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KSB78.89e-4391.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1[more]
A0A5D3CUT57.54e-32100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A498HG622.25e-0744.00Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_037098 PE=4 SV=1[more]
A0A540L8404.51e-0744.00Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_031846 PE=4 SV=1[more]
A0A2N9EQS68.64e-0741.89Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5074 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..84
NoneNo IPR availablePANTHERPTHR37908TRANSMEMBRANE PROTEINcoord: 5..82
NoneNo IPR availablePANTHERPTHR37908:SF3TRANSMEMBRANE PROTEINcoord: 5..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021993.jh1.t1MELO3C021993.jh1.t1mRNA