MELO3C021826 (gene) Melon (DHL92) v4

Overview
NameMELO3C021826
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTy3-gypsy retrotransposon protein
Locationchr11: 6812821 .. 6812970 (-)
RNA-Seq ExpressionMELO3C021826
SyntenyMELO3C021826
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGAAGGTGGAAGAAAGGTTCGAGGCAGTAGAACAAGATATTTCTAGCATCCGAGCAGAACTTCCAAAGTTACCTGCAATAGAAGAGAACCTATCCTCAGTGGCAAAGAACATTGAGCGACTGAGCATCCAAAACGAAAAATAG

mRNA sequence

ATGGCGAAGAAGGTGGAAGAAAGGTTCGAGGCAGTAGAACAAGATATTTCTAGCATCCGAGCAGAACTTCCAAAGTTACCTGCAATAGAAGAGAACCTATCCTCAGTGGCAAAGAACATTGAGCGACTGAGCATCCAAAACGAAAAATAG

Coding sequence (CDS)

ATGGCGAAGAAGGTGGAAGAAAGGTTCGAGGCAGTAGAACAAGATATTTCTAGCATCCGAGCAGAACTTCCAAAGTTACCTGCAATAGAAGAGAACCTATCCTCAGTGGCAAAGAACATTGAGCGACTGAGCATCCAAAACGAAAAATAG

Protein sequence

MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK
Homology
BLAST of MELO3C021826 vs. NCBI nr
Match: KAA0039162.1 (hypothetical protein E6C27_scaffold121G00640 [Cucumis melo var. makuwa] >TYK26950.1 hypothetical protein E5676_scaffold322G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 8.7e-08
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVA--KNIERLSIQNEK 50
          M KK EERFEA++Q+IS IRAEL KLPA+EE LSS+A  KNIE+LSIQ+EK
Sbjct: 9  MTKKKEERFEAIDQEISGIRAELQKLPAVEEKLSSLAMVKNIEQLSIQSEK 59

BLAST of MELO3C021826 vs. NCBI nr
Match: KAA0043341.1 (putative ribose-5-phosphate isomerase 4 [Cucumis melo var. makuwa] >TYK02671.1 putative ribose-5-phosphate isomerase 4 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1   MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
           MAKK EERFE++EQ++S ++ +L KLP +EE LS++ KNIERL++QNEK
Sbjct: 142 MAKKYEERFESLEQEVSEMKVDLQKLPVMEEKLSTIMKNIERLNVQNEK 190

BLAST of MELO3C021826 vs. NCBI nr
Match: KAA0036991.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          MAKK EERFEA+EQ++S ++ +L KLPA+EE LS++ K IERL++QNEK
Sbjct: 1  MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERLNVQNEK 49

BLAST of MELO3C021826 vs. NCBI nr
Match: TYK17139.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-07
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          MAKK EERFEA+EQ++S ++ +L KLPA+EE LS++ K IERL++QNEK
Sbjct: 1  MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKMIERLNVQNEK 49

BLAST of MELO3C021826 vs. NCBI nr
Match: KAA0054161.1 (uncharacterized protein E6C27_scaffold131G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 3  KKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          K++EE+ EA +QDIS IR EL KLP IEENLSS AK+IERL IQ EK
Sbjct: 4  KRIEEKLEAFDQDISEIRVELHKLPTIEENLSSTAKSIERLGIQAEK 50

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5A7T6Q0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00090 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-08
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0

Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVA--KNIERLSIQNEK 50
          M KK EERFEA++Q+IS IRAEL KLPA+EE LSS+A  KNIE+LSIQ+EK
Sbjct: 9  MTKKKEERFEAIDQEISGIRAELQKLPAVEEKLSSLAMVKNIEQLSIQSEK 59

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5A7T5W7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00210 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          MAKK EERFEA+EQ++S ++ +L KLPA+EE LS++ K IERL++QNEK
Sbjct: 1  MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERLNVQNEK 49

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5D3BSE7 (Putative ribose-5-phosphate isomerase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00180 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1   MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
           MAKK EERFE++EQ++S ++ +L KLP +EE LS++ KNIERL++QNEK
Sbjct: 142 MAKKYEERFESLEQEVSEMKVDLQKLPVMEEKLSTIMKNIERLNVQNEK 190

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5D3D379 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00780 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 0

Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          MAKK EERFEA+EQ++S ++ +L KLPA+EE LS++ K IERL++QNEK
Sbjct: 1  MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKMIERLNVQNEK 49

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5A7UKU8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00900 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 3  KKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          K++EE+ EA +QDIS IR EL KLP IEENLSS AK+IERL IQ EK
Sbjct: 4  KRIEEKLEAFDQDISEIRVELHKLPTIEENLSSTAKSIERLGIQAEK 50

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0039162.18.7e-0872.55hypothetical protein E6C27_scaffold121G00640 [Cucumis melo var. makuwa] >TYK2695... [more]
KAA0043341.13.3e-0761.22putative ribose-5-phosphate isomerase 4 [Cucumis melo var. makuwa] >TYK02671.1 p... [more]
KAA0036991.13.3e-0763.27ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gyp... [more]
TYK17139.15.7e-0763.27putative retroelement pol polyprotein [Cucumis melo var. makuwa][more]
KAA0054161.11.3e-0670.21uncharacterized protein E6C27_scaffold131G00900 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7T6Q04.2e-0872.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T5W71.6e-0763.27Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BSE71.6e-0761.22Putative ribose-5-phosphate isomerase 4 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3D3792.7e-0763.27Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7UKU86.1e-0770.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 2..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021826.1MELO3C021826.1mRNA