MELO3C021769 (gene) Melon (DHL92) v4

Overview
NameMELO3C021769
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionribonuclease H2 subunit C
Locationchr12: 16697776 .. 16701275 (-)
RNA-Seq ExpressionMELO3C021769
SyntenyMELO3C021769
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAATCCCAAAAGCCGAAAGGATAAAATGGTAAAGAAGAAGAAGAAAAAAAAAAAAAAAAAACCAATTTGGAGCGGGAAAGTGTTGGTCGACGATCGATTCTCATTTCTCAGTGTTCAAAAGAGCGGGAAACATAGAATCTGAATGACAATACAAACGGTCGATTGAATTTCCTTCTCAGAAATCCCAAGCACCAACGTCGGTTTGTTTAGGGTTTTTCACTTTTAGATTTGCTTTACAATCAATCAAATGAATGCTCAAAACGGGAGGAAAGGGGAAGCAACCGTCGATTTTGATTTTGATTTTGGGAGTGACCCTAAAGCTTTAGATCTCAGTGGTAAAATCCATCAGCTTCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGTAATGCCCTAATTTTCGCCGTTTCTTCTACTCCACTTTATATATTTAGCGTACTTTTTTTGTTCTTTACTCAGTAGTTTCTTGCCTATTATAGGAATTGAGGTTGATGGTTTGAATGTCGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCAGGTAATATGAAATTACTTTCAGCTTTCACTTCATTGAAAATTCTATCTTCTTTGTTGATATTACTCACTTGTATTTTGTATCGTTCATTACTTCAATCACTTAATCACCTATCTATTGCTTACATAAATTATTGGTTTCAGTTTTCTATATTCTTTGGCATGATATTACTTTATAATATTAAAAAGAGTTTTCTACCTTAATTTCTTACAAAATGGAAACAATAAGAAACAAAGAAGATGTTATTGTTAACTGATTAAATCATGAACTTGAAGTTTCCATATTAGTTGAGTTTCTGTCTTTTAAAGATATATTTTGGGCTAGCTATGAACATTTCTATTATTGAAAAGTGTTATTACTGTGATAATTGGTTTTTCTAGTTTTGTTGGATGTCTTAGTTGGAAATTGGGATTGAATATTTTTATCTTAAAATAGAATGTTTCTGCTCTCTATGTAGAACGGTGATTACATATTCATAGGGTCACAGGGTTTTGTCTTTTCTTAAACAAGGCTTTTCCATCAAACCAATAGAGTAGAGCTCATCAAAAGCTTGCTGACAGTTTAGTTTTTGATATGAAATTTATTCCAATTCCAGGCATAACCAAAATTTACTTAAAATTGTGTATTTTTTCATTTATCTGTTTTATTTCATGTGTTGTTGTCTAAAAGAAAAGTAGTTTCAAAACCCACTTCAATTGGCTAAGGCGATTCTTGTAAGTATTCAAATAAGTAGAGATTGAATATTATGGTACTGGTTGTTCTTGTTCTCTGTCTATCTGCAACTGTTTCTCATGTGGGTTGAATGGGATTCACTGAGACAATTGGTGAAGAGCTTTCCTACAATTCTTAGCCTATTTTATGGTTGATGTTCTTATTTCACTTGTAATATGCCTGGATATTTTGAAAGAATTTCAACATGCATTCTGAATATGTTTTGTGAATAAAAAACGCTAGGGTGGTACACTGGTTGAAGATAAACAGAGTATTTCAACTGTAAATAGTCTATGAATAAGAAATCTTTATTTGTTTCTTGTTCTTTATTACTAATATCATTATTTAAATTTTTTTTTTACTGCTCCATGTCTACTTTCTGCTTATGGGATTGTCAACAGCGTAGGGCCTAGTCATTTCATGAGTACATGCACAATAGCTCCTTCCGGGTTTTTTTTTTTTTTTTTTTTTTTTGATAATGGTTACTTGCATAAACTTCAGTTGGTGATCTCTTTAACTAAAGATCGACACATACATGCCACATGGGCAAGTTCCCTGCTCCCATTCTTGGTTTATATTTATGAAAAATTTGAAGAAGAATGCATGCAAATAAGTTACTTGAACCTTCTTGTTTACTGTAAATAAGATATGTTTGTTTTCTTGTTGGGAGATTAAAGATTTGCTATGAAAAAAACCATCGGTTATTTTGATGATTCTAGAAAAAGGAAATGAGAAGGAATAAGCTATTCATTTTCCTGTTTCGTTTAGTTTTTAGGCTGCTATATAAGAGCAGTTTTCTAACTATCCCTTTTTGTTTTGTAAATCTAGCCAATCGGAAAGTGTATATATATATATATATATTAAGGGCCTTGTTTGAATGGACATGAGGATATCAGATCTCCAATCCTTCTTAGAGTAAATGTAAATGCTTTCTGTTAAAAAAAATGCTCTGTTTCCACCTTTTCTATCTAATTTGAACTTTTGCACTAAGGCATCCAGAACTAATATTGACATAAATTTGTTCCACACTTCATTTAACCAATTTGAACTAAAGGATCTATGTTTTTCTGTAAATGTTGTTCTTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGTAAATCTTCGGATCAGTGTGATGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACGTTCCAACGTACTTTCCACTGGCTGACCGTTGCACAAGCAGTATGATTCTGATCAACACACATCAAAATAATTAACAATATCATGTCTTGTTTGCATTTTTCTATATCCAAGTACTAAAACTGCTATGAGGTTTGAGAATAGTTTCATACAAGCTTTAAATTAACTACTACGAGATGGAAAAAGTGGAGGGTTTCTTTTAATTAAATATATTAGGTTTGTTATGTAACTCCAGAGTTTGTGCATCCTCCTCTCCAATTTTGGCCTAATATGAAATAAGATTTATATTAAAATCTTATAACTTCTTGGGCTATTGACCATTAGTTAAAATCTAATATAATAAAATCTAATATGTTAAAGTATATACTAACATTCCTAAAGAATTGTAAATATAATAAAATCTATTACCAATAGACTTCTACTACTAATATCCAATAATAGACTCTTATTAATAATATTAGTTTATCAATGATAGATTTTGAGAATCGAATTTAATTTGACATGTCAATTCTTTTAGATTATGTTATATTTACAAATTCTTTGGATCTGATTGCTATATTTGCAACTTGTTTCGTAAATTTATTTTCCCAAGTTTCTTACCTCATGGACTTTTGTTTATGGTTGCAGTTGCACAAACCTGTAACAGCAGAAGATTTGGCATCTGCATCTGCTGCTCTCAACAACTTGAGTTGATTAGGTTTAGGATCACAATGTGTTCTGAGAAGAAAACTTCAATAGACTTAGAATGGTTCCATTCTACTTCGATTTGTATTTGGTCATATTATTATCTACCTTACCAATTTATTCAATGGGTTTGGCTTGGCATTTTAAACCATGATGTCACCCAAAGACTTTTTTTTTTTTTTTTTTTCAATTTCATACTGTTGTAGTAATACTATAAACATGATTTACATTGGAAGTCTTTCCCGTCCCTATGACCTATCAAAGGTCGAAACTTTTTTCT

mRNA sequence

CAAATCCCAAAAGCCGAAAGGATAAAATGGTAAAGAAGAAGAAGAAAAAAAAAAAAAAAAAACCAATTTGGAGCGGGAAAGTGTTGGTCGACGATCGATTCTCATTTCTCAGTGTTCAAAAGAGCGGGAAACATAGAATCTGAATGACAATACAAACGGTCGATTGAATTTCCTTCTCAGAAATCCCAAGCACCAACGTCGGTTTGTTTAGGGTTTTTCACTTTTAGATTTGCTTTACAATCAATCAAATGAATGCTCAAAACGGGAGGAAAGGGGAAGCAACCGTCGATTTTGATTTTGATTTTGGGAGTGACCCTAAAGCTTTAGATCTCAGTGGTAAAATCCATCAGCTTCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTCGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGTAAATCTTCGGATCAGTGTGATGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACGTTCCAACGTACTTTCCACTGGCTGACCGTTGCACAAGCATTGCACAAACCTGTAACAGCAGAAGATTTGGCATCTGCATCTGCTGCTCTCAACAACTTGAGTTGATTAGGTTTAGGATCACAATGTGTTCTGAGAAGAAAACTTCAATAGACTTAGAATGGTTCCATTCTACTTCGATTTGTATTTGGTCATATTATTATCTACCTTACCAATTTATTCAATGGGTTTGGCTTGGCATTTTAAACCATGATGTCACCCAAAGACTTTTTTTTTTTTTTTTTTTCAATTTCATACTGTTGTAGTAATACTATAAACATGATTTACATTGGAAGTCTTTCCCGTCCCTATGACCTATCAAAGGTCGAAACTTTTTTCT

Coding sequence (CDS)

ATGAATGCTCAAAACGGGAGGAAAGGGGAAGCAACCGTCGATTTTGATTTTGATTTTGGGAGTGACCCTAAAGCTTTAGATCTCAGTGGTAAAATCCATCAGCTTCCCTGTACCATCAAATTCGATGGTCCTTGCCCTGTTTCTCATTATTTTAAACCCAAATCCACTGGAATTGAGGTTGATGGTTTGAATGTCGAGGAAGCTTATTTTAGAGGAAGAAAGTTGCAAGGAGCTACCATTTCCCTTCCGGAGGGTTACTCAGGCTATGTGCTAGGGAAGAAGAGTCTTGGAAAGAGTAAATCTTCGGATCAGTGTGATGACTCAAGCCCTTGGCAGGTGAAGGCCAAATTTGATAACATTACATATTGGAACCATGACACCCTGCCGTCACAAGATGATACGTTCCAACGTACTTTCCACTGGCTGACCGTTGCACAAGCATTGCACAAACCTGTAACAGCAGAAGATTTGGCATCTGCATCTGCTGCTCTCAACAACTTGAGTTGA

Protein sequence

MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
Homology
[Close]
BLAST of MELO3C021769 vs. ExPASy Swiss-Prot
Match: Q8TDP1 (Ribonuclease H2 subunit C OS=Homo sapiens OX=9606 GN=RNASEH2C PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-10
Identity = 44/139 (31.65%), Postives = 62/139 (44.60%), Query Frame = 0 

Query: 32  IHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSGYVL 91
           +H LPC +  DGP PV  +F P        G    E  FRGR L+G  +++P G  GYV+
Sbjct: 29  LHLLPCEVAVDGPAPVGRFFTPAIR----QGPEGLEVSFRGRCLRGEEVAVPPGLVGYVM 88

Query: 92  ----GKKSLGK------SKSSDQCDDSSPWQ--------VKAKFDNITYWNHDTLPSQDD 151
                K S+GK      S + DQ  +  P +          A F   T W  +T+P  D 
Sbjct: 89  VTEEKKVSMGKPDPLRDSGTDDQ--EEEPLERDFDRFIGATANFSRFTLWGLETIPGPDA 148

Query: 152 TFQRTFHWLTVAQALHKPV 153
             +    W ++A A+H  V
Sbjct: 149 KVRGALTWPSLAAAIHAQV 161

[Close]
BLAST of MELO3C021769 vs. ExPASy Swiss-Prot
Match: Q10448 (Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC12B10.15c PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 39/118 (33.05%), Postives = 58/118 (49.15%), Query Frame = 0 

Query: 31  KIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRKLQGATISLPEGYSG-Y 90
           K   LPC I +DGP PV  YF  K   I  +  +      RGR+L G  + LPE Y+G  
Sbjct: 20  KASLLPCHISYDGPAPVFEYFHDK-IQISNNTHSKTTVCLRGRELNGEELDLPENYTGQV 79

Query: 91  VLGKKSLGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTL-PSQDDTFQR-TFHWLTVA 146
           VL    L   ++S++    S W + + F+ +  WN D +  S+ D ++R    W+  A
Sbjct: 80  VLCDDGLENDETSEKEIPESTWCINSTFEKVMLWNRDNMRSSEKDQWKRGVLEWIQFA 136

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: XP_008459055.1 (PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo] >KAA0043234.1 ribonuclease H2 subunit C isoform X2 [Cucumis melo var. makuwa] >TYK29298.1 ribonuclease H2 subunit C isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 351.7 bits (901), Expect = 3.6e-93
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: XP_011660323.1 (uncharacterized protein C12B10.15c [Cucumis sativus] >KGN66902.1 hypothetical protein Csa_007140 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 152/168 (90.48%), Postives = 158/168 (94.05%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGLN+EEAYFRGRKLQGATISLPEGYSGYVLGK    KSK+S+QCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSKASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: XP_038893586.1 (uncharacterized protein C12B10.15c [Benincasa hispida])

HSP 1 Score: 291.6 bits (745), Expect = 4.4e-75
Identity = 142/168 (84.52%), Postives = 151/168 (89.88%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MNA+N RKGE  VDFDF+  SD  ALDLSGK+HQLPC IKFDGPC VS YFKPKSTGIE 
Sbjct: 1   MNAENERKGEVIVDFDFE--SDSVALDLSGKVHQLPCAIKFDGPCSVSQYFKPKSTGIEF 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGL+VEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGK K+S+Q  +SSPWQVKAKF NI
Sbjct: 61  DGLSVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKRKASEQDQNSSPWQVKAKFANI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLPSQDDTFQR+FHWLTVAQALHKPVTAEDLASAS AL N+S
Sbjct: 121 TYWNHDTLPSQDDTFQRSFHWLTVAQALHKPVTAEDLASASTALKNMS 166

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: KAG6583796.1 (Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.1 bits (710), Expect = 5.0e-71
Identity = 132/168 (78.57%), Postives = 149/168 (88.69%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           M+++N RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEV
Sbjct: 1   MDSENERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K+S++  DSS WQVKAKF+NI
Sbjct: 61  DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Sbjct: 121 TYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]
BLAST of MELO3C021769 vs. NCBI nr
Match: XP_022927160.1 (uncharacterized protein C12B10.15c [Cucurbita moschata])

HSP 1 Score: 275.8 bits (704), Expect = 2.5e-70
Identity = 131/168 (77.98%), Postives = 148/168 (88.10%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           M+++  RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEV
Sbjct: 1   MDSEKERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K+S++  DSS WQVKAKF+NI
Sbjct: 61  DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Sbjct: 121 TYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]
BLAST of MELO3C021769 vs. ExPASy TrEMBL
Match: A0A5A7TIT8 (Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00020 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.7e-93
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]
BLAST of MELO3C021769 vs. ExPASy TrEMBL
Match: A0A1S3C9A8 (uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.7e-93
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 168

[Close]
BLAST of MELO3C021769 vs. ExPASy TrEMBL
Match: A0A0A0M1A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G708160 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.3e-84
Identity = 152/168 (90.48%), Postives = 158/168 (94.05%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           MN QN RKGE  VDFDFDFG+DPKALD+SGK+HQLPCTIKFDGPCPVSHYFKPKSTGIEV
Sbjct: 1   MNDQNERKGEVIVDFDFDFGTDPKALDISGKVHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGLN+EEAYFRGRKLQGATISLPEGYSGYVLGK    KSK+S+QCDDSSPWQVKAKFDNI
Sbjct: 61  DGLNLEEAYFRGRKLQGATISLPEGYSGYVLGK----KSKASEQCDDSSPWQVKAKFDNI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASAS AL NLS
Sbjct: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASTALKNLS 164

[Close]
BLAST of MELO3C021769 vs. ExPASy TrEMBL
Match: A0A6J1EN41 (uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.2e-70
Identity = 131/168 (77.98%), Postives = 148/168 (88.10%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           M+++  RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEV
Sbjct: 1   MDSEKERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGL+VE AYFRGRKLQGATISLPEGYSGYV+G+KS GK K+S++  DSS WQVKAKF+NI
Sbjct: 61  DGLSVENAYFRGRKLQGATISLPEGYSGYVIGRKSHGKRKASEESQDSSSWQVKAKFENI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA+AS AL N+S
Sbjct: 121 TYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLAAASIALKNMS 166

[Close]
BLAST of MELO3C021769 vs. ExPASy TrEMBL
Match: A0A6J1KH29 (uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.7e-69
Identity = 129/168 (76.79%), Postives = 146/168 (86.90%), Query Frame = 0 

Query: 1   MNAQNGRKGEATVDFDFDFGSDPKALDLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEV 60
           M+++  RK E  V  DFDFGSD  A+DLSGK+HQLPC +KFDGPC VS YFKPKSTGIEV
Sbjct: 1   MDSEKERKREVIV--DFDFGSDSGAVDLSGKVHQLPCAVKFDGPCSVSQYFKPKSTGIEV 60

Query: 61  DGLNVEEAYFRGRKLQGATISLPEGYSGYVLGKKSLGKSKSSDQCDDSSPWQVKAKFDNI 120
           DGL+V+ AYFRGRKLQGATISLPEGY GYV+G+KSL K K+S++  DSS WQVKAKF+NI
Sbjct: 61  DGLSVQNAYFRGRKLQGATISLPEGYYGYVIGRKSLRKRKASEESQDSSSWQVKAKFENI 120

Query: 121 TYWNHDTLPSQDDTFQRTFHWLTVAQALHKPVTAEDLASASAALNNLS 169
           TYWNHDTLP+QDDTFQR+FHWLTVAQALHKPVTAEDLA AS AL N+S
Sbjct: 121 TYWNHDTLPTQDDTFQRSFHWLTVAQALHKPVTAEDLADASTALKNMS 166

[Close]
BLAST of MELO3C021769 vs. TAIR 10
Match: AT2G39440.1 (CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 198.0 bits (502), Expect = 6.1e-51
Identity = 92/151 (60.93%), Postives = 118/151 (78.15%), Query Frame = 0 

Query: 16  DFDFGSDPKAL-DLSGKIHQLPCTIKFDGPCPVSHYFKPKSTGIEVDGLNVEEAYFRGRK 75
           DF   +D  ++ DLS ++HQLPC I+FDGP  VSHYFKPKS+ +E+DG+  EEA+FRGRK
Sbjct: 5   DFRAAADENSIVDLSSQVHQLPCCIRFDGPVEVSHYFKPKSSDVEIDGVKTEEAHFRGRK 64

Query: 76  LQGATISLPEGYSGYVLGKKS----LGKSKSSDQCDDSSPWQVKAKFDNITYWNHDTLPS 135
           LQGATISLP GYSG+VL + S     GK K+S   +D+  W+VKAKF+N+TYWNHD+LPS
Sbjct: 65  LQGATISLPSGYSGFVLRQASNLNANGKRKASMPTEDNQCWEVKAKFNNLTYWNHDSLPS 124

Query: 136 QDDTFQRTFHWLTVAQALHKPVTAEDLASAS 162
           +DDTF R+FHW ++A+ALHKPV  EDL + S
Sbjct: 125 KDDTFFRSFHWFSIAEALHKPVKVEDLVAVS 155

The following BLAST results are available for this feature:
BLAST of MELO3C021769 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8TDP18.8e-1031.65Ribonuclease H2 subunit C OS=Homo sapiens OX=9606 GN=RNASEH2C PE=1 SV=1[more]
Q104482.0e-0933.05Uncharacterized protein C12B10.15c OS=Schizosaccharomyces pombe (strain 972 / AT... [more]
BLAST of MELO3C021769 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008459055.13.6e-93100.00PREDICTED: uncharacterized protein C12B10.15c [Cucumis melo] >KAA0043234.1 ribon... [more]
XP_011660323.11.5e-8390.48uncharacterized protein C12B10.15c [Cucumis sativus] >KGN66902.1 hypothetical pr... [more]
XP_038893586.14.4e-7584.52uncharacterized protein C12B10.15c [Benincasa hispida][more]
KAG6583796.15.0e-7178.57Ribonuclease H2 subunit C, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022927160.12.5e-7077.98uncharacterized protein C12B10.15c [Cucurbita moschata][more]
BLAST of MELO3C021769 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TIT81.7e-93100.00Ribonuclease H2 subunit C isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3C9A81.7e-93100.00uncharacterized protein C12B10.15c OS=Cucumis melo OX=3656 GN=LOC103498279 PE=4 ... [more]
A0A0A0M1A27.3e-8490.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G708160 PE=4 SV=1[more]
A0A6J1EN411.2e-7077.98uncharacterized protein C12B10.15c OS=Cucurbita moschata OX=3662 GN=LOC111434094... [more]
A0A6J1KH291.7e-6976.79uncharacterized protein C12B10.15c OS=Cucurbita maxima OX=3661 GN=LOC111495695 P... [more]
BLAST of MELO3C021769 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39440.16.1e-5160.93CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013924Ribonuclease H2, subunit CPFAMPF08615RNase_H2_suCcoord: 32..148
e-value: 6.3E-24
score: 84.8
IPR013924Ribonuclease H2, subunit CCDDcd09271RNase_H2-Ccoord: 33..126
e-value: 1.29712E-36
score: 120.168
NoneNo IPR availableGENE3D2.40.128.680coord: 12..155
e-value: 6.9E-41
score: 140.8
NoneNo IPR availablePANTHERPTHR47204OS02G0168900 PROTEINcoord: 18..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021769.1MELO3C021769.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006401 RNA catabolic process
cellular_component GO:0032299 ribonuclease H2 complex