MELO3C021740 (gene) Melon (DHL92) v4

Overview
NameMELO3C021740
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGirdin-like
Locationchr09: 5337006 .. 5337872 (+)
RNA-Seq ExpressionMELO3C021740
SyntenyMELO3C021740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGAGTTTAGATGTCCAAGGTTAGATTTTAGTAGTCCATGGAACTTAATATGCAACACAATTAGTGAGTTTGGTATTGCAGTTTGGGATCCAACATATCCAAGGAAGGAGGCTTGGTTGTCTTTCTTTGCAAAACTGACTTCTGAAAATGACATATGGAAGGTTTAATGGATGCCTTTGAACGCGGTGATATATAGATGTGGAGATTTTCACAGTGTGCCTTTGTTGGGACTATGGGGAGGGGTTAACTATACACCATTGTTAGTTTTGCATCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGAGTCTGACTTTTCATACGATCTTGAAGATTGTCAAGGGAAAAAACGTCGAGCAATATGTGCATGGAAATCTGTAAGTAAGATAAAAAAACAAAGGACATTACGAAGGAGTTACTAATGGGTACGAGGCATGGAAAGCAAACAGAAGGAAGAATATACTAGTTATCTCAAGGGAGGTAGTTAAAAGGGGAAAAGAGACAAGCTTTAAACAACCAAATCAGTGGATTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACAAGAAACTTCATAAAGAGACAAGTCAATGGATGGATCATGTGACTTATTTGCCAAACAAACTCGAAAAACACAAATAAGTAACAGTGGGGTCAGAAGATGAATATATTAAAGATTTAGAAAGTAGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAAAAACACAAATAATGGATTTGGAAGCACACAATCACTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCAAGCGCTCTAAAGA

mRNA sequence

ATAGAGTTTAGATGTCCAAGGTTAGATTTTAGTAGTCCATGGAACTTAATATGCAACACAATTAGTGAGTTTGGTATTGCAGTTTGGGATCCAACATATTATACACCATTGTTAGTTTTGCATCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGAGTCTGACTTTTCATACGATCTTGAAGATTGTCAAGGGAAAAAACGTCGAGCAATATGTGCATGGAAATCTGTAAGTAAGATAAAAAAACAAAGGACATTACGAAGGAGTTACTAATGGGTACGAGGCATGGAAAGCAAACAGAAGGAAGAATATACTAGTTATCTCAAGGGAGGTAGTTAAAAGGGGAAAAGAGACAAGCTTTAAACAACCAAATCAGTGGATTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACAAGAAACTTCATAAAGAGACAAGTCAATGGATGGATCATGTGACTTATTTGCCAAACAAACTCGAAAAACACAAATAAGTAACAGTGGGGTCAGAAGATGAATATATTAAAGATTTAGAAAGTAGGAAGGAATATTTTCTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAAAAACACAAATAATGGATTTGGAAGCACACAATCACTCTTTGCGTCAAACTGTTGATAACCTACATCTGAAGATGGTCAAGCGCTCTAAAGA

Coding sequence (CDS)

ATAGAGTTTAGATGTCCAAGGTTAGATTTTAGTAGTCCATGGAACTTAATATGCAACACAATTAGTGAGTTTGGTATTGCAGTTTGGGATCCAACATATTATACACCATTGTTAGTTTTGCATCAGGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGAGTCTGACTTTTCATACGATCTTGAAGATTGTCAAGGGAAAAAACGTCGAGCAATATGTGCATGGAAATCTGTAAGTAAGATAAAAAAACAAAGGACATTACGAAGGAGTTACTAA

Protein sequence

IEFRCPRLDFSSPWNLICNTISEFGIAVWDPTYYTPLLVLHQVWLKQFIPPTHNLQESDFSYDLEDCQGKKRRAICAWKSVSKIKKQRTLRRSY
Homology
[Close]
BLAST of MELO3C021740 vs. NCBI nr
Match: KAA0060423.1 (uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 3.4e-32
Identity = 76/134 (56.72%), Postives = 80/134 (59.70%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY---------------------------- 61
           EFRCPRLDFSSPWNLI NTISEFG+AVWDPTY                            
Sbjct: 273 EFRCPRLDFSSPWNLIRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSKNVVWKAQWMPLK 332

Query: 62  ----------------------YTPLLVLHQVWLKQFIPPTHNLQESDFSYDLEDCQGKK 86
                                 YTPLLVL QVWLKQFIPPTHNLQESDFSYD EDCQGKK
Sbjct: 333 AVIYRCRDFHSMPLLGPRGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKK 392

[Close]
BLAST of MELO3C021740 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 7.5e-32
Identity = 75/134 (55.97%), Postives = 80/134 (59.70%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY---------------------------- 61
           EFRCPRLDFSSPWNL+ NTISEFG+AVWDPTY                            
Sbjct: 242 EFRCPRLDFSSPWNLMRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLK 301

Query: 62  ----------------------YTPLLVLHQVWLKQFIPPTHNLQESDFSYDLEDCQGKK 86
                                 YTPLLVL QVWLKQFIPPTHNLQESDFSYD EDCQGKK
Sbjct: 302 AVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKK 361

[Close]
BLAST of MELO3C021740 vs. NCBI nr
Match: KAA0046902.1 (girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 9.1e-30
Identity = 72/134 (53.73%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY---------------------------- 61
           EFRCPRLDFSSPWNL+ NTISEF +AVWDPTY                            
Sbjct: 53  EFRCPRLDFSSPWNLMRNTISEFAMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLK 112

Query: 62  ----------------------YTPLLVLHQVWLKQFIPPTHNLQESDFSYDLEDCQGKK 86
                                 YTPLLVL QVWLKQFIPPTHNLQESDFSYD EDCQGKK
Sbjct: 113 AVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKK 172

[Close]
BLAST of MELO3C021740 vs. NCBI nr
Match: TYK07552.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 72/134 (53.73%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY---------------------------- 61
           EFRCPRLDFSSPWNL+ NTISEFG+AVWDPTY                            
Sbjct: 263 EFRCPRLDFSSPWNLMRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENVIWKTQWMPLK 322

Query: 62  ----------------------YTPLLVLHQVWLKQFIPPTHNLQESDFSYDLEDCQGKK 86
                                 YTPLLVL QVWLKQFIP THNLQESDFSY+ EDCQGKK
Sbjct: 323 AVIYRRGNFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYNPEDCQGKK 382

[Close]
BLAST of MELO3C021740 vs. NCBI nr
Match: KAA0043107.1 (Gag-pro-like protein [Cucumis melo var. makuwa] >TYJ96379.1 Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 66/104 (63.46%), Postives = 72/104 (69.23%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY--------------------YTPLLVLH 61
           EFRCPRLDFSSPWNL+ NTI EFG+ VWDPTY                        + L 
Sbjct: 34  EFRCPRLDFSSPWNLMRNTIGEFGMTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLK 93

Query: 62  QVWLKQFIPPTHNLQESDFSYDLEDCQGKKRRAICAWKSVSKIK 86
            VWLKQFIPPTHN+QESDFSYD EDCQGKKR+A+CAWKSV KIK
Sbjct: 94  AVWLKQFIPPTHNMQESDFSYDPEDCQGKKRQAVCAWKSVRKIK 137

[Close]
BLAST of MELO3C021740 vs. ExPASy TrEMBL
Match: A0A5A7UWQ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002420 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32
Identity = 76/134 (56.72%), Postives = 80/134 (59.70%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY---------------------------- 61
           EFRCPRLDFSSPWNLI NTISEFG+AVWDPTY                            
Sbjct: 273 EFRCPRLDFSSPWNLIRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSKNVVWKAQWMPLK 332

Query: 62  ----------------------YTPLLVLHQVWLKQFIPPTHNLQESDFSYDLEDCQGKK 86
                                 YTPLLVL QVWLKQFIPPTHNLQESDFSYD EDCQGKK
Sbjct: 333 AVIYRCRDFHSMPLLGPRGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKK 392

[Close]
BLAST of MELO3C021740 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.6e-32
Identity = 75/134 (55.97%), Postives = 80/134 (59.70%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY---------------------------- 61
           EFRCPRLDFSSPWNL+ NTISEFG+AVWDPTY                            
Sbjct: 242 EFRCPRLDFSSPWNLMRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLK 301

Query: 62  ----------------------YTPLLVLHQVWLKQFIPPTHNLQESDFSYDLEDCQGKK 86
                                 YTPLLVL QVWLKQFIPPTHNLQESDFSYD EDCQGKK
Sbjct: 302 AVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKK 361

[Close]
BLAST of MELO3C021740 vs. ExPASy TrEMBL
Match: A0A5D3BYI1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.4e-30
Identity = 72/134 (53.73%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY---------------------------- 61
           EFRCPRLDFSSPWNL+ NTISEF +AVWDPTY                            
Sbjct: 53  EFRCPRLDFSSPWNLMRNTISEFAMAVWDPTYPRKEAWLSFFAKLTSENVIWKAQWMPLK 112

Query: 62  ----------------------YTPLLVLHQVWLKQFIPPTHNLQESDFSYDLEDCQGKK 86
                                 YTPLLVL QVWLKQFIPPTHNLQESDFSYD EDCQGKK
Sbjct: 113 AVIYRCGDFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPPTHNLQESDFSYDPEDCQGKK 172

[Close]
BLAST of MELO3C021740 vs. ExPASy TrEMBL
Match: A0A5D3C8D9 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00220 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.8e-30
Identity = 72/134 (53.73%), Postives = 78/134 (58.21%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY---------------------------- 61
           EFRCPRLDFSSPWNL+ NTISEFG+AVWDPTY                            
Sbjct: 263 EFRCPRLDFSSPWNLMRNTISEFGMAVWDPTYPRKEAWLSFFAKLTSENVIWKTQWMPLK 322

Query: 62  ----------------------YTPLLVLHQVWLKQFIPPTHNLQESDFSYDLEDCQGKK 86
                                 YTPLLVL QVWLKQFIP THNLQESDFSY+ EDCQGKK
Sbjct: 323 AVIYRRGNFHSVPLLGPWGGVNYTPLLVLRQVWLKQFIPLTHNLQESDFSYNPEDCQGKK 382

[Close]
BLAST of MELO3C021740 vs. ExPASy TrEMBL
Match: A0A5D3BBJ5 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00030 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 66/104 (63.46%), Postives = 72/104 (69.23%), Query Frame = 0 

Query: 2   EFRCPRLDFSSPWNLICNTISEFGIAVWDPTY--------------------YTPLLVLH 61
           EFRCPRLDFSSPWNL+ NTI EFG+ VWDPTY                        + L 
Sbjct: 34  EFRCPRLDFSSPWNLMRNTIGEFGMTVWDPTYPRKEAWLFFFAKPTSENVIWKAQWMPLK 93

Query: 62  QVWLKQFIPPTHNLQESDFSYDLEDCQGKKRRAICAWKSVSKIK 86
            VWLKQFIPPTHN+QESDFSYD EDCQGKKR+A+CAWKSV KIK
Sbjct: 94  AVWLKQFIPPTHNMQESDFSYDPEDCQGKKRQAVCAWKSVRKIK 137

The following BLAST results are available for this feature:
BLAST of MELO3C021740 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060423.13.4e-3256.72uncharacterized protein E6C27_scaffold22G002420 [Cucumis melo var. makuwa][more]
KAA0036941.17.5e-3255.97girdin-like [Cucumis melo var. makuwa][more]
KAA0046902.19.1e-3053.73girdin-like [Cucumis melo var. makuwa] >TYK03246.1 girdin-like [Cucumis melo var... [more]
TYK07552.11.2e-2953.73girdin-like [Cucumis melo var. makuwa][more]
KAA0043107.12.7e-2963.46Gag-pro-like protein [Cucumis melo var. makuwa] >TYJ96379.1 Gag-pro-like protein... [more]
BLAST of MELO3C021740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C021740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UWQ61.6e-3256.72Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7T5S73.6e-3255.97Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=... [more]
A0A5D3BYI14.4e-3053.73Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00630 PE... [more]
A0A5D3C8D95.8e-3053.73Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00220 PE... [more]
A0A5D3BBJ51.3e-2963.46Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546... [more]
BLAST of MELO3C021740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021740.1MELO3C021740.1mRNA