MELO3C021669 (gene) Melon (DHL92) v4

Overview


Name	MELO3C021669
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	40S ribosomal protein S19-3-like
Location	chr12: 15059918 .. 15060067 (-)
RNA-Seq Expression	MELO3C021669
Synteny	MELO3C021669

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGAAGATCTACTCGAGAGGAGGTCTTGGTGTTGGAGCACTCAAGCAGATTTACGGTGGAAGCAAGAGGAACGACACTAAAATTTTAGATCAAGTTGCTGGCCAGATTGTTGTGATTGATCAGTTGCCTCTATTCTTAAATTAG

mRNA sequence

ATGGCAAGGAAGATCTACTCGAGAGGAGGTCTTGGTGTTGGAGCACTCAAGCAGATTTACGGTGGAAGCAAGAGGAACGACACTAAAATTTTAGATCAAGTTGCTGGCCAGATTGTTGTGATTGATCAGTTGCCTCTATTCTTAAATTAG

Coding sequence (CDS)

ATGGCAAGGAAGATCTACTCGAGAGGAGGTCTTGGTGTTGGAGCACTCAAGCAGATTTACGGTGGAAGCAAGAGGAACGACACTAAAATTTTAGATCAAGTTGCTGGCCAGATTGTTGTGATTGATCAGTTGCCTCTATTCTTAAATTAG

Protein sequence

MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN

Homology

[Close]

BLAST of MELO3C021669 vs. ExPASy Swiss-Prot
Match: Q9LF30 (40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-05
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARKIY RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKIYLRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669 vs. ExPASy Swiss-Prot
Match: Q9SGA6 (40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-05
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARK+Y RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669 vs. ExPASy Swiss-Prot
Match: Q9FNP8 (40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-05
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARK+Y RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669 vs. NCBI nr
Match: TYK12406.1 (40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN 50
           MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN
Sbjct: 88  MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN 136

[Close]

BLAST of MELO3C021669 vs. NCBI nr
Match: KAA0054367.1 (40S ribosomal protein S19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN 50
           MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN
Sbjct: 92  MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN 140

[Close]

BLAST of MELO3C021669 vs. ExPASy TrEMBL
Match: A0A5A7UIG7 (40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00980 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-18
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN 50
           MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN
Sbjct: 92  MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN 140

[Close]

BLAST of MELO3C021669 vs. ExPASy TrEMBL
Match: A0A5D3CPQ4 (40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001920 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.7e-18
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0


Query: 1   MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN 50
           MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN
Sbjct: 88  MARKIYSRGGLGVGALKQIYGGSKRNDTKILDQVAGQIVVIDQLPLFLN 136

[Close]

BLAST of MELO3C021669 vs. ExPASy TrEMBL
Match: A0A2P6RVP0 (Putative ribosomal protein S19e OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0133791 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.3e-04
Identity = 23/29 (79.31%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARKIYSRGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKIYSRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669 vs. TAIR 10
Match: AT5G15520.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 49.7 bits (117), Expect = 7.9e-07
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARKIY RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKIYLRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669 vs. TAIR 10
Match: AT3G02080.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-06
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARK+Y RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSR 89

[Close]

BLAST of MELO3C021669 vs. TAIR 10
Match: AT5G61170.1 (Ribosomal protein S19e family protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-06
Identity = 21/29 (72.41%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MARKIYSRGGLGVGALKQIYGGSKRNDTK 30
          MARK+Y RGGLGVGA ++IYGGSKRN ++
Sbjct: 61 MARKVYLRGGLGVGAFRRIYGGSKRNGSR 89

The following BLAST results are available for this feature:

BLAST of MELO3C021669 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF30	1.1e-05	75.86	40S ribosomal protein S19-2 OS=Arabidopsis thaliana OX=3702 GN=RPS19B PE=2 SV=1	[more]
Q9SGA6	1.4e-05	72.41	40S ribosomal protein S19-1 OS=Arabidopsis thaliana OX=3702 GN=RPS19A PE=2 SV=1	[more]
Q9FNP8	1.4e-05	72.41	40S ribosomal protein S19-3 OS=Arabidopsis thaliana OX=3702 GN=RPS19C PE=2 SV=1	[more]

BLAST of MELO3C021669 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK12406.1	1.6e-17	100.00	40S ribosomal protein S19-3-like [Cucumis melo var. makuwa]	[more]
KAA0054367.1	1.6e-17	100.00	40S ribosomal protein S19-3-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C021669 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIG7	7.7e-18	100.00	40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3CPQ4	7.7e-18	100.00	40S ribosomal protein S19-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A2P6RVP0	8.3e-04	79.31	Putative ribosomal protein S19e OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0133...	[more]

BLAST of MELO3C021669 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15520.1	7.9e-07	75.86	Ribosomal protein S19e family protein	[more]
AT3G02080.1	1.0e-06	72.41	Ribosomal protein S19e family protein	[more]
AT5G61170.1	1.0e-06	72.41	Ribosomal protein S19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..43 e-value: 3.0E-7 score: 32.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021669.1	MELO3C021669.1	mRNA