MELO3C021340 (gene) Melon (DHL92) v4

Overview
NameMELO3C021340
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionpolyadenylation factor subunit 2-like
Locationchr11: 27930830 .. 27931060 (-)
RNA-Seq ExpressionMELO3C021340
SyntenyMELO3C021340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGCCAATGCTTCGACAAAGACAAAGAAGTTGGGGATGAGTGAAATTCTTGGAATGGGAGCAGGGTTGTTGGTCGGAGGGCTTTTGCTTGGGGAATTGACGGCGGATGCTGGGGCAGCGCGGTCGTTTGATTTATTTTCCCATCTCATGGGCGGTGGAGGAATGGATTACGATGCAAGCATGCAACCTATGTCTGATAGTATCGATCTGCTCGATACCATTGGGTGA

mRNA sequence

ATGCTTGCCAATGCTTCGACAAAGACAAAGAAGTTGGGGATGAGTGAAATTCTTGGAATGGGAGCAGGGTTGTTGGTCGGAGGGCTTTTGCTTGGGGAATTGACGGCGGATGCTGGGGCAGCGCGGTCGTTTGATTTATTTTCCCATCTCATGGGCGGTGGAGGAATGGATTACGATGCAAGCATGCAACCTATGTCTGATAGTATCGATCTGCTCGATACCATTGGGTGA

Coding sequence (CDS)

ATGCTTGCCAATGCTTCGACAAAGACAAAGAAGTTGGGGATGAGTGAAATTCTTGGAATGGGAGCAGGGTTGTTGGTCGGAGGGCTTTTGCTTGGGGAATTGACGGCGGATGCTGGGGCAGCGCGGTCGTTTGATTTATTTTCCCATCTCATGGGCGGTGGAGGAATGGATTACGATGCAAGCATGCAACCTATGTCTGATAGTATCGATCTGCTCGATACCATTGGGTGA

Protein sequence

MLANASTKTKKLGMSEILGMGAGLLVGGLLLGELTADAGAARSFDLFSHLMGGGGMDYDASMQPMSDSIDLLDTIG
Homology
BLAST of MELO3C021340 vs. NCBI nr
Match: XP_038875072.1 (formin-like protein 20 [Benincasa hispida])

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-17
Identity = 57/74 (77.03%), Postives = 60/74 (81.08%), Query Frame = 0

Query: 4   NASTKTKKLGMSEILGMGAGLLVGGLLLGELTADAGAAR-SFDLFSHLMGGGGMDYDASM 63
           NA TK KK GMS+ILGMGAG LVGGLLLGEL AD GA   SFDLFS   GGGG+DYDASM
Sbjct: 103 NAPTKKKKSGMSKILGMGAG-LVGGLLLGELAADGGAVTPSFDLFSDPTGGGGLDYDASM 162

Query: 64  QPMSDSIDLLDTIG 77
           Q MSDS+DLL TIG
Sbjct: 163 QSMSDSMDLLGTIG 175

BLAST of MELO3C021340 vs. NCBI nr
Match: XP_022959345.1 (protein SRC2-like [Cucurbita moschata])

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-09
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 6   STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDA 65
           +T  KK GMS++LG+GAGLL   VGGLLLG+  ADAGAA  SF+ FS   GGG     DA
Sbjct: 110 TTGKKKKGMSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFEFFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 77
            MQ  SDSIDLL TIG
Sbjct: 170 RMQSASDSIDLLGTIG 185

BLAST of MELO3C021340 vs. NCBI nr
Match: XP_023006250.1 (polyadenylation factor subunit 2-like [Cucurbita maxima])

HSP 1 Score: 71.6 bits (174), Expect = 3.2e-09
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 6   STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDA 65
           +T  KK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA
Sbjct: 110 TTGKKKKGKSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 77
            MQ +SDSIDLL TIG
Sbjct: 170 RMQSVSDSIDLLGTIG 185

BLAST of MELO3C021340 vs. NCBI nr
Match: KAG6575060.1 (hypothetical protein SDJN03_25699, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.9 bits (172), Expect = 5.5e-09
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 6   STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDA 65
           +T  KK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA
Sbjct: 110 TTGKKKKGKSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 77
            MQ  SDSIDLL TIG
Sbjct: 170 RMQSASDSIDLLGTIG 185

BLAST of MELO3C021340 vs. NCBI nr
Match: XP_023548312.1 (formin-like protein 20 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.3 bits (168), Expect = 1.6e-08
Identity = 46/75 (61.33%), Postives = 53/75 (70.67%), Query Frame = 0

Query: 6   STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDA 65
           +T  KK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA
Sbjct: 110 TTGKKKKGKSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTI 76
            MQ +SDSIDLL TI
Sbjct: 170 RMQSVSDSIDLLGTI 184

BLAST of MELO3C021340 vs. ExPASy TrEMBL
Match: A0A6J1KZM6 (polyadenylation factor subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC111499038 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 6   STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDA 65
           +T  KK G S++LG+GAGLL   VGGLLLG+  ADAGAA  SF+LFS   GGG     DA
Sbjct: 110 TTGKKKKGKSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFELFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 77
            MQ +SDSIDLL TIG
Sbjct: 170 RMQSVSDSIDLLGTIG 185

BLAST of MELO3C021340 vs. ExPASy TrEMBL
Match: A0A6J1H610 (protein SRC2-like OS=Cucurbita moschata OX=3662 GN=LOC111460345 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 0

Query: 6   STKTKKLGMSEILGMGAGLL---VGGLLLGELTADAGAAR-SFDLFSHLMGGG-GMDYDA 65
           +T  KK GMS++LG+GAGLL   VGGLLLG+  ADAGAA  SF+ FS   GGG     DA
Sbjct: 110 TTGKKKKGMSKMLGLGAGLLGGVVGGLLLGDFAADAGAAAPSFEFFSDATGGGFDQLCDA 169

Query: 66  SMQPMSDSIDLLDTIG 77
            MQ  SDSIDLL TIG
Sbjct: 170 RMQSASDSIDLLGTIG 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038875072.11.1e-1777.03formin-like protein 20 [Benincasa hispida][more]
XP_022959345.13.2e-0961.84protein SRC2-like [Cucurbita moschata][more]
XP_023006250.13.2e-0961.84polyadenylation factor subunit 2-like [Cucurbita maxima][more]
KAG6575060.15.5e-0961.84hypothetical protein SDJN03_25699, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023548312.11.6e-0861.33formin-like protein 20 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A6J1KZM61.6e-0961.84polyadenylation factor subunit 2-like OS=Cucurbita maxima OX=3661 GN=LOC11149903... [more]
A0A6J1H6101.6e-0961.84protein SRC2-like OS=Cucurbita moschata OX=3662 GN=LOC111460345 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021340.1MELO3C021340.1mRNA