MELO3C021098 (gene) Melon (DHL92) v4

Overview
NameMELO3C021098
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase domain-containing protein
Locationchr01: 26200732 .. 26201344 (+)
RNA-Seq ExpressionMELO3C021098
SyntenyMELO3C021098
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACAAGGATTCAACCTGGGCTTCGGCCAAGGGTACTTGTTAAAGAGAAAACCCAGGAAATTAAAGGGGTGAAGTTGTACTCAAAGAACGATGCAAAAAAGGCATTAAAATTTGTGGCTGAAAATAAAGCGATCACTTTCCTAAAAAAAGGAAAGATCCATTCGATGGTGAAAACAAGTATGCAATCCTCAAAGAAGGTGGGAACCGACCAAGATTTGAAAGATTTTGAACCCCAATCTGATAATTCTATGTTGAGCCCTAGGAGTTTGCCTCTTGACAATCCCTTCACACCTTTGGTAGAAGAGCCGAAGGATTTTCCCATTGATTGTAATGATTTTCCTTCTGTAGATAACGAAGAGTTGGTTGTTGCGCAAGTTGACAATCAGCTGGTCTGTGTTGAAGAAGATGGCAGCACATTAGAAAACAAAACAGAGGAGGATGTGCTTGTAAATGGAACTGACATTGAGCCCTTTGTGACCACACAAAAATCGTTCCCTTTAAATAAGAAGGTAGTAGATGCTTTGTGGGATTATAATTTTTGTATTACAGCAGTCTCAAAAAAAGCAAAGCGTTGAAGAAGAATGGAGGTACCGCGAAAAAATCAAGTAA

mRNA sequence

ATGGACACAAGGATTCAACCTGGGCTTCGGCCAAGGGTACTTGTTAAAGAGAAAACCCAGGAAATTAAAGGGGTGAAGTTGTACTCAAAGAACGATGCAAAAAAGGCATTAAAATTTGTGGCTGAAAATAAAGCGATCACTTTCCTAAAAAAAGGAAAGATCCATTCGATGGTGAAAACAAGTATGCAATCCTCAAAGAAGGTGGGAACCGACCAAGATTTGAAAGATTTTGAACCCCAATCTGATAATTCTATGTTGAGCCCTAGGAGTTTGCCTCTTGACAATCCCTTCACACCTTTGGTAGAAGAGCCGAAGGATTTTCCCATTGATTGTAATGATTTTCCTTCTGTAGATAACGAAGAGTTGGTTGTTGCGCAAGTTGACAATCAGCTGGTCTGTGTTGAAGAAGATGGCAGCACATTAGAAAACAAAACAGAGGAGGATGTGCTTGTAAATGGAACTGACATTGAGCCCTTTGTGACCACACAAAAATCGTTCCCTTTAAATAAGAAGCAGTCTCAAAAAAAGCAAAGCGTTGAAGAAGAATGGAGGTACCGCGAAAAAATCAAGTAA

Coding sequence (CDS)

ATGGACACAAGGATTCAACCTGGGCTTCGGCCAAGGGTACTTGTTAAAGAGAAAACCCAGGAAATTAAAGGGGTGAAGTTGTACTCAAAGAACGATGCAAAAAAGGCATTAAAATTTGTGGCTGAAAATAAAGCGATCACTTTCCTAAAAAAAGGAAAGATCCATTCGATGGTGAAAACAAGTATGCAATCCTCAAAGAAGGTGGGAACCGACCAAGATTTGAAAGATTTTGAACCCCAATCTGATAATTCTATGTTGAGCCCTAGGAGTTTGCCTCTTGACAATCCCTTCACACCTTTGGTAGAAGAGCCGAAGGATTTTCCCATTGATTGTAATGATTTTCCTTCTGTAGATAACGAAGAGTTGGTTGTTGCGCAAGTTGACAATCAGCTGGTCTGTGTTGAAGAAGATGGCAGCACATTAGAAAACAAAACAGAGGAGGATGTGCTTGTAAATGGAACTGACATTGAGCCCTTTGTGACCACACAAAAATCGTTCCCTTTAAATAAGAAGCAGTCTCAAAAAAAGCAAAGCGTTGAAGAAGAATGGAGGTACCGCGAAAAAATCAAGTAA

Protein sequence

MDTRIQPGLRPRVLVKEKTQEIKGVKLYSKNDAKKALKFVAENKAITFLKKGKIHSMVKTSMQSSKKVGTDQDLKDFEPQSDNSMLSPRSLPLDNPFTPLVEEPKDFPIDCNDFPSVDNEELVVAQVDNQLVCVEEDGSTLENKTEEDVLVNGTDIEPFVTTQKSFPLNKKQSQKKQSVEEEWRYREKIK
Homology
[Close]
BLAST of MELO3C021098 vs. NCBI nr
Match: TYK11577.1 (hypothetical protein E5676_scaffold263G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-48
Identity = 107/119 (89.92%), Postives = 108/119 (90.76%), Query Frame = 0 

Query: 57  MVKTSMQSSKKVGTDQDLKDFEPQSDNSMLSPRSLPLDNPFTPLVEEPKDFPIDCNDFPS 116
           MVKTSMQSSKKVGTDQDLKDF+PQSDNSMLS RSLPLDNPFTPLVEEPKDFPIDCNDFP 
Sbjct: 1   MVKTSMQSSKKVGTDQDLKDFKPQSDNSMLSRRSLPLDNPFTPLVEEPKDFPIDCNDFPF 60

Query: 117 VDNEELVVAQVDNQLVCVEEDGSTLENKTEEDVLVNGTDIEPFVTTQKSFPLNKKQSQK 176
           VDNE      VDNQLVCVEEDGSTLENKTEEDVLVNGTDIEPFVTTQKSFPLNKK   K
Sbjct: 61  VDNE------VDNQLVCVEEDGSTLENKTEEDVLVNGTDIEPFVTTQKSFPLNKKVGLK 113

[Close]
BLAST of MELO3C021098 vs. ExPASy TrEMBL
Match: A0A5D3CI31 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00140 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.1e-48
Identity = 107/119 (89.92%), Postives = 108/119 (90.76%), Query Frame = 0 

Query: 57  MVKTSMQSSKKVGTDQDLKDFEPQSDNSMLSPRSLPLDNPFTPLVEEPKDFPIDCNDFPS 116
           MVKTSMQSSKKVGTDQDLKDF+PQSDNSMLS RSLPLDNPFTPLVEEPKDFPIDCNDFP 
Sbjct: 1   MVKTSMQSSKKVGTDQDLKDFKPQSDNSMLSRRSLPLDNPFTPLVEEPKDFPIDCNDFPF 60

Query: 117 VDNEELVVAQVDNQLVCVEEDGSTLENKTEEDVLVNGTDIEPFVTTQKSFPLNKKQSQK 176
           VDNE      VDNQLVCVEEDGSTLENKTEEDVLVNGTDIEPFVTTQKSFPLNKK   K
Sbjct: 61  VDNE------VDNQLVCVEEDGSTLENKTEEDVLVNGTDIEPFVTTQKSFPLNKKVGLK 113

The following BLAST results are available for this feature:
BLAST of MELO3C021098 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11577.12.3e-4889.92hypothetical protein E5676_scaffold263G00140 [Cucumis melo var. makuwa][more]
BLAST of MELO3C021098 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C021098 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CI311.1e-4889.92Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
BLAST of MELO3C021098 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021098.1MELO3C021098.1mRNA