MELO3C021020 (gene) Melon (DHL92) v4

Overview
NameMELO3C021020
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionIntegrase catalytic domain-containing protein
Locationchr01: 24647191 .. 24647412 (-)
RNA-Seq ExpressionMELO3C021020
SyntenyMELO3C021020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAAATGAAATCTAGGAAGGCGACTTCCGTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGACAAACAAGGAAGACGAAAAGAAGGTTCGTGCAAGAGATTTAGGGCGACCGAGAACAAGGAAGACAAAGAGAAGGTTCGTGCGAGAGATTTAG

mRNA sequence

ATGGGGAAAATGAAATCTAGGAAGGCGACTTCCGTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGACAAACAAGGAAGACGAAAAGAAGGTTCGTGCAAGAGATTTAGGGCGACCGAGAACAAGGAAGACAAAGAGAAGGTTCGTGCGAGAGATTTAG

Coding sequence (CDS)

ATGGGGAAAATGAAATCTAGGAAGGCGACTTCCGTGCGAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGACAAACAAGGAAGACGAAAAGAAGGTTCGTGCAAGAGATTTAGGGCGACCGAGAACAAGGAAGACAAAGAGAAGGTTCGTGCGAGAGATTTAG

Protein sequence

MGKMKSRKATSVREKAQQKHDRGFDFREQGGRREGSCERFRVMTNKEDEKKVRARDLGRPRTRKTKRRFVREI
Homology
[Close]
BLAST of MELO3C021020 vs. NCBI nr
Match: KAA0050651.1 (uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK07783.1 uncharacterized protein E5676_scaffold1737G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 5.6e-11
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 8  KATSVREKAQQKHDRGFDFREQGGRREGSCERFRVMTNKEDEKK 52
          KA SVREKAQQKHDR FDF EQGGRREGSCERFRVM NKEDE+K
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

[Close]
BLAST of MELO3C021020 vs. ExPASy TrEMBL
Match: A0A5D3C784 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00660 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 8  KATSVREKAQQKHDRGFDFREQGGRREGSCERFRVMTNKEDEKK 52
          KA SVREKAQQKHDR FDF EQGGRREGSCERFRVM NKEDE+K
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

The following BLAST results are available for this feature:
BLAST of MELO3C021020 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050651.15.6e-1188.64uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of MELO3C021020 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C021020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C7842.7e-1188.64Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C021020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021020.1MELO3C021020.1mRNA