MELO3C021004 (gene) Melon (DHL92) v4

Overview
NameMELO3C021004
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionLate embryogenesis abundant protein (LEA) family protein
Locationchr01: 24195459 .. 24196395 (-)
RNA-Seq ExpressionMELO3C021004
SyntenyMELO3C021004
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGTTCACAGGTTAGTGCAGCAGCTGATGGAGCTGCCCAAGCTGTGAAGCGAACCACCGAGAAGGCCGCCGAAGAAGTAAAAGATAAGGCCGTCTCTGCCGCCGAGGAGGTAATTATTCACAATAACCAACTCTTTTCACATTTTTCATATATACTTAAAATTTTTTCAACTTTTATATATATTCGTTTTGTTTCTTAAATAGACCAATTGAGATTGGTAGCACTTTTAGGACTTCTAATATTGAAGTGTATGATATGAGAACGTTTTTCTAATTATATATACATACACATATATATATATATTTTTTGTAAAATCTATACTCTATTATTTTTCGAGTAGTGATAGACTTTATTCTCTAGTAATAATCTACTAGCGATGTATCTTTTTTAATAGACTCCATGAATATTTATATCTAAATTTTATTACGTTTACAAATTCTTATATATATATATATATATATATATTTTGATATTTTGGATATGCATGATTGTTATATTCTTGAATATGTAATGATTTCTAATTAATTAAATTGTAGTATGTAATAACTACTGTGTTTATACTCATTTAAGCGAAACATATTTAATGAAAATACATAGACTAGATTATTACGCATTCAAATTTAGAACTAATTGAATCATGAAAAACTAAAGTTGAAGTTCAGCAACTCTCATGTAAGGATGTTTTCTTTAAATAATGGGTTGTTAAAACAAAAATGCAGGTGACTCAAAAAACAAAGGATGTAGCAGGGAAGGTGAGTGAAACAGCACAAGATATGGCTGGAAAGGCAAAGCAAACAGTTGAAGATGCATGGGGATCAGTGAAGGATACAACTCAAAACATTAAAGAGAAAGTGGTTGGCAAAGCTGAAGAATCCAAAGAAGCCATTAAAGACACTGCAGAAAACATAAAAAACAATATCAAGTCTAACTGTTGA

mRNA sequence

GGAAGTTCACAGGTTAGTGCAGCAGCTGATGGAGCTGCCCAAGCTGTGAAGCGAACCACCGAGAAGGCCGCCGAAGAAGTAAAAGATAAGGCCGTCTCTGCCGCCGAGGAGGTGACTCAAAAAACAAAGGATGTAGCAGGGAAGGTGAGTGAAACAGCACAAGATATGGCTGGAAAGGCAAAGCAAACAGTTGAAGATGCATGGGGATCAGTGAAGGATACAACTCAAAACATTAAAGAGAAAGTGGTTGGCAAAGCTGAAGAATCCAAAGAAGCCATTAAAGACACTGCAGAAAACATAAAAAACAATATCAAGTCTAACTGTTGA

Coding sequence (CDS)

GGAAGTTCACAGGTTAGTGCAGCAGCTGATGGAGCTGCCCAAGCTGTGAAGCGAACCACCGAGAAGGCCGCCGAAGAAGTAAAAGATAAGGCCGTCTCTGCCGCCGAGGAGGTGACTCAAAAAACAAAGGATGTAGCAGGGAAGGTGAGTGAAACAGCACAAGATATGGCTGGAAAGGCAAAGCAAACAGTTGAAGATGCATGGGGATCAGTGAAGGATACAACTCAAAACATTAAAGAGAAAGTGGTTGGCAAAGCTGAAGAATCCAAAGAAGCCATTAAAGACACTGCAGAAAACATAAAAAACAATATCAAGTCTAACTGTTGA

Protein sequence

GSSQVSAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKAKQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC
Homology
BLAST of MELO3C021004 vs. NCBI nr
Match: XP_008457975.1 (PREDICTED: uncharacterized protein At4g13230 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-44
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   GSSQVSAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKA 60
           GSSQVSAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKA
Sbjct: 39  GSSQVSAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKA 98

Query: 61  KQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 109
           KQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC
Sbjct: 99  KQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 146

BLAST of MELO3C021004 vs. NCBI nr
Match: XP_011659168.1 (uncharacterized protein At4g13230 [Cucumis sativus] >KGN44571.1 hypothetical protein Csa_016428 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 6.1e-38
Identity = 98/109 (89.91%), Postives = 104/109 (95.41%), Query Frame = 0

Query: 1   GSSQV-SAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGK 60
           GSSQV +AAAD AA  VKRTTE+AAEEVKDKAVSAA+EVTQ+TK+VAGKVSETAQDMAGK
Sbjct: 39  GSSQVTAAAADEAAHVVKRTTERAAEEVKDKAVSAADEVTQRTKEVAGKVSETAQDMAGK 98

Query: 61  AKQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 109
           AKQTVEDAWGSVKDTTQNIK+KVVGKAEESKEAIKDTAENIK NIKSNC
Sbjct: 99  AKQTVEDAWGSVKDTTQNIKQKVVGKAEESKEAIKDTAENIKKNIKSNC 147

BLAST of MELO3C021004 vs. NCBI nr
Match: XP_038897424.1 (uncharacterized protein At4g13230 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 5.2e-37
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 0

Query: 2   SSQVSAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKAK 61
           S   +AAADGAAQ VKR TEKAAE+VKDKAVSAA+EVTQKTK+VAGKVSETAQD+AGKAK
Sbjct: 41  SKVAAAAADGAAQVVKRATEKAAEDVKDKAVSAADEVTQKTKEVAGKVSETAQDLAGKAK 100

Query: 62  QTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 109
           QTV+DAWGSVKDTTQNIKEKVVGKAEESKEAIKDTA+N+K NIK+NC
Sbjct: 101 QTVQDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNLKKNIKTNC 147

BLAST of MELO3C021004 vs. NCBI nr
Match: XP_022152517.1 (uncharacterized protein At4g13230 [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 0

Query: 6   SAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKAKQTVE 65
           +AAADGAAQ VKR TEKAAEEVKDKA SAAEEVTQKTK+VAGKVSETAQD+AGKAKQTV+
Sbjct: 47  AAAADGAAQGVKRATEKAAEEVKDKASSAAEEVTQKTKEVAGKVSETAQDLAGKAKQTVQ 106

Query: 66  DAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 109
           +AWGSVKDTTQNIKEKVVGKAEESKEAIKDTA+NIK+ IKSNC
Sbjct: 107 EAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNIKDKIKSNC 149

BLAST of MELO3C021004 vs. NCBI nr
Match: GAV70662.1 (hypothetical protein CFOL_v3_14160, partial [Cephalotus follicularis])

HSP 1 Score: 112.1 bits (279), Expect = 3.1e-21
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 4   QVSAAADGAAQAVKR---TTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKA 63
           + S+A D A QA K+     +K  E+VKDKA S AE+VT+K +D A KV ETAQD+  KA
Sbjct: 31  EASSACDKATQAAKQGANEAKKTCEDVKDKAASNAEQVTKKAEDAADKVKETAQDLTQKA 90

Query: 64  KQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKS 107
           KQTV+DAWGSVKDTT  IK+ VVGKAEESKE+IK+TAEN+K N+K+
Sbjct: 91  KQTVQDAWGSVKDTTTKIKDTVVGKAEESKESIKETAENVKRNVKN 136

BLAST of MELO3C021004 vs. ExPASy Swiss-Prot
Match: Q8LFD5 (Uncharacterized protein At4g13230 OS=Arabidopsis thaliana OX=3702 GN=At4g13230 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 16  VKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKAKQTVEDAWGSVKDTT 75
           V  TT    + V DKA  A ++V +K  + A  +S+ A ++  KAK T E+AW  VKDTT
Sbjct: 26  VHGTTSTRKDSVCDKATEAQQKVAKKADEGAQTISDAAGNLKDKAKNTAEEAWDKVKDTT 85

Query: 76  QNIKEKVVGKAEESKEAIKDTAENIKNNIKS 107
           + IK+ V GK EE+KE+IK TA+ ++ ++ +
Sbjct: 86  EKIKDTVTGKTEETKESIKATAKTVERSMNT 116

BLAST of MELO3C021004 vs. ExPASy TrEMBL
Match: A0A1S3C7D4 (uncharacterized protein At4g13230 OS=Cucumis melo OX=3656 GN=LOC103497533 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0

Query: 1   GSSQVSAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKA 60
           GSSQVSAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKA
Sbjct: 39  GSSQVSAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKA 98

Query: 61  KQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 109
           KQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC
Sbjct: 99  KQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 146

BLAST of MELO3C021004 vs. ExPASy TrEMBL
Match: A0A0A0K9U4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336500 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.0e-38
Identity = 98/109 (89.91%), Postives = 104/109 (95.41%), Query Frame = 0

Query: 1   GSSQV-SAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGK 60
           GSSQV +AAAD AA  VKRTTE+AAEEVKDKAVSAA+EVTQ+TK+VAGKVSETAQDMAGK
Sbjct: 39  GSSQVTAAAADEAAHVVKRTTERAAEEVKDKAVSAADEVTQRTKEVAGKVSETAQDMAGK 98

Query: 61  AKQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 109
           AKQTVEDAWGSVKDTTQNIK+KVVGKAEESKEAIKDTAENIK NIKSNC
Sbjct: 99  AKQTVEDAWGSVKDTTQNIKQKVVGKAEESKEAIKDTAENIKKNIKSNC 147

BLAST of MELO3C021004 vs. ExPASy TrEMBL
Match: A0A6J1DGG7 (uncharacterized protein At4g13230 OS=Momordica charantia OX=3673 GN=LOC111020221 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.3e-37
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 0

Query: 6   SAAADGAAQAVKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKAKQTVE 65
           +AAADGAAQ VKR TEKAAEEVKDKA SAAEEVTQKTK+VAGKVSETAQD+AGKAKQTV+
Sbjct: 47  AAAADGAAQGVKRATEKAAEEVKDKASSAAEEVTQKTKEVAGKVSETAQDLAGKAKQTVQ 106

Query: 66  DAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKSNC 109
           +AWGSVKDTTQNIKEKVVGKAEESKEAIKDTA+NIK+ IKSNC
Sbjct: 107 EAWGSVKDTTQNIKEKVVGKAEESKEAIKDTADNIKDKIKSNC 149

BLAST of MELO3C021004 vs. ExPASy TrEMBL
Match: A0A1Q3BS03 (Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_14160 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 66/106 (62.26%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 4   QVSAAADGAAQAVKR---TTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKA 63
           + S+A D A QA K+     +K  E+VKDKA S AE+VT+K +D A KV ETAQD+  KA
Sbjct: 31  EASSACDKATQAAKQGANEAKKTCEDVKDKAASNAEQVTKKAEDAADKVKETAQDLTQKA 90

Query: 64  KQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKS 107
           KQTV+DAWGSVKDTT  IK+ VVGKAEESKE+IK+TAEN+K N+K+
Sbjct: 91  KQTVQDAWGSVKDTTTKIKDTVVGKAEESKESIKETAENVKRNVKN 136

BLAST of MELO3C021004 vs. ExPASy TrEMBL
Match: A0A5B7AK94 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_024954 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.8e-20
Identity = 63/107 (58.88%), Postives = 84/107 (78.50%), Query Frame = 0

Query: 3   SQVSAAADGAAQAVKR---TTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGK 62
           ++ + AA+  A A K+     +K  +++K+KA S AE+VT K+KDVAGKVSETAQD+A K
Sbjct: 68  NKAADAANQGADAAKQGAHEAKKVGQDMKNKAASTAEDVTHKSKDVAGKVSETAQDLAEK 127

Query: 63  AKQTVEDAWGSVKDTTQNIKEKVVGKAEESKEAIKDTAENIKNNIKS 107
           AKQT +DAWGSVKDTTQ IKE V GKAEESK++IKD+AEN+K ++ +
Sbjct: 128 AKQTAQDAWGSVKDTTQKIKETVAGKAEESKDSIKDSAENVKRSMNT 174

BLAST of MELO3C021004 vs. TAIR 10
Match: AT4G13230.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 63.9 bits (154), Expect = 8.9e-11
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 16  VKRTTEKAAEEVKDKAVSAAEEVTQKTKDVAGKVSETAQDMAGKAKQTVEDAWGSVKDTT 75
           V  TT    + V DKA  A ++V +K  + A  +S+ A ++  KAK T E+AW  VKDTT
Sbjct: 26  VHGTTSTRKDSVCDKATEAQQKVAKKADEGAQTISDAAGNLKDKAKNTAEEAWDKVKDTT 85

Query: 76  QNIKEKVVGKAEESKEAIKDTAENIKNNIKS 107
           + IK+ V GK EE+KE+IK TA+ ++ ++ +
Sbjct: 86  EKIKDTVTGKTEETKESIKATAKTVERSMNT 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008457975.13.4e-44100.00PREDICTED: uncharacterized protein At4g13230 [Cucumis melo][more]
XP_011659168.16.1e-3889.91uncharacterized protein At4g13230 [Cucumis sativus] >KGN44571.1 hypothetical pro... [more]
XP_038897424.15.2e-3785.98uncharacterized protein At4g13230 [Benincasa hispida][more]
XP_022152517.11.5e-3689.32uncharacterized protein At4g13230 [Momordica charantia][more]
GAV70662.13.1e-2162.26hypothetical protein CFOL_v3_14160, partial [Cephalotus follicularis][more]
Match NameE-valueIdentityDescription
Q8LFD51.3e-0941.76Uncharacterized protein At4g13230 OS=Arabidopsis thaliana OX=3702 GN=At4g13230 P... [more]
Match NameE-valueIdentityDescription
A0A1S3C7D41.6e-44100.00uncharacterized protein At4g13230 OS=Cucumis melo OX=3656 GN=LOC103497533 PE=4 S... [more]
A0A0A0K9U43.0e-3889.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336500 PE=4 SV=1[more]
A0A6J1DGG77.3e-3789.32uncharacterized protein At4g13230 OS=Momordica charantia OX=3673 GN=LOC111020221... [more]
A0A1Q3BS031.5e-2162.26Uncharacterized protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3... [more]
A0A5B7AK944.8e-2058.88Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_024954... [more]
Match NameE-valueIdentityDescription
AT4G13230.18.9e-1141.76Late embryogenesis abundant protein (LEA) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 83..103
NoneNo IPR availableCOILSCoilCoilcoord: 17..37
NoneNo IPR availableGENE3D1.20.120.20Apolipoproteincoord: 2..108
e-value: 6.0E-12
score: 47.6
NoneNo IPR availablePANTHERPTHR47372:SF21LATE EMBRYOGENESIS ABUNDANT PROTEIN, GROUP 3-LIKEcoord: 4..106
NoneNo IPR availablePANTHERPTHR47372DAUER UP-REGULATED-RELATEDcoord: 4..106
NoneNo IPR availableSUPERFAMILY58113Apolipoprotein A-Icoord: 14..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C021004.1MELO3C021004.1mRNA