MELO3C020970 (gene) Melon (DHL92) v4

Overview


Name	MELO3C020970
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Root meristem growth factor 9-like protein
Location	chr11: 2390138 .. 2391466 (-)
RNA-Seq Expression	MELO3C020970
Synteny	MELO3C020970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACATACAAAAACCAAAGCTTCCTTTTTGTCATCACAATAACAAAATCAAACACAAAAGATCCTTCCAAATGGCTATGCTTCCATGCAAACGCATTCTTATACTCTTCCTCCTCATCCTCATCCTTCTTTCTTGTTTCTCAAACACAGCTATAGGTATAGACTTTTCTATCTAATAGTGTCTTTTCTTTTTCTCTTCATTTTTATGTTTTAGGTTATGGGTTAAACAACCATGTTAACTAATTGATTACCACAATTCAAATCGATTTTTGTTTATTTATTTCTTCTCTAGTTGTGTTTTGAGTTTAAAAATTGGATCATATATTTGATAAGTTATGATCATAAATTGAAATATATTTTACCTTATCTTGAATTGTTCATATCAGGTAGATGTGTGTGTATATATATATATATATTTTGGTAGGTTTGTGACAAACATAGATACGTTCAAACATGACAACATTATATGTTTCTTGATGCTTATTTTGTAAGCTTAATGAGACTATGGAAGTATCTCCAACCAAAACAAGAAATATATATATATATATAAATAGTATTTCTAAAGAAGCTTTCTAACCAGAAAAAGAAAAAAAGAACAAGAAATTAAAGTCGTCTCTAGATATAATTTAATGTTGTTTTGAATGAAGAATTTCAAATGACTTCGAAGTATGTCTGTTATTGCAAGAAAGAGAATAGTTTCAAAAAAAAATATGAAAGTCATTTTAAATCTTACTAAAATGACCTGATTTCAAAGATTTTATAAGATTTAGGGATAAGTACTTGTTAACATTCTCATTTTTCTAATCTTAAACGATCTAATCATTAATTTCAAATCTTTTTCATTCTAAAGGGGAGATAACTTCGAGCTAAATATTATCCAAAAGAACAAGAGAAAAGAAAACCCATATGTACACTTGAATAAGTTCAATTCTATACCAAAATCATAAAATAAAAACTCATTTTACAAAGCTTTCCTAGATCTCTTTGGAAACCCAAATTTTATATACAAATTGAAGTTGGACTGAGACTGTTACTGATGGGATTTCCTTCTATTGATTTCTTTGTGATTGCAGCAGCAAGAAGTGTGGGAGTTGCTGAGATGAAAAATGAGATCAGTCAAAGAGAGAAAGTAATTAATATCAATGATGATGTTAATAAAGTTCATAATAATAATGATGAAGAACATTACTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAGAGAATTTTATTTAATTTGTATACGAACACTCAAAATTATTCCAAAAACACTTTTGTTTCATTATTAT

mRNA sequence

CTTCACATACAAAAACCAAAGCTTCCTTTTTGTCATCACAATAACAAAATCAAACACAAAAGATCCTTCCAAATGGCTATGCTTCCATGCAAACGCATTCTTATACTCTTCCTCCTCATCCTCATCCTTCTTTCTTGTTTCTCAAACACAGCTATAGCAGCAAGAAGTGTGGGAGTTGCTGAGATGAAAAATGAGATCAGTCAAAGAGAGAAAGTAATTAATATCAATGATGATGTTAATAAAGTTCATAATAATAATGATGAAGAACATTACTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAGAGAATTTTATTTAATTTGTATACGAACACTCAAAATTATTCCAAAAACACTTTTGTTTCATTATTAT

Coding sequence (CDS)

ATGGCTATGCTTCCATGCAAACGCATTCTTATACTCTTCCTCCTCATCCTCATCCTTCTTTCTTGTTTCTCAAACACAGCTATAGCAGCAAGAAGTGTGGGAGTTGCTGAGATGAAAAATGAGATCAGTCAAAGAGAGAAAGTAATTAATATCAATGATGATGTTAATAAAGTTCATAATAATAATGATGAAGAACATTACTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

Protein sequence

MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHNNNDEEHYFSSTDDLGAMDYTPASKKPPIHN

Homology

[Close]

BLAST of MELO3C020970 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 7.9e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60
          MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 91
          NNDEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of MELO3C020970 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 2.3e-30
Identity = 79/90 (87.78%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60
          MAMLPCKRIL LF+LIL+LL CFSN AIAARSVGVAEMKNE SQ EKVIN+NDD  KVH 
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNE-SQNEKVINMNDDAYKVH- 60

Query: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 91
          NNDEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of MELO3C020970 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 3  MLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHNNN 62
          M PCKR++++ L++L+LL CFSNTAI ARS+GV     +I + +  + ++ D+N      
Sbjct: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVG--VPQIKKDDHSLKVDGDLNV----- 60

Query: 63 DEEHYFSSTDDLGAMDYTPASKKPPIHN 91
          D+E +F ST DL AMDYT ASKKPPIHN
Sbjct: 61 DDEEHFMSTVDLVAMDYTQASKKPPIHN 81

[Close]

BLAST of MELO3C020970 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 4.5e-10
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 7  KRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHNNNDEEH 66
          KR+L+   L+L+LL  FSN  IA RS+GV ++K +    +  +  NDD+  VH    EE 
Sbjct: 5  KRVLV---LVLVLLCSFSNKVIATRSLGVPQIKKD----DHKLKGNDDL-AVH----EEE 64

Query: 67 YFSSTDDLGAMDYTPASKKPPIHN 91
          +FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 65 HFSSTDDLGAMDYTPASKKPPIHN 76

[Close]

BLAST of MELO3C020970 vs. ExPASy TrEMBL
Match: A0A5A7TWX6 (Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002040 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60
          MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 91
          NNDEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of MELO3C020970 vs. ExPASy TrEMBL
Match: A0A0A0LMV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 79/90 (87.78%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60
          MAMLPCKRIL LF+LIL+LL CFSN AIAARSVGVAEMKNE SQ EKVIN+NDD  KVH 
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNE-SQNEKVINMNDDAYKVH- 60

Query: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 91
          NNDEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 88

The following BLAST results are available for this feature:

BLAST of MELO3C020970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045905.1	7.9e-39	100.00	Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684...	[more]
KGN62102.1	2.3e-30	87.78	hypothetical protein Csa_006036 [Cucumis sativus]	[more]
KAG6605281.1	1.6e-10	51.14	hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571377.1	4.5e-10	55.95	hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MELO3C020970 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C020970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWX6	3.8e-39	100.00	Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0LMV6	1.1e-30	87.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1	[more]

BLAST of MELO3C020970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..90
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 1..90
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..22 score: 5.0
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020970.1	MELO3C020970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008083	growth factor activity