MELO3C020843.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C020843.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionVQ domain-containing protein
Locationchr11: 2747962 .. 2748722 (-)
RNA-Seq ExpressionMELO3C020843.jh1
SyntenyMELO3C020843.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTTAAAAACAACAAAAAAAGAAAAGAAAACTAAATCTCAGGTTTTTCTTATATCCAAAAATGGAACCTCACTCTTTTTCCTTTTACTACACGGATCAGGGGGCGTCAGTTCAGAAGACGGGGAAGAAGGCTGTGGCGCCTCCGCGGCCCACCCCACCGCAGGTTTATAAGGTGGACCCGATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTGAGTTTCAGGATCGTCGTCTTCAAGCCATGCCGCCTCCACGGCCTAATGTTGCCGATCAGTCCCGACGACCTCGGGATTCGTCTGGGGAGGGAGAGGGTGGCGTCGTTTCTTACCTGGCTTTTTCTTGGGACAGTCCTCCGAGAGATATTAGCTGAATTCTTGGAGTTTTCATGTTATTTTTATCTTCTCTTCCTTTCTTTCTTAATACTTAGATAGTTACCCATAAGTTTTTCTCTTTTACTTTCCATTCAATTCTAATTTCTATACTTTCAATAAAATTTCAAAATTTATAATTTTTTAAGTTAATTCTCATGTAATTATGGAAATACAAAATATACGAGAATAACCCATTTTAATAGCCGTTGAGGATAACCCATTTTAGACGGGACTATTAGAAAATAATTAAAAGGGTTGTTTCCAAATTTTACTCAATTTTCTCTTCTTTCTTTCATTCCCCTCTTAAGTTTCAAAAATCCTTTCTACGAGAAAATTCAGATCGTCGTAATATCTTACCCACTAAAAGTAACAAAATGCTA

mRNA sequence

AAATTTAAAAACAACAAAAAAAGAAAAGAAAACTAAATCTCAGGTTTTTCTTATATCCAAAAATGGAACCTCACTCTTTTTCCTTTTACTACACGGATCAGGGGGCGTCAGTTCAGAAGACGGGGAAGAAGGCTGTGGCGCCTCCGCGGCCCACCCCACCGCAGGTTTATAAGGTGGACCCGATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTGAGTTTCAGGATCGTCGTCTTCAAGCCATGCCGCCTCCACGGCCTAATGTTGCCGATCAGTCCCGACGACCTCGGGATTCGTCTGGGGAGGGAGAGGGTGGCGTCGTTTCTTACCTGGCTTTTTCTTGGGACAGTCCTCCGAGAGATATTAGCTGAATTCTTGGAGTTTTCATGTTATTTTTATCTTCTCTTCCTTTCTTTCTTAATACTTAGATAGTTACCCATAAGTTTTTCTCTTTTACTTTCCATTCAATTCTAATTTCTATACTTTCAATAAAATTTCAAAATTTATAATTTTTTAAGTTAATTCTCATGTAATTATGGAAATACAAAATATACGAGAATAACCCATTTTAATAGCCGTTGAGGATAACCCATTTTAGACGGGACTATTAGAAAATAATTAAAAGGGTTGTTTCCAAATTTTACTCAATTTTCTCTTCTTTCTTTCATTCCCCTCTTAAGTTTCAAAAATCCTTTCTACGAGAAAATTCAGATCGTCGTAATATCTTACCCACTAAAAGTAACAAAATGCTA

Coding sequence (CDS)

ATGGAACCTCACTCTTTTTCCTTTTACTACACGGATCAGGGGGCGTCAGTTCAGAAGACGGGGAAGAAGGCTGTGGCGCCTCCGCGGCCCACCCCACCGCAGGTTTATAAGGTGGACCCGATCAACTTCCGGGATGTTGTTCAGAAGCTAACTGCAGCTCCTGAGTTTCAGGATCGTCGTCTTCAAGCCATGCCGCCTCCACGGCCTAATGTTGCCGATCAGTCCCGACGACCTCGGGATTCGTCTGGGGAGGGAGAGGGTGGCGTCGTTTCTTACCTGGCTTTTTCTTGGGACAGTCCTCCGAGAGATATTAGCTGA

Protein sequence

MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYLAFSWDSPPRDIS
Homology
BLAST of MELO3C020843.jh1 vs. NCBI nr
Match: KAA0045761.1 (VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (483), Expect = 1.31e-60
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
          MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR
Sbjct: 1  MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61 LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYLAF 95
          LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSY  F
Sbjct: 61 LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYHGF 95

BLAST of MELO3C020843.jh1 vs. NCBI nr
Match: KAE8651906.1 (hypothetical protein Csa_006780 [Cucumis sativus])

HSP 1 Score: 163 bits (413), Expect = 5.14e-50
Identity = 79/88 (89.77%), Postives = 83/88 (94.32%), Query Frame = 0

Query: 1  MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
          MEPHSFSFYY DQGA VQKTGKK VAPPRP+PPQVYKVDPINFRDVVQKLTAAP+FQDRR
Sbjct: 1  MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60

Query: 61 LQAMPPPRPNVADQSRRPRDSSGEGEGG 88
          LQAMPPPRP++ADQS RPRD SGEGEGG
Sbjct: 61 LQAMPPPRPDLADQSSRPRDLSGEGEGG 88

BLAST of MELO3C020843.jh1 vs. NCBI nr
Match: XP_022149539.1 (VQ motif-containing protein 29 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 8.55e-23
Identity = 54/95 (56.84%), Postives = 62/95 (65.26%), Query Frame = 0

Query: 1  MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
          MEPHS S       +   K   +AVAP  PTPPQ+YKV+P++FRDVVQKLTAAPEFQDRR
Sbjct: 1  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRR 60

Query: 61 LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYLAF 95
          LQAMP PRP+    S    D SGEG    V Y  +
Sbjct: 61 LQAMPAPRPSPPPGSAACTDFSGEG---AVIYYGY 86

BLAST of MELO3C020843.jh1 vs. NCBI nr
Match: KAG6605217.1 (hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.5 bits (223), Expect = 3.59e-21
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 0

Query: 1  MEPHS-------FSFYYTDQGA---SVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKL 60
          MEPHS       FSFYY+D      +  ++ KKAVAPP P PP+VYKV+PI FRDVVQKL
Sbjct: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60

Query: 61 TAAPEFQDRRLQAMPPPRPNVAD 73
          T+ PE+ D RL+AMP PRPN+++
Sbjct: 61 TSPPEYLDPRLKAMPAPRPNLSN 83

BLAST of MELO3C020843.jh1 vs. NCBI nr
Match: KAA8522582.1 (hypothetical protein F0562_013057 [Nyssa sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.88e-13
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 19  KTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRPNVA 72
           K  KK +AP  PTPP++YKVD +NFR+VVQKLTAAPEFQ RRLQ++ PP  N++
Sbjct: 49  KPWKKPIAPLPPTPPRIYKVDSVNFREVVQKLTAAPEFQSRRLQSVAPPPLNLS 102

BLAST of MELO3C020843.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TW54 (VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00880 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 6.33e-61
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
          MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR
Sbjct: 1  MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61 LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYLAF 95
          LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSY  F
Sbjct: 61 LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYHGF 95

BLAST of MELO3C020843.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LPS3 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 1.28e-41
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0

Query: 12 DQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRPNV 71
          DQGA VQKTGKK VAPPRP+PPQVYKVDPINFRDVVQKLTAAP+FQDRRLQAMPPPRP++
Sbjct: 2  DQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDL 61

Query: 72 ADQSRRPRDSSGEGEGG 88
          ADQS RPRD SGEGEGG
Sbjct: 62 ADQSSRPRDLSGEGEGG 78

BLAST of MELO3C020843.jh1 vs. ExPASy TrEMBL
Match: A0A6J1D7B4 (VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.14e-23
Identity = 54/95 (56.84%), Postives = 62/95 (65.26%), Query Frame = 0

Query: 1  MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60
          MEPHS S       +   K   +AVAP  PTPPQ+YKV+P++FRDVVQKLTAAPEFQDRR
Sbjct: 1  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRR 60

Query: 61 LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYLAF 95
          LQAMP PRP+    S    D SGEG    V Y  +
Sbjct: 61 LQAMPAPRPSPPPGSAACTDFSGEG---AVIYYGY 86

BLAST of MELO3C020843.jh1 vs. ExPASy TrEMBL
Match: A0A5J4ZYQ3 (VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.11e-14
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 0

Query: 19  KTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRRLQAMPPPRPNVA 72
           K  KK +AP  PTPP++YKVD +NFR+VVQKLTAAPEFQ RRLQ++ PP  N++
Sbjct: 49  KPWKKPIAPLPPTPPRIYKVDSVNFREVVQKLTAAPEFQSRRLQSVAPPPLNLS 102

BLAST of MELO3C020843.jh1 vs. ExPASy TrEMBL
Match: A0A7N2R6U6 (VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.97e-13
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 3   PHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDR-RL 62
           PH F+        +  K  KK VAP  PTPP++YKVDPINFRD+VQKLT A EFQ + RL
Sbjct: 27  PHPFNSSLHTVKKTPTKPWKKPVAPLPPTPPRIYKVDPINFRDLVQKLTGATEFQSKQRL 86

Query: 63  QAMPPPRPNVADQSR 76
           Q++ PP  NVA+ ++
Sbjct: 87  QSVAPPPLNVANSTQ 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0045761.11.31e-6097.89VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-c... [more]
KAE8651906.15.14e-5089.77hypothetical protein Csa_006780 [Cucumis sativus][more]
XP_022149539.18.55e-2356.84VQ motif-containing protein 29 [Momordica charantia][more]
KAG6605217.13.59e-2157.83hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA8522582.11.88e-1364.81hypothetical protein F0562_013057 [Nyssa sinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TW546.33e-6197.89VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0LPS31.28e-4189.61VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=... [more]
A0A6J1D7B44.14e-2356.84VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE... [more]
A0A5J4ZYQ39.11e-1464.81VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV... [more]
A0A7N2R6U61.97e-1353.33VQ domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 31..51
e-value: 9.2E-9
score: 34.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availablePANTHERPTHR34794:SF1EXPRESSED PROTEINcoord: 18..76
IPR039610VQ motif-containing protein 29PANTHERPTHR34794EXPRESSED PROTEINcoord: 18..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020843.jh1.t1MELO3C020843.jh1.t1mRNA