MELO3C020712.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C020712.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	ribosomal RNA processing protein 1 homolog
Location	chr12: 3039468 .. 3040054 (+)
RNA-Seq Expression	MELO3C020712.jh1
Synteny	MELO3C020712.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGGTGGTTGAAGGAGATCAAAATTTCACTTCATTAGTCATGCTTTTGGCATTCTTCAACAAGGCGACTCGAGACAAGACCCTTCGTGTAATCATTAAGATATGGCTTCCAACTCAAATGAGCCTTTTCGTAGGCGATATGAAAAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCATACCAACAAGGTTCCTGTTCAATCTAAGATTATTAATCGTCTTGCTTCTCTACTCCTCCATCTTAACCTATCGTTCACTTTTCAATACTTCTCTGTTTTCTTGTCACTCTGCATTGTGAATGGGTCGAGATTGATGCACTTAGGTTAGATAAGTTTTATCTTTTGATTCGTAGGTTTGTGCACCAATTTTTTGCTTCGTTGAAGAAGCATTCTTGGGATTTGGAACTGTGTTGTCGCTTGGTTCAAGTTTTGGAGGAAAGGGTGTTTTTCACTAATGATAAGTTTCATGGGAATGGTGTTAGTTATCAAATTGCTTCTGTGTTTCTTAAGGAACTTAGGCATTTCTTCCCCTTTGGAAGAAAATTGTCGATGTCCTGTTCAAGCCATTCCTTCTTTCAATGA

mRNA sequence

ATGGAGGAGGTGGTTGAAGGAGATCAAAATTTCACTTCATTAGTCATGCTTTTGGCATTCTTCAACAAGGCGACTCGAGACAAGACCCTTCGTGTAATCATTAAGATATGGCTTCCAACTCAAATGAGCCTTTTCGTAGGCGATATGAAAAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCATACCAACAAGGTTCCTGTTCAATCTAAGATTATTAATCGTCTTGCTTCTCTACTCCTCCATCTTAACCTATCGTTCACTTTTCAATACTTCTCTGTTTTCTTGTCACTCTGCATTGTGAATGGGTCGAGATTGATGCACTTAGGTTAGATAAGTTTTATCTTTTGATTCGTAGGTTTGTGCACCAATTTTTTGCTTCGTTGAAGAAGCATTCTTGGGATTTGGAACTGTGTTGTCGCTTGGTTCAAGTTTTGGAGGAAAGGGTGTTTTTCACTAATGATAAGTTTCATGGGAATGGTGTTAGTTATCAAATTGCTTCTGTGTTTCTTAAGGAACTTAGGCATTTCTTCCCCTTTGGAAGAAAATTGTCGATGTCCTGTTCAAGCCATTCCTTCTTTCAATGA

Coding sequence (CDS)

ATGGAGGAGGTGGTTGAAGGAGATCAAAATTTCACTTCATTAGTCATGCTTTTGGCATTCTTCAACAAGGCGACTCGAGACAAGACCCTTCGTGTAATCATTAAGATATGGCTTCCAACTCAAATGAGCCTTTTCGTAGGCGATATGAAAAAGCTTTGGAAGGGTTTGTTCTACTGTGTTTGGCATACCAACAAGGTTCCTGTTCAATCTAAGATTATTAATCGTCTTGCTTCTCTACTCCTCCATCTTAACCTATCGTTCACTTTTCAATACTTCTCTGTTTTCTTGTCACTCTGCATTGTGAATGGGTCGAGATTGATGCACTTAGGTTAG

Protein sequence

MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCVWHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFLSLCIVNGSRLMHLG

Homology

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BLAST of MELO3C020712.jh1 vs. NCBI nr
Match: XP_008457582.1 (PREDICTED: ribosomal RNA processing protein 1 homolog A-like [Cucumis melo] >ADN34242.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0033932.1 ribosomal RNA processing protein 1-like protein B isoform X2 [Cucumis melo var. makuwa] >TYK02896.1 ribosomal RNA processing protein 1-like protein B isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (474), Expect = 7.41e-58
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQ SLFVGDMKKLW GLFYCV
Sbjct: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQTSLFVGDMKKLWNGLFYCV 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WHTNKVPVQSKIINRLASLLLHLNL FTFQYFSVFL
Sbjct: 61 WHTNKVPVQSKIINRLASLLLHLNLLFTFQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. NCBI nr
Match: KAE8651686.1 (hypothetical protein Csa_006341 [Cucumis sativus])

HSP 1 Score: 160 bits (404), Expect = 5.09e-45
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1  MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WH +KVPVQS++INRLASLLLHL+LS   QYFSVFL
Sbjct: 61 WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. NCBI nr
Match: XP_004150388.1 (ribosomal RNA processing protein 1 homolog [Cucumis sativus])

HSP 1 Score: 160 bits (404), Expect = 9.62e-44
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1  MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WH +KVPVQS++INRLASLLLHL+LS   QYFSVFL
Sbjct: 61 WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. NCBI nr
Match: XP_008450828.1 (PREDICTED: ribosomal RNA processing protein 1 homolog [Cucumis melo] >KAA0047556.1 ribosomal RNA processing protein 1-like protein [Cucumis melo var. makuwa] >TYK14953.1 ribosomal RNA processing protein 1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 160 bits (404), Expect = 9.62e-44
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1  MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WH +KVPVQS++INRLASLLLHL+LS   QYFSVFL
Sbjct: 61 WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. NCBI nr
Match: XP_038875379.1 (ribosomal RNA processing protein 1 homolog [Benincasa hispida])

HSP 1 Score: 157 bits (398), Expect = 7.04e-43
Identity = 79/96 (82.29%), Postives = 84/96 (87.50%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYC+
Sbjct: 1  MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQKSLSDGDMKKLWKGLFYCI 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WH +KVPVQS++INRLASLLLHL+L    QYFSVFL
Sbjct: 61 WHADKVPVQSELINRLASLLLHLDLPLAVQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. ExPASy Swiss-Prot
Match: Q9Y7M6 (Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC9B6.07 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.6e-04
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 18 LAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCVWHTNKVPVQSKIINRLA 77
          LA  ++ TRDK L  + + +L  +      D  KLWKGLFYC+W  +K   Q K+ + LA
Sbjct: 11 LAANDRKTRDKALESLQR-FLSQKKKFERLDFLKLWKGLFYCMWMADKPLYQQKLSDNLA 70

Query: 78 SLL 81
          +L+
Sbjct: 71 ALV 72

[Close]

BLAST of MELO3C020712.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SRW1 (Ribosomal RNA processing protein 1-like protein B isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00390 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 3.59e-58
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQ SLFVGDMKKLW GLFYCV
Sbjct: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQTSLFVGDMKKLWNGLFYCV 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WHTNKVPVQSKIINRLASLLLHLNL FTFQYFSVFL
Sbjct: 61 WHTNKVPVQSKIINRLASLLLHLNLLFTFQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. ExPASy TrEMBL
Match: E5GCP3 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 3.59e-58
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQ SLFVGDMKKLW GLFYCV
Sbjct: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQTSLFVGDMKKLWNGLFYCV 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WHTNKVPVQSKIINRLASLLLHLNL FTFQYFSVFL
Sbjct: 61 WHTNKVPVQSKIINRLASLLLHLNLLFTFQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C5Z1 (ribosomal RNA processing protein 1 homolog A-like OS=Cucumis melo OX=3656 GN=LOC103497248 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 3.59e-58
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQ SLFVGDMKKLW GLFYCV
Sbjct: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQTSLFVGDMKKLWNGLFYCV 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WHTNKVPVQSKIINRLASLLLHLNL FTFQYFSVFL
Sbjct: 61 WHTNKVPVQSKIINRLASLLLHLNLLFTFQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U008 (Ribosomal RNA processing protein 1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00010 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 4.66e-44
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1  MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WH +KVPVQS++INRLASLLLHL+LS   QYFSVFL
Sbjct: 61 WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LGX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062650 PE=4 SV=1)

HSP 1 Score: 160 bits (404), Expect = 4.66e-44
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MEEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCV 60
          MEEVVEGDQNFTSLV LLA  NKATRDKTLRVIIK WLPTQ SL  GDMKKLWKGLFYCV
Sbjct: 1  MEEVVEGDQNFTSLVKLLASSNKATRDKTLRVIIKTWLPTQTSLSDGDMKKLWKGLFYCV 60

Query: 61 WHTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 96
          WH +KVPVQS++INRLASLLLHL+LS   QYFSVFL
Sbjct: 61 WHADKVPVQSELINRLASLLLHLDLSLAVQYFSVFL 96

[Close]

BLAST of MELO3C020712.jh1 vs. TAIR 10
Match: AT5G20600.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 5.9e-18
Identity = 41/95 (43.16%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 2   EEVVEGDQNFTSLVMLLAFFNKATRDKTLRVIIKIWLPTQMSLFVGDMKKLWKGLFYCVW 61
           E+ +  +++  SL+  LA   ++ RD++LR +++ WLP Q  +   DMKKLW+G+FYCVW
Sbjct: 11  EQALPIEEDCKSLIKKLASCKQSIRDRSLRTVLRTWLPEQTEISDEDMKKLWQGIFYCVW 70

Query: 62  HTNKVPVQSKIINRLASLLLHLNLSFTFQYFSVFL 97
           H +K   QS++I+RL+S L  L L  +  YF+VFL
Sbjct: 71  HADKSLYQSELIDRLSSALQSLPLPLSIHYFTVFL 105

The following BLAST results are available for this feature:

BLAST of MELO3C020712.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457582.1	7.41e-58	96.88	PREDICTED: ribosomal RNA processing protein 1 homolog A-like [Cucumis melo] >ADN...	[more]
KAE8651686.1	5.09e-45	84.38	hypothetical protein Csa_006341 [Cucumis sativus]	[more]
XP_004150388.1	9.62e-44	84.38	ribosomal RNA processing protein 1 homolog [Cucumis sativus]	[more]
XP_008450828.1	9.62e-44	84.38	PREDICTED: ribosomal RNA processing protein 1 homolog [Cucumis melo] >KAA0047556...	[more]
XP_038875379.1	7.04e-43	82.29	ribosomal RNA processing protein 1 homolog [Benincasa hispida]	[more]

BLAST of MELO3C020712.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y7M6	3.6e-04	39.68	Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain ...	[more]

BLAST of MELO3C020712.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRW1	3.59e-58	96.88	Ribosomal RNA processing protein 1-like protein B isoform X2 OS=Cucumis melo var...	[more]
E5GCP3	3.59e-58	96.88	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3C5Z1	3.59e-58	96.88	ribosomal RNA processing protein 1 homolog A-like OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5A7U008	4.66e-44	84.38	Ribosomal RNA processing protein 1-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0LGX3	4.66e-44	84.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G062650 PE=4 SV=1	[more]

BLAST of MELO3C020712.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20600.1	5.9e-18	43.16	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010301	Nucleolar, Nop52	PFAM	PF05997	Nop52	coord: 14..97 e-value: 3.7E-16 score: 59.6
IPR010301	Nucleolar, Nop52	PANTHER	PTHR13026	NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52	coord: 14..98
None	No IPR available	PANTHER	PTHR13026:SF0	RIBOSOMAL RNA-PROCESSING 1	coord: 14..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020712.jh1.t1	MELO3C020712.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0030688	preribosome, small subunit precursor