MELO3C020705 (gene) Melon (DHL92) v4

Overview


Name	MELO3C020705
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	cold-inducible RNA-binding protein B
Location	chr12: 2907089 .. 2908276 (+)
RNA-Seq Expression	MELO3C020705
Synteny	MELO3C020705

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACAGACTTGGCTCGGAGCTGTTCATCAGCAGTAGCTCTCTATCTCTTTCTCACACTCAAACATTTCATAAAAATGGTTTCTCCTCAAATTCTCCATTGATTGTGATTTTTCTTTTCTTTTCTTGCTCAGGACTATCATCATACACAACGATCGAACGACTTAAGAGTCTGTTTTCACCCTTCGGTTCAATCTCTCAAGGTACATATCTCCTCCTTAATCGGTTTTAGTTTCGACTTCTTTTCTCATCAATGGAAATTTCCAATTTCTTCAGCTCGGCTAATTCGTGATCCGGAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCAGTTGAGGCGAAGAAGGCTCTTCAAGCCATGGATGGCCGGGTATGTGTCCTCCACTGCTTATGCACATAACCTGTTCGACGAAATGTCTGACTGAGATTATATATCTTATTTACATTAGTCGCATCTGGAATATGGTTCTGTTTGAACTTTTTATTATTGGGAATTCATTTCAATTGGGTTTTGTGAAAAAATGCCTGCAATATGGATATCTATTGGGTTTGAGTAATATGAGCTTTCAACCAAGATGCTAGTTTTGGTAGCTAGTTTGGATTCATGGATTGTATTTCAAGCTGGGTCAATTGTTAAGGAGATTTATATAAGTTTTGTTCGGATAAATGATGCAGATTGTTGATGGAAGATTGATTTTCGTTGAATTTGCAAAGACTAGGAAACATGGGGTAGATCCTACATCTAGTTAAAGAACATCATTCACGAAAAGACATGGGGATTTGGATATTTGTGCCAGCTTCGGAGTTTAATCCATTTGCGATGTCACTATTAACAAGTCAGATCATTTTGAAAAAAAATAGTAAGATGACGATTGTAATGAGTCTAATGTTCTTATCTCTTCTAGGATAAATGTGTGTGATACTGATAATTTAACTAACTGTCGCCTAGGAATTTAAATCTTTAATTTTGATCTGGTGAACAATTTCATCTCCTAAACTTTTTTGGTTAAAAATTATATCTATGTGATAGTAGTGTTACGATAACATGTTCTTAGGAGAAGGATTACAATAGGGAGTGTTATGATATGTGTACTTGGAAAAAGAATTATAATAAGGAGTTCCAAGAATTATAATAAGGAGTGCTACGATATAATGTATTTGGAGAATAGATTA

mRNA sequence

ATGGCTAACAGACTTGGCTCGGAGCTGTTCATCAGCAGTAGCTCTCTATCTCTTTCTCACACTCAAACATTTCATAAAAATGGACTATCATCATACACAACGATCGAACGACTTAAGAGTCTGTTTTCACCCTTCGGTTCAATCTCTCAAGCTCGGCTAATTCGTGATCCGGAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCAGTTGAGGCGAAGAAGGCTCTTCAAGCCATGGATGGCCGGATTGTTGATGGAAGATTGATTTTCGTTGAATTTGCAAAGACTAGGAAACATGGGGTAGATCCTACATCTAGTTAAAGAACATCATTCACGAAAAGACATGGGGATTTGGATATTTGTGCCAGCTTCGGAGTTTAATCCATTTGCGATGTCACTATTAACAAGTCAGATCATTTTGAAAAAAAATAGTAAGATGACGATTGTAATGAGTCTAATGTTCTTATCTCTTCTAGGATAAATGTGTGTGATACTGATAATTTAACTAACTGTCGCCTAGGAATTTAAATCTTTAATTTTGATCTGGTGAACAATTTCATCTCCTAAACTTTTTTGGTTAAAAATTATATCTATGTGATAGTAGTGTTACGATAACATGTTCTTAGGAGAAGGATTACAATAGGGAGTGTTATGATATGTGTACTTGGAAAAAGAATTATAATAAGGAGTTCCAAGAATTATAATAAGGAGTGCTACGATATAATGTATTTGGAGAATAGATTA

Coding sequence (CDS)

ATGGCTAACAGACTTGGCTCGGAGCTGTTCATCAGCAGTAGCTCTCTATCTCTTTCTCACACTCAAACATTTCATAAAAATGGACTATCATCATACACAACGATCGAACGACTTAAGAGTCTGTTTTCACCCTTCGGTTCAATCTCTCAAGCTCGGCTAATTCGTGATCCGGAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCAGTTGAGGCGAAGAAGGCTCTTCAAGCCATGGATGGCCGGATTGTTGATGGAAGATTGATTTTCGTTGAATTTGCAAAGACTAGGAAACATGGGGTAGATCCTACATCTAGTTAA

Protein sequence

MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS

Homology

[Close]

BLAST of MELO3C020705 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-12
Identity = 35/71 (49.30%), Postives = 52/71 (73.24%), Query Frame = 0


Query: 28 GLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGRI 87
          GL+  T  E L+ +FS +G IS+  +++D ET+R +GFGFVTF++P +AK A+ AM+G+ 
Sbjct: 11 GLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKA 70

Query: 88 VDGRLIFVEFA 99
          VDGR I V+ A
Sbjct: 71 VDGRQIRVDQA 81

[Close]

BLAST of MELO3C020705 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-12
Identity = 33/71 (46.48%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 28 GLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGRI 87
          GL+  TT E L+ +FS +G +++  +++D E++R +GFGFVTF++P +AK A+ AM+G+ 
Sbjct: 12 GLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKS 71

Query: 88 VDGRLIFVEFA 99
          VDGR I V+ A
Sbjct: 72 VDGRQIRVDQA 82

[Close]

BLAST of MELO3C020705 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-12
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 5   LGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKG 64
           L ++   S  S S       + +GLS  TT + L+  F  FG++    ++ D    RPKG
Sbjct: 60  LSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKG 119

Query: 65  FGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTR 102
           F F+ +++  EA KA+Q M G+ +DGR+IFVE AKTR
Sbjct: 120 FAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of MELO3C020705 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-11
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 28 GLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGRI 87
          GLS  T  + L+ +FS +G IS+  +++D ETQR +GFGFVTF++  +AK A+ AM+G+ 
Sbjct: 12 GLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71

Query: 88 VDGRLIFVEFA 99
          VDGR I V+ A
Sbjct: 72 VDGRQIRVDQA 82

[Close]

BLAST of MELO3C020705 vs. ExPASy Swiss-Prot
Match: Q14011 (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-11
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 28 GLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGRI 87
          GLS  T  + L+ +FS +G IS+  +++D ETQR +GFGFVTF++  +AK A+ AM+G+ 
Sbjct: 12 GLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 71

Query: 88 VDGRLIFVEFA 99
          VDGR I V+ A
Sbjct: 72 VDGRQIRVDQA 82

[Close]

BLAST of MELO3C020705 vs. NCBI nr
Match: XP_008457543.1 (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-40
Identity = 94/110 (85.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MANRLGSELFIS                LSSYTTIERLKSLFSPFGSISQARLIRDPETQ
Sbjct: 1   MANRLGSELFISR---------------LSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 111
           RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS
Sbjct: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 95

[Close]

BLAST of MELO3C020705 vs. NCBI nr
Match: XP_004135289.2 (small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KAE8648688.1 hypothetical protein Csa_008079 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 3.1e-37
Identity = 86/110 (78.18%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MANRLGSELFIS                LSSYTT+ERLK+LFSPFGSIS+ARLIRDP+T+
Sbjct: 1   MANRLGSELFISR---------------LSSYTTLERLKNLFSPFGSISEARLIRDPKTE 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 111
           RPKGFGFVTFQSP EAKKAL+AMDGRIVDGRLIFVEFAKT KHGVDPTSS
Sbjct: 61  RPKGFGFVTFQSPAEAKKALKAMDGRIVDGRLIFVEFAKTEKHGVDPTSS 95

[Close]

BLAST of MELO3C020705 vs. NCBI nr
Match: XP_038895198.1 (small RNA-binding protein 11, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 1.7e-35
Identity = 83/109 (76.15%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MANR+GS+LFIS                LSSYTTIERL+SLFSPFGS+S+ARLIRDP+TQ
Sbjct: 12  MANRVGSQLFISR---------------LSSYTTIERLESLFSPFGSVSEARLIRDPKTQ 71

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 110
           RPKGFGFVTFQSPVEAKKALQAM+GRIVDGRLIFVEFAKTR+HGVD  S
Sbjct: 72  RPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGVDAAS 105

[Close]

BLAST of MELO3C020705 vs. NCBI nr
Match: XP_022949004.1 (cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 cold-inducible RNA-binding protein B-like [Cucurbita maxima])

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 82/109 (75.23%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MANRLG++LFIS                LSSYTTIERL++LFSPFGS+S+ARLIRDP+TQ
Sbjct: 1   MANRLGTQLFISR---------------LSSYTTIERLETLFSPFGSVSEARLIRDPKTQ 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 110
           RPKGFGFVTFQSP EAKKALQAMDGRIVDGRLIFVEFAKTR HGVD  S
Sbjct: 61  RPKGFGFVTFQSPDEAKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAAS 94

[Close]

BLAST of MELO3C020705 vs. NCBI nr
Match: KAG6607208.1 (Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036894.1 Cold-inducible RNA-binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.7 bits (387), Expect = 9.3e-34
Identity = 81/109 (74.31%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MANRLG++LFIS                LSSYTTIERL++LFSPFGS+S+ARLIRDP+TQ
Sbjct: 1   MANRLGTQLFISR---------------LSSYTTIERLETLFSPFGSVSEARLIRDPKTQ 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 110
           RPKGFGFVTFQSP EAKKALQAMDGRIVDGRLIFVEFAKT  HGVD  S
Sbjct: 61  RPKGFGFVTFQSPDEAKKALQAMDGRIVDGRLIFVEFAKTSGHGVDAAS 94

[Close]

BLAST of MELO3C020705 vs. ExPASy TrEMBL
Match: A0A1S3C5W5 (cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.5e-41
Identity = 94/110 (85.45%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MANRLGSELFIS                LSSYTTIERLKSLFSPFGSISQARLIRDPETQ
Sbjct: 1   MANRLGSELFISR---------------LSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 111
           RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS
Sbjct: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTSS 95

[Close]

BLAST of MELO3C020705 vs. ExPASy TrEMBL
Match: A0A6J1KF23 (cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111492665 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.1e-35
Identity = 82/109 (75.23%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MANRLG++LFIS                LSSYTTIERL++LFSPFGS+S+ARLIRDP+TQ
Sbjct: 1   MANRLGTQLFISR---------------LSSYTTIERLETLFSPFGSVSEARLIRDPKTQ 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 110
           RPKGFGFVTFQSP EAKKALQAMDGRIVDGRLIFVEFAKTR HGVD  S
Sbjct: 61  RPKGFGFVTFQSPDEAKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAAS 94

[Close]

BLAST of MELO3C020705 vs. ExPASy TrEMBL
Match: A0A6J1GBJ9 (cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111452474 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.1e-35
Identity = 82/109 (75.23%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MANRLG++LFIS                LSSYTTIERL++LFSPFGS+S+ARLIRDP+TQ
Sbjct: 1   MANRLGTQLFISR---------------LSSYTTIERLETLFSPFGSVSEARLIRDPKTQ 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 110
           RPKGFGFVTFQSP EAKKALQAMDGRIVDGRLIFVEFAKTR HGVD  S
Sbjct: 61  RPKGFGFVTFQSPDEAKKALQAMDGRIVDGRLIFVEFAKTRGHGVDAAS 94

[Close]

BLAST of MELO3C020705 vs. ExPASy TrEMBL
Match: A0A0A0KQ26 (Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.2e-32
Identity = 78/104 (75.00%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MANRLGSELFIS                LSSYTT+ERLK+LFSPFGSIS+ARLIRDP+T+
Sbjct: 1   MANRLGSELFISR---------------LSSYTTLERLKNLFSPFGSISEARLIRDPKTE 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHG 105
           RPKGFGFVTFQSP EAKKAL+AMDGRIVDGRLIFVEFAKT   G
Sbjct: 61  RPKGFGFVTFQSPAEAKKALKAMDGRIVDGRLIFVEFAKTGDMG 89

[Close]

BLAST of MELO3C020705 vs. ExPASy TrEMBL
Match: A0A6J1DM71 (small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111022472 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.8e-29
Identity = 71/105 (67.62%), Postives = 83/105 (79.05%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MAN +GS++FIS                LSSYTTIERLKSLFS FG++S+ARL+RDP+T 
Sbjct: 1   MANGVGSQVFISR---------------LSSYTTIERLKSLFSVFGAVSEARLVRDPKTH 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRKHGV 106
           RPKGFGFVTFQSPVEA+KA++AM+GRIVDGRLIFVEFA TR  GV
Sbjct: 61  RPKGFGFVTFQSPVEAEKAIRAMNGRIVDGRLIFVEFANTRGRGV 90

[Close]

BLAST of MELO3C020705 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-24
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1   MANRLGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 60
           MA R+ ++LF+S                LS+YTT + L+ LFSPFG I +ARLIRD ETQ
Sbjct: 1   MAKRISAQLFVSR---------------LSAYTTDQSLRQLFSPFGQIKEARLIRDSETQ 60

Query: 61  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAK 100
           RPKGFGF+TF S  +A+KAL+++DG+IVDGRLIFVE AK
Sbjct: 61  RPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84

[Close]

BLAST of MELO3C020705 vs. TAIR 10
Match: AT5G59860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-19
Identity = 45/73 (61.64%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 27  NGLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGR 86
           +GLS+YTT + L+ LF+PF     ARLI+D +TQRPKGFGF+TF+S  +A+KAL+A++G+
Sbjct: 76  SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 135

Query: 87  IVDGRLIFVEFAK 100
           IV+GRLIFVE AK
Sbjct: 136 IVNGRLIFVETAK 143

[Close]

BLAST of MELO3C020705 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-13
Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 0


Query: 5   LGSELFISSSSLSLSHTQTFHKNGLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKG 64
           L ++   S  S S       + +GLS  TT + L+  F  FG++    ++ D    RPKG
Sbjct: 60  LSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKG 119

Query: 65  FGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTR 102
           F F+ +++  EA KA+Q M G+ +DGR+IFVE AKTR
Sbjct: 120 FAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of MELO3C020705 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 40/102 (39.22%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 6   GSELFISSSSLSLSHTQTFHK-----NGLSSYTTIERLKSLFSPFGSISQARLIRDPETQ 65
           GS   +SS SL +    T        +GLS  TT E+L+  F+ FG +  AR+I D ++ 
Sbjct: 13  GSSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSG 72

Query: 66  RPKGFGFVTFQSPVEAKKALQAMDGRIVDGRLIFVEFAKTRK 103
           R KGFGFVT+ +  +A+KA   M+ + +DG +IFV+ A+ R+
Sbjct: 73  RSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPRE 114

[Close]

BLAST of MELO3C020705 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 28  GLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVEAKKALQAMDGRI 87
           GLS  TT + L   FS  G + +A+++ D  + R KGFGFVTF S  EA+KAL   +G+ 
Sbjct: 40  GLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQ 99

Query: 88  VDGRLIFVEFAKTRK 103
           ++GR IFV++AK ++
Sbjct: 100 LNGRTIFVDYAKAKQ 114

The following BLAST results are available for this feature:

BLAST of MELO3C020705 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9DED4	1.6e-12	49.30	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]
Q28IQ9	2.7e-12	46.48	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
Q9FX45	2.7e-12	39.18	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
P60826	1.0e-11	49.30	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]
Q14011	1.0e-11	49.30	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1	[more]

BLAST of MELO3C020705 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457543.1	1.8e-40	85.45	PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]	[more]
XP_004135289.2	3.1e-37	78.18	small RNA-binding protein 11, chloroplastic [Cucumis sativus] >KAE8648688.1 hypo...	[more]
XP_038895198.1	1.7e-35	76.15	small RNA-binding protein 11, chloroplastic-like [Benincasa hispida]	[more]
XP_022949004.1	1.9e-34	75.23	cold-inducible RNA-binding protein B-like [Cucurbita moschata] >XP_022997823.1 c...	[more]
KAG6607208.1	9.3e-34	74.31	Cold-inducible RNA-binding protein B, partial [Cucurbita argyrosperma subsp. sor...	[more]

BLAST of MELO3C020705 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5W5	8.5e-41	85.45	cold-inducible RNA-binding protein B OS=Cucumis melo OX=3656 GN=LOC103497209 PE=...	[more]
A0A6J1KF23	9.1e-35	75.23	cold-inducible RNA-binding protein B-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1GBJ9	9.1e-35	75.23	cold-inducible RNA-binding protein B-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A0A0KQ26	7.2e-32	75.00	Cold-inducible RNA binding protein OS=Cucumis sativus OX=3659 GN=Csa_5G593310 PE...	[more]
A0A6J1DM71	9.8e-29	67.62	small RNA-binding protein 11, chloroplastic OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of MELO3C020705 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46020.1	2.5e-24	56.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59860.1	3.1e-19	61.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.0e-13	39.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	1.3e-12	39.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	1.7e-12	45.33	RNA binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 23..96 e-value: 2.8E-20 score: 83.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 28..93 e-value: 1.1E-20 score: 73.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 22..100 score: 18.239782
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 13..105 e-value: 2.3E-26 score: 94.6
None	No IPR available	PANTHER	PTHR48034:SF6	TRANSFORMER-2 SEX-DETERMINING PROTEIN	coord: 27..102
None	No IPR available	PANTHER	PTHR48034	TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED	coord: 27..102
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 28..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020705.1	MELO3C020705.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding