MELO3C020687 (gene) Melon (DHL92) v4

Overview


Name	MELO3C020687
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr12: 2653546 .. 2654411 (+)
RNA-Seq Expression	MELO3C020687
Synteny	MELO3C020687

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAAAGTTACCTGGATGTAGTGTTCGAGCCACCACTTTAATAGTCTGCACAATTAAGACACTTAAGCGGACCTTCCAAGCTATCACAGAAATGCGTGAGCCAGCGTGCAGTGGGTTCAAATGGAACGATGAGGCAAAGTACATCATTGTCGAGAAGGAAGTGTTCGACAACTGGATTAGGGTAAGGAAACTAATCAAAGCGTGAAAATACTTGTGCATTGTACTTTTAGTTTAGATTTTTCGTATCGGTAGTTTGAAGTGGTCTTGTTTTTTATGCAGTCGCATCCTGCAGCGAAGAGCCTCCTTAACAAACTCTTTTCCTATTACGACGAACTTGCATATGTGTTCGAGTGGGATAGGGCGACGGGTCGCTTTGTAGAGACATTCGCCGACATTGGGTCTAATGAGCCTGCTGGGTATGAGGGGTTTGACATGTCAGATGGAAACGATATAGAGTTTCCATTTATGTACAGCCAGGGGATTGACATATCCCAAGATGATGTACGCACATCACAACCTGCTTGCACGTCAGACGGTAGGATCAGATCGAGCGAATCCAAGCGAAAGAGGGGAAGCCAACGGGAGGGTGAGCTTGATGTGATAAATATGGCCTTGAAGTGTATGAATGACCAACTCAGGACCATTATCGAGTGGCCTACGCGCCCCTTTGCCAATGAGACCTTTGTTCGCCAGGAATTCTTACGCCTATTGTGTGAGATGCCCGACCTAAGCAGTTTGGATAGGGAGTTGTGCCAAAGGCAGCTCATGTGTAGTATCGACGACATGCGTAGTTTCGTAGAGATGACTGACGAAGAGAGGAAGAACTTCTGTAGAGTCTTCTTACGAGATGTCTCGAGATAG

mRNA sequence

ATGGCAGAAAAGTTACCTGGATGTAGTGTTCGAGCCACCACTTTAATAGTCTGCACAATTAAGACACTTAAGCGGACCTTCCAAGCTATCACAGAAATGCGTGAGCCAGCGTGCAGTGGGTTCAAATGGAACGATGAGGCAAAGTACATCATTGTCGAGAAGGAAGTGTTCGACAACTGGATTAGGGTAAGGAAACTAATCAAAGCCGAAGAGCCTCCTTAACAAACTCTTTTCCTATTACGACGAACTTGCATATGTGTTCGAGTGGGATAGGGCGACGGGTCGCTTTGTAGAGACATTCGCCGACATTGGGTCTAATGAGCCTGCTGGGTATGAGGGGTTTGACATGTCAGATGGAAACGATATAGAGTTTCCATTTATGTACAGCCAGGGGATTGACATATCCCAAGATGATGTACGCACATCACAACCTGCTTGCACGTCAGACGGTAGGATCAGATCGAGCGAATCCAAGCGAAAGAGGGGAAGCCAACGGGAGGGTGAGCTTGATGTGATAAATATGGCCTTGAAGTGTATGAATGACCAACTCAGGACCATTATCGAGTGGCCTACGCGCCCCTTTGCCAATGAGACCTTTGTTCGCCAGGAATTCTTACGCCTATTGTGTGAGATGCCCGACCTAAGCAGTTTGGATAGGGAGTTGTGCCAAAGGCAGCTCATGTGTAGTATCGACGACATGCGTAGTTTCGTAGAGATGACTGACGAAGAGAGGAAGAACTTCTGTAGAGTCTTCTTACGAGATGTCTCGAGATAG

Coding sequence (CDS)

ATGTCAGATGGAAACGATATAGAGTTTCCATTTATGTACAGCCAGGGGATTGACATATCCCAAGATGATGTACGCACATCACAACCTGCTTGCACGTCAGACGGTAGGATCAGATCGAGCGAATCCAAGCGAAAGAGGGGAAGCCAACGGGAGGGTGAGCTTGATGTGATAAATATGGCCTTGAAGTGTATGAATGACCAACTCAGGACCATTATCGAGTGGCCTACGCGCCCCTTTGCCAATGAGACCTTTGTTCGCCAGGAATTCTTACGCCTATTGTGTGAGATGCCCGACCTAAGCAGTTTGGATAGGGAGTTGTGCCAAAGGCAGCTCATGTGTAGTATCGACGACATGCGTAGTTTCGTAGAGATGACTGACGAAGAGAGGAAGAACTTCTGTAGAGTCTTCTTACGAGATGTCTCGAGATAG

Protein sequence

MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMALKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRSFVEMTDEERKNFCRVFLRDVSR

Homology

[Close]

BLAST of MELO3C020687 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 286.6 bits (732), Expect = 1.2e-73
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           FVEMTDEERKNFCRVFLRDVSR
Sbjct: 351 FVEMTDEERKNFCRVFLRDVSR 372

[Close]

BLAST of MELO3C020687 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 2.0e-44
Identity = 95/142 (66.90%), Postives = 117/142 (82.39%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           M DGN+ EFP MYSQGID+SQ+DVR S+P+ TS GRIRSS SKRKR SQ++GE++VI+MA
Sbjct: 79  MLDGNE-EFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMA 138

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           ++C NDQLRTI EWP R  AN+T VRQE LRLL  MP+L+SLDR LCQR L+  +DDMR 
Sbjct: 139 IECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRG 198

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           F++M D+ER+NFCRV L D+SR
Sbjct: 199 FIQMIDDERQNFCRVLLGDISR 219

[Close]

BLAST of MELO3C020687 vs. NCBI nr
Match: KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 1.9e-42
Identity = 94/142 (66.20%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           MSDGN+ EF  +YSQGID+SQ+DV  SQPA TS+ R RSS  KRKRGSQ++GE+ VI+MA
Sbjct: 54  MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 113

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           LKCMNDQL+ I+EW  R  AN T V QEF+RLL EM +LS+LDR LCQR LM  +DDM  
Sbjct: 114 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 173

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           FV+MT++ER+NFCRV LRD SR
Sbjct: 174 FVQMTNDERQNFCRVLLRDFSR 194

[Close]

BLAST of MELO3C020687 vs. NCBI nr
Match: KAA0063862.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95514.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 4.7e-38
Identity = 85/142 (59.86%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           M DGN+ EFP +Y+QGID+S DDVRTSQP+CTS GR RSS SKRK+GSQR+ +++ I++A
Sbjct: 142 MGDGNE-EFPPVYNQGIDLSLDDVRTSQPSCTSKGRTRSSGSKRKKGSQRDFDVEAIHLA 201

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           L   N+QLR I EWP R  AN+  VR +F R+LCEMP+L+SLDR L QR L+  +DD+R 
Sbjct: 202 LDQTNEQLRQIAEWPARTLANDNHVRTKFFRILCEMPELTSLDRTLLQRHLLSRMDDLRG 261

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           FV M ++ER+ FCRV LRD++R
Sbjct: 262 FVLMPEDEREGFCRV-LRDITR 281

[Close]

BLAST of MELO3C020687 vs. NCBI nr
Match: KAA0067987.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 6.2e-38
Identity = 86/142 (60.56%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           M DGN  +FP +YSQGID+SQDDVR S+P+  S+GR RSS SKRKRGSQR+ EL+ I++A
Sbjct: 139 MGDGNK-DFPSVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELEAIHLA 198

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           L   N+QLR I EWPTR  AN+  VR EF R+L EMP+L+SLDR L QR L+  +DD+R 
Sbjct: 199 LDQTNEQLRQIAEWPTRNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRG 258

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           FV M ++ER+ FCRV LRD+ R
Sbjct: 259 FVLMLEDEREGFCRVLLRDIER 279

[Close]

BLAST of MELO3C020687 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 5.8e-74
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           FVEMTDEERKNFCRVFLRDVSR
Sbjct: 351 FVEMTDEERKNFCRVFLRDVSR 372

[Close]

BLAST of MELO3C020687 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 9.6e-45
Identity = 95/142 (66.90%), Postives = 117/142 (82.39%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           M DGN+ EFP MYSQGID+SQ+DVR S+P+ TS GRIRSS SKRKR SQ++GE++VI+MA
Sbjct: 79  MLDGNE-EFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMA 138

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           ++C NDQLRTI EWP R  AN+T VRQE LRLL  MP+L+SLDR LCQR L+  +DDMR 
Sbjct: 139 IECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRG 198

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           F++M D+ER+NFCRV L D+SR
Sbjct: 199 FIQMIDDERQNFCRVLLGDISR 219

[Close]

BLAST of MELO3C020687 vs. ExPASy TrEMBL
Match: A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 9.0e-43
Identity = 94/142 (66.20%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           MSDGN+ EF  +YSQGID+SQ+DV  SQPA TS+ R RSS  KRKRGSQ++GE+ VI+MA
Sbjct: 54  MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 113

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           LKCMNDQL+ I+EW  R  AN T V QEF+RLL EM +LS+LDR LCQR LM  +DDM  
Sbjct: 114 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 173

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           FV+MT++ER+NFCRV LRD SR
Sbjct: 174 FVQMTNDERQNFCRVLLRDFSR 194

[Close]

BLAST of MELO3C020687 vs. ExPASy TrEMBL
Match: A0A5D3B9A8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19391G00010 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.3e-38
Identity = 85/142 (59.86%), Postives = 111/142 (78.17%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           M DGN+ EFP +Y+QGID+S DDVRTSQP+CTS GR RSS SKRK+GSQR+ +++ I++A
Sbjct: 142 MGDGNE-EFPPVYNQGIDLSLDDVRTSQPSCTSKGRTRSSGSKRKKGSQRDFDVEAIHLA 201

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           L   N+QLR I EWP R  AN+  VR +F R+LCEMP+L+SLDR L QR L+  +DD+R 
Sbjct: 202 LDQTNEQLRQIAEWPARTLANDNHVRTKFFRILCEMPELTSLDRTLLQRHLLSRMDDLRG 261

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           FV M ++ER+ FCRV LRD++R
Sbjct: 262 FVLMPEDEREGFCRV-LRDITR 281

[Close]

BLAST of MELO3C020687 vs. ExPASy TrEMBL
Match: A0A5A7VL88 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001760 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 3.0e-38
Identity = 86/142 (60.56%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 60
           M DGN  +FP +YSQGID+SQDDVR S+P+  S+GR RSS SKRKRGSQR+ EL+ I++A
Sbjct: 139 MGDGNK-DFPSVYSQGIDLSQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFELEAIHLA 198

Query: 61  LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 120
           L   N+QLR I EWPTR  AN+  VR EF R+L EMP+L+SLDR L QR L+  +DD+R 
Sbjct: 199 LDQTNEQLRQIAEWPTRNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRG 258

Query: 121 FVEMTDEERKNFCRVFLRDVSR 143
           FV M ++ER+ FCRV LRD+ R
Sbjct: 259 FVLMLEDEREGFCRVLLRDIER 279

The following BLAST results are available for this feature:

BLAST of MELO3C020687 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C020687 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033884.1	1.2e-73	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p...	[more]
KAA0050190.1	2.0e-44	66.90	retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p...	[more]
KAA0050806.1	1.9e-42	66.20	retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p...	[more]
KAA0063862.1	4.7e-38	59.86	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95514.1 retrotransposon p...	[more]
KAA0067987.1	6.2e-38	60.56	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C020687 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQI7	5.8e-74	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U4I8	9.6e-45	66.90	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9D5	9.0e-43	66.20	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3B9A8	2.3e-38	59.86	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VL88	3.0e-38	60.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C020687 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020687.1	MELO3C020687.1	mRNA