MELO3C020682.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C020682.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionFlocculation protein FLO11-like
Locationchr12: 2615263 .. 2616107 (+)
RNA-Seq ExpressionMELO3C020682.jh1
SyntenyMELO3C020682.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACACCATCTTCTTCAACAAACCCTACTTCCAAACATAAAAGGTCCAAGATGATTTTGGCTCGCCATCCCTATCAACGTTTGCACCATACAAGTGAACTCCCACCTGTATCTTCTTCAAAATCTATCGAGGTTCTGCATGCTTAATGTACTTGTACACCAGCCTCAAGACGTCTCAAAACAACATTAAAATGCACCACAGCTACTGTCTCTTAGGTATCTCCTTCTGCCTGTAGTAGACCTGATTCTCAACGTAAACCTAGGGTCATCATCTCCAATTCTAAGTCCGAAGAAGATGTTGCTTCTGAACCTTCGTCTTTAGATGAAGGCAATTTTGTCTTTGATGTGCTCAAAGGAAAAGCCACTACCTTTGCATCTGCCACTCATGTCAAGAGCCCTACCACAGACAAGAAGTTCAAACCCTCCAACCAAAAAACTCAGAAGAACTGTACGACGAACTGTTTGGTTTGCCTTCCTCCAGTTTAGGTTTTTCTCCTTCTGGCAAGTTTCTATCTTCTGCTACTCTTTTGTCCTCTCAAGTTCCCCATTCGTCTGATGAACCTATTAATGATCTATTTGTTGAGTTTCATCATGTTCCTGCTCCCCATGGAGAAGGTACCTCCTATGCGCCCCTTGCTATTAATTCGTTACCTAAGTATGCACCATTGCAAACTATTACTACTCAAGAGCCTCTGCTTTCTACACCTACCTCATCTCATCACACTACTGCTTCTAAAACTACTACTCACTTCCCTAATCTGGTTCTATTCCGGTCCCTTCTGAAAATCTGCCTCACAAGATGTATCGGGCCCCTGCCACAACCAGAAAGTAATGACGACTAA

mRNA sequence

ATGTCGACACCATCTTCTTCAACAAACCCTACTTCCAAACATAAAAGGTCCAAGATGATTTTGGCTCGCCATCCCTATCAACGTTTGCACCATACAAGTGAACTCCCACCTGTATCTTCTTCAAAATCTATCGAGGTATCTCCTTCTGCCTGTAGTAGACCTGATTCTCAACGTAAACCTAGGGTCATCATCTCCAATTCTAAGTCCGAAGAAGATGTTGCTTCTGAACCTTCGTCTTTAGATGAAGGCAATTTTGTCTTTGATGTGCTCAAAGGAAAAGCCACTACCTTTGCATCTGCCACTCATGTCAAGAGCCCTACCACAGACAAGAAGTTCAAACCCTCCAACCAAAAAACTCAGAAGAACTCATGTTCCTGCTCCCCATGGAGAAGGTACCTCCTATGCGCCCCTTGCTATTAATTCGTTACCTAAGTATGCACCATTGCAAACTATTACTACTCAAGAGCCTCTGCTTTCTACACCTACCTCATCTCATCACACTACTGCTTCTAAAACTACTACTCACTTCCCTAATCTGGTTCTATTCCGGTCCCTTCTGAAAATCTGCCTCACAAGATGTATCGGGCCCCTGCCACAACCAGAAAGTAATGACGACTAA

Coding sequence (CDS)

ATGTCGACACCATCTTCTTCAACAAACCCTACTTCCAAACATAAAAGGTCCAAGATGATTTTGGCTCGCCATCCCTATCAACGTTTGCACCATACAAGTGAACTCCCACCTGTATCTTCTTCAAAATCTATCGAGGTATCTCCTTCTGCCTGTAGTAGACCTGATTCTCAACGTAAACCTAGGGTCATCATCTCCAATTCTAAGTCCGAAGAAGATGTTGCTTCTGAACCTTCGTCTTTAGATGAAGGCAATTTTGTCTTTGATGTGCTCAAAGGAAAAGCCACTACCTTTGCATCTGCCACTCATGTCAAGAGCCCTACCACAGACAAGAAGTTCAAACCCTCCAACCAAAAAACTCAGAAGAACTCATGTTCCTGCTCCCCATGGAGAAGGTACCTCCTATGCGCCCCTTGCTATTAA

Protein sequence

MSTPSSSTNPTSKHKRSKMILARHPYQRLHHTSELPPVSSSKSIEVSPSACSRPDSQRKPRVIISNSKSEEDVASEPSSLDEGNFVFDVLKGKATTFASATHVKSPTTDKKFKPSNQKTQKNSCSCSPWRRYLLCAPCY
Homology
BLAST of MELO3C020682.jh1 vs. NCBI nr
Match: KAA0033876.1 (uncharacterized protein E6C27_scaffold43059G00610 [Cucumis melo var. makuwa] >TYK01260.1 uncharacterized protein E5676_scaffold49G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (520), Expect = 1.62e-62
Identity = 111/123 (90.24%), Postives = 112/123 (91.06%), Query Frame = 0

Query: 1   MSTPSSSTNPTSKHKRSKMILARHPYQRLHHTSELPPVSSSKSIEVSPSACSRPDSQRKP 60
           MSTPSSS NPTSKHKR KMILARHPYQRL  TSELPP S SKSIEVSPSACSRPDSQRKP
Sbjct: 16  MSTPSSSPNPTSKHKRFKMILARHPYQRLRRTSELPPASCSKSIEVSPSACSRPDSQRKP 75

Query: 61  RVIISNSKSEEDVASEPSSLDEGNFVF-DVLKGKATTFASATHVKSPTTDKKFKPSNQKT 120
           RVIISNS+SEEDVASEPSSLDEGN V  DVLK KATTFASATHVKSPTTDKKFKP NQKT
Sbjct: 76  RVIISNSESEEDVASEPSSLDEGNVVLADVLKWKATTFASATHVKSPTTDKKFKPFNQKT 135

Query: 121 QKN 122
           QKN
Sbjct: 136 QKN 138

BLAST of MELO3C020682.jh1 vs. NCBI nr
Match: TYJ97943.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 6.77e-15
Identity = 63/143 (44.06%), Postives = 72/143 (50.35%), Query Frame = 0

Query: 1   MSTPSSSTNPTSKHKRSKMILARHPYQRLHHTSELP-PVSSSKS---------------- 60
           M TPSS TNPTSK KR KMILARHPY RL H SE+P P SS++S                
Sbjct: 1   MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60

Query: 61  ------------IEVSPSACSRPDSQRKPRVIISNSKSEEDVASEPSSLDEGNFVFD-VL 113
                         V P + S   SQRKPRVII +S+S E +  +  S DE N V   VL
Sbjct: 61  SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120

BLAST of MELO3C020682.jh1 vs. NCBI nr
Match: KAA0051667.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 6.83e-15
Identity = 63/143 (44.06%), Postives = 72/143 (50.35%), Query Frame = 0

Query: 1   MSTPSSSTNPTSKHKRSKMILARHPYQRLHHTSELP-PVSSSKS---------------- 60
           M TPSS TNPTSK KR KMILARHPY RL H SE+P P SS++S                
Sbjct: 1   MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60

Query: 61  ------------IEVSPSACSRPDSQRKPRVIISNSKSEEDVASEPSSLDEGNFVFD-VL 113
                         V P + S   SQRKPRVII +S+S E +  +  S DE N V   VL
Sbjct: 61  SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120

BLAST of MELO3C020682.jh1 vs. NCBI nr
Match: TYK11138.1 (uncharacterized protein E5676_scaffold66G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 5.68e-14
Identity = 61/135 (45.19%), Postives = 73/135 (54.07%), Query Frame = 0

Query: 1   MSTPSSSTNPTSKHKRSKMILARHPYQRLHHTSELPPVSSS-KSIE-------------- 60
           MS PS S NPTS  KR K+I   HPY+RL H S+LPP SSS KSIE              
Sbjct: 68  MSDPSFSANPTSIPKRYKIIHPCHPYRRLRHASDLPPTSSSSKSIEILYEQYATTPTSRT 127

Query: 61  --------------VSPSACSRPDSQRKPRVIISNSKSEEDVASEPSSLDEGNFVF-DVL 105
                         VS SA S+P SQRKP+VIIS+S+ EE V  E     E + +F +VL
Sbjct: 128 FKTPPNYSTTTISHVSRSATSKPYSQRKPKVIISDSELEEVVVVESVCSSEDHVIFANVL 187

BLAST of MELO3C020682.jh1 vs. NCBI nr
Match: KAA0040821.1 (hypothetical protein E6C27_scaffold333G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 1.62e-06
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 29  LHHTSELPPVSSSKSIEVSPSACSRPDSQRKPRVIISNSKSEEDVASEPSSLDEGNFVF- 88
           +HH +    +SS+ S         +P S+RKP+VIISNSK E+ +  E +S +E + V  
Sbjct: 1   MHHDNNFSGISSTTS---------KPGSRRKPKVIISNSKIEDTIDVESASFEEDHVVLA 60

Query: 89  DVLKGKATTFASATHVKSPT-TDKKFKPSNQK 118
           DVLK K T  +S  +V+S    DKK KPS  K
Sbjct: 61  DVLKRKTTASSSEINVRSQLENDKKLKPSKPK 83

BLAST of MELO3C020682.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SV86 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00470 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 7.84e-63
Identity = 111/123 (90.24%), Postives = 112/123 (91.06%), Query Frame = 0

Query: 1   MSTPSSSTNPTSKHKRSKMILARHPYQRLHHTSELPPVSSSKSIEVSPSACSRPDSQRKP 60
           MSTPSSS NPTSKHKR KMILARHPYQRL  TSELPP S SKSIEVSPSACSRPDSQRKP
Sbjct: 16  MSTPSSSPNPTSKHKRFKMILARHPYQRLRRTSELPPASCSKSIEVSPSACSRPDSQRKP 75

Query: 61  RVIISNSKSEEDVASEPSSLDEGNFVF-DVLKGKATTFASATHVKSPTTDKKFKPSNQKT 120
           RVIISNS+SEEDVASEPSSLDEGN V  DVLK KATTFASATHVKSPTTDKKFKP NQKT
Sbjct: 76  RVIISNSESEEDVASEPSSLDEGNVVLADVLKWKATTFASATHVKSPTTDKKFKPFNQKT 135

Query: 121 QKN 122
           QKN
Sbjct: 136 QKN 138

BLAST of MELO3C020682.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BFA1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00410 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.28e-15
Identity = 63/143 (44.06%), Postives = 72/143 (50.35%), Query Frame = 0

Query: 1   MSTPSSSTNPTSKHKRSKMILARHPYQRLHHTSELP-PVSSSKS---------------- 60
           M TPSS TNPTSK KR KMILARHPY RL H SE+P P SS++S                
Sbjct: 1   MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60

Query: 61  ------------IEVSPSACSRPDSQRKPRVIISNSKSEEDVASEPSSLDEGNFVFD-VL 113
                         V P + S   SQRKPRVII +S+S E +  +  S DE N V   VL
Sbjct: 61  SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120

BLAST of MELO3C020682.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UBA4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00390 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.31e-15
Identity = 63/143 (44.06%), Postives = 72/143 (50.35%), Query Frame = 0

Query: 1   MSTPSSSTNPTSKHKRSKMILARHPYQRLHHTSELP-PVSSSKS---------------- 60
           M TPSS TNPTSK KR KMILARHPY RL H SE+P P SS++S                
Sbjct: 1   MMTPSSLTNPTSKRKRYKMILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDT 60

Query: 61  ------------IEVSPSACSRPDSQRKPRVIISNSKSEEDVASEPSSLDEGNFVFD-VL 113
                         V P + S   SQRKPRVII +S+S E +  +  S DE N V   VL
Sbjct: 61  SKTPLKPTIYTNFHVIPPSFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVL 120

BLAST of MELO3C020682.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CIW9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00450 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.75e-14
Identity = 61/135 (45.19%), Postives = 73/135 (54.07%), Query Frame = 0

Query: 1   MSTPSSSTNPTSKHKRSKMILARHPYQRLHHTSELPPVSSS-KSIE-------------- 60
           MS PS S NPTS  KR K+I   HPY+RL H S+LPP SSS KSIE              
Sbjct: 68  MSDPSFSANPTSIPKRYKIIHPCHPYRRLRHASDLPPTSSSSKSIEILYEQYATTPTSRT 127

Query: 61  --------------VSPSACSRPDSQRKPRVIISNSKSEEDVASEPSSLDEGNFVF-DVL 105
                         VS SA S+P SQRKP+VIIS+S+ EE V  E     E + +F +VL
Sbjct: 128 FKTPPNYSTTTISHVSRSATSKPYSQRKPKVIISDSELEEVVVVESVCSSEDHVIFANVL 187

BLAST of MELO3C020682.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TGN1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00410 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.84e-07
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 0

Query: 29  LHHTSELPPVSSSKSIEVSPSACSRPDSQRKPRVIISNSKSEEDVASEPSSLDEGNFVF- 88
           +HH +    +SS+ S         +P S+RKP+VIISNSK E+ +  E +S +E + V  
Sbjct: 1   MHHDNNFSGISSTTS---------KPGSRRKPKVIISNSKIEDTIDVESASFEEDHVVLA 60

Query: 89  DVLKGKATTFASATHVKSPT-TDKKFKPSNQK 118
           DVLK K T  +S  +V+S    DKK KPS  K
Sbjct: 61  DVLKRKTTASSSEINVRSQLENDKKLKPSKPK 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0033876.11.62e-6290.24uncharacterized protein E6C27_scaffold43059G00610 [Cucumis melo var. makuwa] >TY... [more]
TYJ97943.16.77e-1544.06flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0051667.16.83e-1544.06flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
TYK11138.15.68e-1445.19uncharacterized protein E5676_scaffold66G00450 [Cucumis melo var. makuwa][more]
KAA0040821.11.62e-0641.30hypothetical protein E6C27_scaffold333G00410 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SV867.84e-6390.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BFA13.28e-1544.06Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UBA43.31e-1544.06Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3CIW92.75e-1445.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TGN17.84e-0741.30Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 101..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020682.jh1.t1MELO3C020682.jh1.t1mRNA