MELO3C020647.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C020647.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr12: 2048415 .. 2049146 (-)
RNA-Seq Expression	MELO3C020647.jh1
Synteny	MELO3C020647.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGGACCATCGTGTAGTGGCTTTAGATGGAATGAATAATTCCAATGCATCATCGCAGAACATGAGTTGTTTGATAGTTGGGTAAAGGTATTAATTCCACAATACAATTGAATGTACTTTTTATTATCACAATCATGAACTCATCTGTCTAAATTACATTTCTACATAGTCATCCTACAGCGAAAGGCTTTCCTACACAAATCATTTTCATATTATGATGATCTATCCTATGTCTTCGGCAAAGATCAGGCAACAAGAGCATGTTCAGAGACCTTTTGCTGATGTAGGATCTAATGTGCCGAACATGTTTAATGACGGTGTTTCCCTCGATGATTCACATCGTGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGCCACCAGATGAGATGTTTGGAACACCTGCAGGTCAAACAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGCCAACATTATGAAATGGTAGAGGTGATCAGGAGTGCAATGGAATTTGGAAATGATCAATTAAAGGCAATTACAGATCGTGCAACGGATGTCGAATTGCGTGCTAAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACAAGCCGAGATAGGATAAAGCTTATGTAAATCCTATTCCGTAGTGTGAAGGGCATTGAGGGATTCTTGCCGATTCCAACAAAACTTTAAATTGGAGTATTGCAATGTTCTTTTGAAAAATAA

mRNA sequence

ATGATGGGACCATCGTGTAGTGGCTTTAGATGGAATGAATAATTCCAATGCATCATCGCAGAACATGAGTTGTTTGATACGAAAGGCTTTCCTACACAAATCATTTTCATATTATGATGATCTATCCTATGTCTTCGGCAAAGATCAGGCAACAAGAGCATGTTCAGAGACCTTTTGCTGATGTAGGATCTAATGTGCCGAACATGTTTAATGACGGTGTTTCCCTCGATGATTCACATCGTGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGCCACCAGATGAGATGTTTGGAACACCTGCAGGTCAAACAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGCCAACATTATGAAATGGTAGAGGTGATCAGGAGTGCAATGGAATTTGGAAATGATCAATTAAAGGCAATTACAGATCGTGCAACGGATGTCGAATTGCGTGCTAAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACAAGCCGAGATAGGATAAAGCTTATGTAAATCCTATTCCGTAGTGTGAAGGGCATTGAGGGATTCTTGCCGATTCCAACAAAACTTTAAATTGGAGTATTGCAATGTTCTTTTGAAAAATAA

Coding sequence (CDS)

ATGATGATCTATCCTATGTCTTCGGCAAAGATCAGGCAACAAGAGCATGTTCAGAGACCTTTTGCTGATGTAGGATCTAATGTGCCGAACATGTTTAATGACGGTGTTTCCCTCGATGATTCACATCGTGAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGCCACCAGATGAGATGTTTGGAACACCTGCAGGTCAAACAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTAGCCAACATTATGAAATGGTAGAGGTGATCAGGAGTGCAATGGAATTTGGAAATGATCAATTAAAGGCAATTACAGATCGTGCAACGGATGTCGAATTGCGTGCTAAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACAAGCCGAGATAGGATAA

Protein sequence

MMIYPMSSAKIRQQEHVQRPFADVGSNVPNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSKRKRGSQHYEMVEVIRSAMEFGNDQLKAITDRATDVELRAKVVKQLQDIPELQAEIG

Homology

[Close]

BLAST of MELO3C020647.jh1 vs. NCBI nr
Match: KAA0067707.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK21933.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (562), Expect = 5.37e-71
Identity = 111/118 (94.07%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 20  PFADVGSNVPN-MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSG 79
           P  D  SNVPN MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSG
Sbjct: 65  PMIDFRSNVPNNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSG 124

Query: 80  SKRKRGSQHYEMVEVIRSAMEFGNDQLKAITDRATDVELRAKVVKQLQDIPELQAEIG 136
           SKRKRGSQHYEMVEVIRSAMEFGNDQLKAI DRAT+VELRAKVVKQLQDIPELQAEIG
Sbjct: 125 SKRKRGSQHYEMVEVIRSAMEFGNDQLKAIADRATEVELRAKVVKQLQDIPELQAEIG 182

[Close]

BLAST of MELO3C020647.jh1 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178 bits (452), Expect = 6.30e-54
Identity = 94/117 (80.34%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 21  FADVGSNVPNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSK 80
           FADVGSN+PNMFNDGV L DSH EDIPTMYSQGV M  DEMFGT AGQ SERRNCSS SK
Sbjct: 48  FADVGSNIPNMFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSK 107

Query: 81  RKRGSQHYEMVEVIRSAMEFGNDQLKAITD-----RATDVELRAKVVKQLQDIPELQ 132
           RK+GSQHYE VEVIRSAM+FGNDQLKAI D     RA  VELRA VVKQLQDIP+LQ
Sbjct: 108 RKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQ 164

[Close]

BLAST of MELO3C020647.jh1 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 180 bits (457), Expect = 1.67e-51
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 21  FADVGSNVPNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSK 80
           FADVGSNVPNMFN  V LDDSH +DIP MYSQGVHM PDEMFG  AGQ SER+NCSSGSK
Sbjct: 342 FADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKNCSSGSK 401

Query: 81  RKRGSQHYEMVEVIRSAMEFGNDQLKAITD-----RATDVELRAKVVKQLQDIPELQA 133
           RK+GS+HYE VEVI+SA+EFGNDQLKAI +     RAT+VELRA+V+KQLQDIPELQ+
Sbjct: 402 RKQGSKHYETVEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQS 459

[Close]

BLAST of MELO3C020647.jh1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (430), Expect = 2.29e-49
Identity = 87/119 (73.11%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 21  FADVGSNVPNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSK 80
           F +VGSNV NMFND + L DSH EDIPTMYSQGVHM PDEMFG  AGQ SERRNCSS SK
Sbjct: 149 FPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSK 208

Query: 81  RKRGSQHYEMVEVIRSAMEFGNDQLKAITD-----RATDVELRAKVVKQLQDIPELQAE 134
           RKRGS+ YE VEVIRS MEFGN+QLKAI D     RA +VE+RA+VVKQLQDIP+L+++
Sbjct: 209 RKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQ 267

[Close]

BLAST of MELO3C020647.jh1 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (426), Expect = 2.84e-49
Identity = 88/119 (73.95%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 21  FADVGSNVPNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSK 80
           FAD GSNV NMFNDGV L DSH +DI T+YSQGVHM  DE+FG  AGQ SERRN SSGSK
Sbjct: 106 FADGGSNVSNMFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSK 165

Query: 81  RKRGSQHYEMVEVIRSAMEFGNDQLKAITD-----RATDVELRAKVVKQLQDIPELQAE 134
           RKRGS+HYEMVEVI SA EFGNDQLK ITD     RAT+VELR +VVKQLQDIP+L+++
Sbjct: 166 RKRGSKHYEMVEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQ 224

[Close]

BLAST of MELO3C020647.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VKJ5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold710G00050 PE=4 SV=1)

HSP 1 Score: 221 bits (562), Expect = 2.60e-71
Identity = 111/118 (94.07%), Postives = 112/118 (94.92%), Query Frame = 0


Query: 20  PFADVGSNVPN-MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSG 79
           P  D  SNVPN MFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSG
Sbjct: 65  PMIDFRSNVPNNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSG 124

Query: 80  SKRKRGSQHYEMVEVIRSAMEFGNDQLKAITDRATDVELRAKVVKQLQDIPELQAEIG 136
           SKRKRGSQHYEMVEVIRSAMEFGNDQLKAI DRAT+VELRAKVVKQLQDIPELQAEIG
Sbjct: 125 SKRKRGSQHYEMVEVIRSAMEFGNDQLKAIADRATEVELRAKVVKQLQDIPELQAEIG 182

[Close]

BLAST of MELO3C020647.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)

HSP 1 Score: 178 bits (452), Expect = 3.05e-54
Identity = 94/117 (80.34%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 21  FADVGSNVPNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSK 80
           FADVGSN+PNMFNDGV L DSH EDIPTMYSQGV M  DEMFGT AGQ SERRNCSS SK
Sbjct: 48  FADVGSNIPNMFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSK 107

Query: 81  RKRGSQHYEMVEVIRSAMEFGNDQLKAITD-----RATDVELRAKVVKQLQDIPELQ 132
           RK+GSQHYE VEVIRSAM+FGNDQLKAI D     RA  VELRA VVKQLQDIP+LQ
Sbjct: 108 RKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQ 164

[Close]

BLAST of MELO3C020647.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 180 bits (457), Expect = 8.08e-52
Identity = 91/118 (77.12%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 21  FADVGSNVPNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSK 80
           FADVGSNVPNMFN  V LDDSH +DIP MYSQGVHM PDEMFG  AGQ SER+NCSSGSK
Sbjct: 342 FADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKNCSSGSK 401

Query: 81  RKRGSQHYEMVEVIRSAMEFGNDQLKAITD-----RATDVELRAKVVKQLQDIPELQA 133
           RK+GS+HYE VEVI+SA+EFGNDQLKAI +     RAT+VELRA+V+KQLQDIPELQ+
Sbjct: 402 RKQGSKHYETVEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQS 459

[Close]

BLAST of MELO3C020647.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 1.11e-49
Identity = 87/119 (73.11%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 21  FADVGSNVPNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSK 80
           F +VGSNV NMFND + L DSH EDIPTMYSQGVHM PDEMFG  AGQ SERRNCSS SK
Sbjct: 149 FPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSK 208

Query: 81  RKRGSQHYEMVEVIRSAMEFGNDQLKAITD-----RATDVELRAKVVKQLQDIPELQAE 134
           RKRGS+ YE VEVIRS MEFGN+QLKAI D     RA +VE+RA+VVKQLQDIP+L+++
Sbjct: 209 RKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQ 267

[Close]

BLAST of MELO3C020647.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 170 bits (430), Expect = 1.11e-49
Identity = 87/119 (73.11%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 21  FADVGSNVPNMFNDGVSLDDSHREDIPTMYSQGVHMPPDEMFGTPAGQTSERRNCSSGSK 80
           F +VGSNV NMFND + L DSH EDIPTMYSQGVHM PDEMFG  AGQ SERRNCSS SK
Sbjct: 149 FPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSK 208

Query: 81  RKRGSQHYEMVEVIRSAMEFGNDQLKAITD-----RATDVELRAKVVKQLQDIPELQAE 134
           RKRGS+ YE VEVIRS MEFGN+QLKAI D     RA +VE+RA+VVKQLQDIP+L+++
Sbjct: 209 RKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQ 267

The following BLAST results are available for this feature:

BLAST of MELO3C020647.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067707.1	5.37e-71	94.07	retrotransposon protein [Cucumis melo var. makuwa] >TYK21933.1 retrotransposon p...	[more]
KAA0042340.1	6.30e-54	80.34	retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p...	[more]
KAA0033290.1	1.67e-51	77.12	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
XP_008441954.1	2.29e-49	73.11	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0031678.1	2.84e-49	73.95	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]

BLAST of MELO3C020647.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C020647.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKJ5	2.60e-71	94.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CVB7	3.05e-54	80.34	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SQU2	8.08e-52	77.12	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7U0H7	1.11e-49	73.11	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.11e-49	73.11	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]

BLAST of MELO3C020647.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020647.jh1.t1	MELO3C020647.jh1.t1	mRNA