MELO3C020633.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C020633.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	RING-H2 finger protein ATL39-like
Location	chr12: 1816999 .. 1817604 (+)
RNA-Seq Expression	MELO3C020633.jh1
Synteny	MELO3C020633.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAGAAATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTTCACCGCCCCCACCTCCGGACGACTTACCCGTCGGCTTCCTCTCAGCTCTAGATCTCGACTTCCTAAATGTCGCAGGACTCTCCGCTCTGGCTATGATGTTCATCTACTTCATTTTCACCTGCTACGAACGGAAATTCTGGAACCGAAACGGCGATATCGAAGGCGGACGGCTGCCATCGGAAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCAAGAAGACGGCCGTCTTCGAGGGCAGTAATATCGACGAGGCTGTTTCAGTACGGAGTAGGAGGAGGGGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACTGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCAATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCACCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGAGATTTTTATTTTGCTTTTTGGATTTCTAATTGTGAATAATTTTTTTGTTTAATTCATTTGTTCTATCATTAACA

mRNA sequence

AAAAAGAGAAATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTTCACCGCCCCCACCTCCGGACGACTTACCCGTCGGCTTCCTCTCAGCTCTAGATCTCGACTTCCTAAATGTCGCAGGACTCTCCGCTCTGGCTATGATGTTCATCTACTTCATTTTCACCTGCTACGAACGGAAATTCTGGAACCGAAACGGCGATATCGAAGGCGGACGGCTGCCATCGGAAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCAAGAAGACGGCCGTCTTCGAGGGCAGTAATATCGACGAGGCTGTTTCAGTACGGAGTAGGAGGAGGGGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACTGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCAATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCACCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGAGATTTTTATTTTGCTTTTTGGATTTCTAATTGTGAATAATTTTTTTGTTTAATTCATTTGTTCTATCATTAACA

Coding sequence (CDS)

ATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTTCACCGCCCCCACCTCCGGACGACTTACCCGTCGGCTTCCTCTCAGCTCTAGATCTCGACTTCCTAAATGTCGCAGGACTCTCCGCTCTGGCTATGATGTTCATCTACTTCATTTTCACCTGCTACGAACGGAAATTCTGGAACCGAAACGGCGATATCGAAGGCGGACGGCTGCCATCGGAAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCAAGAAGACGGCCGTCTTCGAGGGCAGTAATATCGACGAGGCTGTTTCAGTACGGAGTAGGAGGAGGGGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACTGAAGGTGAGATTTGTCGAATGCTTCCGAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCAATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCACCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGA

Protein sequence

MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS

Homology

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BLAST of MELO3C020633.jh1 vs. NCBI nr
Match: KAA0067737.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 362 bits (929), Expect = 2.05e-126
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

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BLAST of MELO3C020633.jh1 vs. NCBI nr
Match: XP_008457570.2 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 358 bits (918), Expect = 9.78e-125
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LPS TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.jh1 vs. NCBI nr
Match: XP_004151031.2 (RING-H2 finger protein ATL39 [Cucumis sativus])

HSP 1 Score: 332 bits (852), Expect = 1.14e-114
Identity = 157/173 (90.75%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLP+ TMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.jh1 vs. NCBI nr
Match: KAE8653247.1 (hypothetical protein Csa_019633 [Cucumis sativus])

HSP 1 Score: 332 bits (852), Expect = 1.14e-112
Identity = 157/173 (90.75%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 134 MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 193

Query: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLP+ TMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 194 NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 253

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 254 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 306

[Close]

BLAST of MELO3C020633.jh1 vs. NCBI nr
Match: XP_038895799.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 262 bits (670), Expect = 4.30e-87
Identity = 128/163 (78.53%), Postives = 141/163 (86.50%), Query Frame = 0


Query: 12  MPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGRL 71
           MP PPP P +L V  LS LDLDFLN AGLSALA+M +YFIFTCYERK+WNRNGDIEGGR 
Sbjct: 1   MPPPPPQPAELSVDVLSTLDLDFLNFAGLSALALMIVYFIFTCYERKYWNRNGDIEGGRP 60

Query: 72  PSE-TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEI 131
           PS  T+ E  ASE GDSS RR +S AVIST+LFQYG GG ++GKNADCSICLDEF+EGEI
Sbjct: 61  PSSGTVAEPLASEAGDSSSRRRASTAVISTKLFQYGEGG-LMGKNADCSICLDEFSEGEI 120

Query: 132 CRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CRMLPKCKHVFHRFCIDQWLPNER+CPVCRSPV+VR+VYS PS
Sbjct: 121 CRMLPKCKHVFHRFCIDQWLPNERHCPVCRSPVHVRIVYSNPS 162

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BLAST of MELO3C020633.jh1 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-15
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = 0


Query: 15  PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFT-CYERKFWNRNGDIEGGRLPS 74
           PPPPP   P   LS L    + V G   L +  ++F++    +++  +      G     
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQ 85

Query: 75  ETMDESPASETGDSSR--RRPS----SRAVISTRLFQYGVGGGVIGKNADCSICLDEFTE 134
           E  DE+   +  D     + P+      A+ S  +  +  G G+I    +CS+CL+EF E
Sbjct: 86  EDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTECSVCLNEFEE 145

Query: 135 GEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPV 164
            E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 146 DESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

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BLAST of MELO3C020633.jh1 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.0e-14
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 0


Query: 15  PPPPP----DDLPVGFLSALDLDFLNVAGL--SALAMMFIYFIFTCYERKFWNRNGDIEG 74
           PPPPP    DD      S+     + + G+  SAL ++  Y + +    K+ +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 75  GRLPSETMDESPASETGDSSRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 134
               SET++ +   E   SS +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  ----SETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-DGSDCSVC 154

Query: 135 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 162
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of MELO3C020633.jh1 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-13
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 104 QYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPV 163
           +Y  G G +    DCS+CL EF++GE  R+LP+C H FH+ CID WL +  NCP+CR+ +
Sbjct: 144 KYRRGDGFV-HTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANI 202

[Close]

BLAST of MELO3C020633.jh1 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-13
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 117 DCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYV 166
           DCSICL EF E E  R+LPKC H FH  CID+WL +  NCP+CR+ + V
Sbjct: 154 DCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of MELO3C020633.jh1 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.7e-13
Identity = 53/166 (31.93%), Postives = 76/166 (45.78%), Query Frame = 0


Query: 5   TAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNG 64
           T  + T+ P  P PP   P    SALD        +  +A+ F+ F F+ Y R F + + 
Sbjct: 25  TVQNVTSSPLTPTPPPQPP----SALDSTMALTIFILLVALFFMGF-FSVYFRHFADSSS 84

Query: 65  D---------IEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKN 124
                         R+    +  S       S RR   S+AV S  +++Y        +N
Sbjct: 85  STVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAK--QRN 144

Query: 125 ADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 162
            DC ICL +F EGE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 145 EDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

[Close]

BLAST of MELO3C020633.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VKM2 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00570 PE=4 SV=1)

HSP 1 Score: 362 bits (929), Expect = 9.94e-127
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BEF0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002260 PE=4 SV=1)

HSP 1 Score: 358 bits (918), Expect = 4.74e-125
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LPS TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C5T1 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 SV=1)

HSP 1 Score: 358 bits (918), Expect = 4.74e-125
Identity = 171/173 (98.84%), Postives = 172/173 (99.42%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGG+LPS TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.jh1 vs. ExPASy TrEMBL
Match: A0A0A0M0H1 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE=3 SV=1)

HSP 1 Score: 332 bits (852), Expect = 5.51e-115
Identity = 157/173 (90.75%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YF+FTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120
           NRNGDIEGGRLP+ TMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYVRLVYSFPS
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVRLVYSFPS 173

[Close]

BLAST of MELO3C020633.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HLQ2 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464741 PE=3 SV=1)

HSP 1 Score: 206 bits (524), Expect = 2.22e-65
Identity = 101/158 (63.92%), Postives = 117/158 (74.05%), Query Frame = 0


Query: 16  PPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNGDIEGGRLPSET 75
           PPP  +L V  LS +DLDFLN AGL  LA+  +YFI+T YE K+WNR+ DIEGGR     
Sbjct: 3   PPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGR----- 62

Query: 76  MDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLP 135
                 S  G S   R  + AVISTRLFQYG  G ++GKNADCSICLDEF EGEICRMLP
Sbjct: 63  ------SAVGSSGEDRGGATAVISTRLFQYGERG-MVGKNADCSICLDEFVEGEICRMLP 122

Query: 136 KCKHVFHRFCIDQWLPNERNCPVCRSPVYVRLVYSFPS 173
           KCKHVFHRFCIDQWLPNER+CP+CRSPV+VR +++  S
Sbjct: 123 KCKHVFHRFCIDQWLPNERHCPLCRSPVHVRFIFAHRS 148

[Close]

BLAST of MELO3C020633.jh1 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-17
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 97  VISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNC 156
           + S ++ QY    GV+ +  DCS+CL EF E E  R+LPKCKH FH +CID WL +  NC
Sbjct: 197 ISSIKVCQYSKKDGVV-EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNC 256

Query: 157 PVCRSPV 164
           P+CR+P+
Sbjct: 257 PLCRAPI 262

[Close]

BLAST of MELO3C020633.jh1 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-16
Identity = 52/156 (33.33%), Postives = 78/156 (50.00%), Query Frame = 0


Query: 15  PPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFT-CYERKFWNRNGDIEGGRLPS 74
           PPPPP   P   LS L    + V G   L +  ++F++    +++  +      G     
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQ 85

Query: 75  ETMDESPASETGDSSR--RRPS----SRAVISTRLFQYGVGGGVIGKNADCSICLDEFTE 134
           E  DE+   +  D     + P+      A+ S  +  +  G G+I    +CS+CL+EF E
Sbjct: 86  EDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTECSVCLNEFEE 145

Query: 135 GEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPV 164
            E  R+LPKC H FH  CID WL + +NCP+CR+PV
Sbjct: 146 DESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPV 180

[Close]

BLAST of MELO3C020633.jh1 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 4.3e-15
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 0


Query: 15  PPPPP----DDLPVGFLSALDLDFLNVAGL--SALAMMFIYFIFTCYERKFWNRNGDIEG 74
           PPPPP    DD      S+     + + G+  SAL ++  Y + +    K+ +R+     
Sbjct: 35  PPPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLIS----KYCHRHHQTSS 94

Query: 75  GRLPSETMDESPASETGDSSRRRPSSRA-------VISTRLFQYGVGGGVIGKNADCSIC 134
               SET++ +   E   SS +R S+         + S  +++Y  G G +   +DCS+C
Sbjct: 95  ----SETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFV-DGSDCSVC 154

Query: 135 LDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 162
           L EF E E  R+LPKC H FH  CID WL +  NCP+CR+
Sbjct: 155 LSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRA 185

[Close]

BLAST of MELO3C020633.jh1 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-14
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 117 DCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYV 166
           DCSICL EF E E  R+LPKC H FH  CID+WL +  NCP+CR+ + V
Sbjct: 154 DCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIV 202

[Close]

BLAST of MELO3C020633.jh1 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 4.7e-14
Identity = 53/166 (31.93%), Postives = 76/166 (45.78%), Query Frame = 0


Query: 5   TAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFWNRNG 64
           T  + T+ P  P PP   P    SALD        +  +A+ F+ F F+ Y R F + + 
Sbjct: 25  TVQNVTSSPLTPTPPPQPP----SALDSTMALTIFILLVALFFMGF-FSVYFRHFADSSS 84

Query: 65  D---------IEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKN 124
                         R+    +  S       S RR   S+AV S  +++Y        +N
Sbjct: 85  STVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRYTKAAK--QRN 144

Query: 125 ADCSICLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRS 162
            DC ICL +F EGE  +++P C HVFH  C+D WL +   CP+CRS
Sbjct: 145 EDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRS 183

The following BLAST results are available for this feature:

BLAST of MELO3C020633.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067737.1	2.05e-126	100.00	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
XP_008457570.2	9.78e-125	98.84	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 ...	[more]
XP_004151031.2	1.14e-114	90.75	RING-H2 finger protein ATL39 [Cucumis sativus]	[more]
KAE8653247.1	1.14e-112	90.75	hypothetical protein Csa_019633 [Cucumis sativus]	[more]
XP_038895799.1	4.30e-87	78.53	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]

BLAST of MELO3C020633.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	3.2e-15	33.33	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9LF64	6.0e-14	33.75	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q7XLY8	3.0e-13	48.33	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]
P0C041	3.9e-13	59.18	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q9SJJ7	6.7e-13	31.93	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]

BLAST of MELO3C020633.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKM2	9.94e-127	100.00	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BEF0	4.74e-125	98.84	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C5T1	4.74e-125	98.84	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 S...	[more]
A0A0A0M0H1	5.51e-115	90.75	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE...	[more]
A0A6J1HLQ2	2.22e-65	63.92	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464741...	[more]

BLAST of MELO3C020633.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33565.1	1.6e-17	50.75	RING/U-box superfamily protein	[more]
AT5G10380.1	2.3e-16	33.33	RING/U-box superfamily protein	[more]
AT5G17600.1	4.3e-15	33.75	RING/U-box superfamily protein	[more]
AT4G17905.1	2.8e-14	59.18	RING/U-box superfamily protein	[more]
AT2G27940.1	4.7e-14	31.93	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 118..159 e-value: 1.0E-7 score: 41.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 117..160 e-value: 4.5E-13 score: 49.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 118..160 score: 12.976127
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 79..164 e-value: 2.5E-20 score: 73.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..94
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 11..165
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 118..160 e-value: 2.10774E-16 score: 67.2517
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 112..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020633.jh1.t1	MELO3C020633.jh1.t1	mRNA