MELO3C020629 (gene) Melon (DHL92) v4

Overview


Name	MELO3C020629
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	methyl-CpG-binding domain-containing protein 5
Location	chr12: 1697812 .. 1700596 (-)
RNA-Seq Expression	MELO3C020629
Synteny	MELO3C020629

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAAAGACAATAAATGATGTGTTGTGTTCTTAACGTTCTCTTTCCCGTTTCTTCTTCTTCTCCTTCCCTCAAACCCCAAACCCACATGTCTGCTTCTGGAACTTCACTTCCGGACTCCGATTGGCCCCGTCCTCATGATCCGACCCGACCCGACTTACCTTTCTCCCACCACCTCCCTCCTGATCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCTCCTCCTCCGCTACCGCCACCCCCATCTCCACCGTCCCTTCCCCAACCCTACCTTCCCGAGATCTTGACCGGACTCCTCGCAAAACCCCCCAAACCTCTTCCACTCGTCGATCTCCATTGCGCCCCGACCCTCTCAACTCTTTCAATGGAGATTCTTCCCCTTCCAAGAAAGTCTCCGCTTCTAACTCTGCGTCTTCGAAATCTGCCTTGTCTGAACGGCCTAATTGGCTTCCCCCTGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACCGCTGGAACCGTCGATAAGGTGAATTGATTTCCTTATCGGTTCTTAATTTTTTTTTTCTTTTATCAGTTGCTTCTTTGTAGTGGAGATTAATCTGTTTTGGTAATTAATTAGCCATGCAAAATAGAATAGGGGTTTAACGTCCTGTGAACTATTTTTCTTCTACTTATGAATAATTTTTTTGTGATACCTATATTCCGTTTGGAGCTTCGGATTAAAACATGAAAAGGATCTTTTGTTTTTGCCTTACGTGTATTCATTAGCTCTTTGGTGTTAGCTCATCAATTTTGGGGATATGAGGTATATATCAAGTAGTAAAGGGTTTAAGAACTACTATGGATTTGATCATCTGAAAAATGGATCATTAGCTGTATTCTTTATTGAGTTGATGGGTGTTCCAGTTATTACAAAATCGTCCAACAAAGATTATAGCAGACGTAAAATAGAAGAGTGGTTTACTAACGCTGTTTTAGCTACTCGTCCACAGGACAGTGGAAGAGTAATTTTATTAGAGAGAATGTTACAGAATATGAATTGCAAGACTTTCTAGGACTAAATAGTTTATATAGTGCCCTGTACTTGCTGCATAATAGATCTAAGGTACTCCAACAAGTTTAAATTACCTGATTGGGAATTAAGAAATGAAGGAATTCATTTCATATAAATTTTTTTAGGGAATTCTTTTGTCCTTTACTTGGTATAGTATTTAAGTACATTCTGGTCCATGGATTATCCAAGCATTTCTGTCATGCAGTTAACGTAACAAGCTTTCTTGGTCCTTTCCTTTGGATGGTGAACAAGCCTTGATAAACTTCGATATGTAGGTGCTTCTTTGGATTTTGGTTCGCTCTAGTTGGCTACTTACCATTTATATGAAACCAATTAGGATTACAGAGTTTGGTTGATTAGGATGGAGATCAGCCTGGGAAAAAGAATAACAAAAATATAACATCTTAAGTTTAAGAGGGGAATGTGAATGTTCCGAGATCATATTTGAATGAGAGAGATCCTAAGGATATAAATGTATGGTTAAGAAAAGCTTAAAAAAATTTAAAGTTGCTACCTATACCAACAATTTTTTGGACTTTTTTTGAATTGTGCAACTTATATAGGATATGTGATTAGTTCTTGGTGCTTGAATTGATATATGATGCTTCACTAGAAGTCAAGTTTGAGATGGTTTATACCTCAATTTCTTCAATTGCCTAGTTTAAAACAACGTTGTTATGGACAAAATAAGAACAAGCAATTTAAGTAAAGACACAAAGTATCATGTGTTAATTATTGAGTACTGAGTTTGAGTGTCGTGTGGAAATTGCTTATGAATTGGTTATTATTTTTTCTCATGCTGAATTAATTGGGAGCATGCTTGGGCCCATTTATTTCTTGAGGATCCCTTTTCTTATTATTCTGTTTTAGATATTTATTTAACAAACAAACAGTAAGGAATGTAGAAAGAATCTAATCTATCCCCATGTCCCTTGCAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATCGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCGTCGGTGAGTTGAAAGCTAACATTCCTTCTTTGGCACCCAATGAGATATTCAGATCTCTCATCCATTTTTTTCGTTCCTGATTTGCGACTCTGCAGTCTACCGATGGCTCTGACGAACCCAAGGGCAAGAAATCTTCCAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTACCTGAAAAGGTCGAATGGGTTCTCACTGACCCATCTCAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTTCCTGAATCTACTAAATGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGAAGTTAGAAGGCAATTCCATCCCATTTGGACATTTTTTGAGACAACCAACCCATTCAGGCAAGAACTGTTCCCCCTCCCTCCCTCCCTCTCTCTAATGGCTTCCCATCTCCAAATTCTTTTGGTCTTTTTTTTCTTCTTTTTGGAAGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTGGAAAAACAGATTTGGTTAGGAAAAAATACTGGAAAAACATGACTTTATCTAACTGACTATGTCTTGGACTGTGGAAGAAGTGATCAAATTTGTGTAGATGAGGGCTGCTCTGTTCATTCTCAACAATCAAATGTATTTGAATGAGGGGCTACTTCATTTTTATTCTATGCTCTTGCTCTTCATTTTGATCTA

mRNA sequence

AAGGAAAGACAATAAATGATGTGTTGTGTTCTTAACGTTCTCTTTCCCGTTTCTTCTTCTTCTCCTTCCCTCAAACCCCAAACCCACATGTCTGCTTCTGGAACTTCACTTCCGGACTCCGATTGGCCCCGTCCTCATGATCCGACCCGACCCGACTTACCTTTCTCCCACCACCTCCCTCCTGATCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCTCCTCCTCCGCTACCGCCACCCCCATCTCCACCGTCCCTTCCCCAACCCTACCTTCCCGAGATCTTGACCGGACTCCTCGCAAAACCCCCCAAACCTCTTCCACTCGTCGATCTCCATTGCGCCCCGACCCTCTCAACTCTTTCAATGGAGATTCTTCCCCTTCCAAGAAAGTCTCCGCTTCTAACTCTGCGTCTTCGAAATCTGCCTTGTCTGAACGGCCTAATTGGCTTCCCCCTGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACCGCTGGAACCGTCGATAAGTCTACCGATGGCTCTGACGAACCCAAGGGCAAGAAATCTTCCAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTACCTGAAAAGGTCGAATGGGTTCTCACTGACCCATCTCAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTTCCTGAATCTACTAAATGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGAAGTTAGAAGGCAATTCCATCCCATTTGGACATTTTTTGAGACAACCAACCCATTCAGGCAAGAACTGTTCCCCCTCCCTCCCTCCCTCTCTCTAATGGCTTCCCATCTCCAAATTCTTTTGGTCTTTTTTTTCTTCTTTTTGGAAGGAGCAGGTGAGGTTGAGGGGGAAGTGTTGTGGAAAAACAGATTTGGTTAGGAAAAAATACTGGAAAAACATGACTTTATCTAACTGACTATGTCTTGGACTGTGGAAGAAGTGATCAAATTTGTGTAGATGAGGGCTGCTCTGTTCATTCTCAACAATCAAATGTATTTGAATGAGGGGCTACTTCATTTTTATTCTATGCTCTTGCTCTTCATTTTGATCTA

Coding sequence (CDS)

ATGATGTGTTGTGTTCTTAACGTTCTCTTTCCCGTTTCTTCTTCTTCTCCTTCCCTCAAACCCCAAACCCACATGTCTGCTTCTGGAACTTCACTTCCGGACTCCGATTGGCCCCGTCCTCATGATCCGACCCGACCCGACTTACCTTTCTCCCACCACCTCCCTCCTGATCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCTCCTCCTCCGCTACCGCCACCCCCATCTCCACCGTCCCTTCCCCAACCCTACCTTCCCGAGATCTTGACCGGACTCCTCGCAAAACCCCCCAAACCTCTTCCACTCGTCGATCTCCATTGCGCCCCGACCCTCTCAACTCTTTCAATGGAGATTCTTCCCCTTCCAAGAAAGTCTCCGCTTCTAACTCTGCGTCTTCGAAATCTGCCTTGTCTGAACGGCCTAATTGGCTTCCCCCTGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACCGCTGGAACCGTCGATAAGTCTACCGATGGCTCTGACGAACCCAAGGGCAAGAAATCTTCCAGCAATGCTAAATCTGCTCCTTTAAACTTCGATTTCTTCAATGTACCTGAAAAGGTCGAATGGGTTCTCACTGACCCATCTCAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTTCCTGAATCTACTAAATGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGA

Protein sequence

MMCCVLNVLFPVSSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV

Homology

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BLAST of MELO3C020629 vs. ExPASy Swiss-Prot
Match: Q9SNC0 (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-13
Identity = 53/161 (32.92%), Postives = 67/161 (41.61%), Query Frame = 0


Query: 123 PSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK-------------- 182
           P    +  +S S K A     NWLPP W  E RVR+SG  AGTVDK              
Sbjct: 12  PENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSK 71

Query: 183 ------STDGSDEPKGKKSSSNAKS--------------------------APLNFDFFN 238
                    G+ + K  K++ N  S                           PLNFDF N
Sbjct: 72  NEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLN 131

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BLAST of MELO3C020629 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-13
Identity = 66/232 (28.45%), Postives = 103/232 (44.40%), Query Frame = 0


Query: 55  PPDPLLSAGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPL 114
           PPDPLL++G+FI S+                     LD         SS +R P++    
Sbjct: 10  PPDPLLASGAFISSAGDGT-----------------LD---------SSAKRRPIQGGIG 69

Query: 115 NSFNGDS------SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK 174
            S +G+S      + + +V+    + S+   +   NWLPPGW VED++R+SGATAG+VDK
Sbjct: 70  ISGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDK 129

Query: 175 -------------------------STDGS----------DEPKGKKSSSNAKSA----- 234
                                    S  G+          D  +G+ S+   ++A     
Sbjct: 130 YYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPP 189

Query: 235 ---PLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLL 238
              PL+FDF N P+KV W + +  ++ W P I + KV +S + +W  AF  +
Sbjct: 190 PPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

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BLAST of MELO3C020629 vs. NCBI nr
Match: XP_008457481.2 (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo])

HSP 1 Score: 456.1 bits (1172), Expect = 1.9e-124
Identity = 241/279 (86.38%), Postives = 241/279 (86.38%), Query Frame = 0


Query: 2   MCCVLNVLFPVSSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLS 61
           MCCVLNVLFPVSSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLS
Sbjct: 1   MCCVLNVLFPVSSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLS 60

Query: 62  AGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDS 121
           AGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDS
Sbjct: 61  AGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDS 120

Query: 122 SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK------------- 181
           SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK             
Sbjct: 121 SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRS 180

Query: 182 -------------------------STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEW 241
                                    STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEW
Sbjct: 181 KIEVLYFLETGTLRKRKKSLDGNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEW 240

Query: 242 VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 243
           VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV
Sbjct: 241 VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 279

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BLAST of MELO3C020629 vs. NCBI nr
Match: XP_011658162.2 (methyl-CpG-binding domain-containing protein 5 [Cucumis sativus] >KGN66151.2 hypothetical protein Csa_019834 [Cucumis sativus])

HSP 1 Score: 420.6 bits (1080), Expect = 9.0e-114
Identity = 227/279 (81.36%), Postives = 230/279 (82.44%), Query Frame = 0


Query: 2   MCCVLNVLFPVSSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLS 61
           MCCVLNVLFPVSSSS S KPQTHMSASGTS PDSDWPRPHDPTRPDLPFSHHLPPDPLLS
Sbjct: 1   MCCVLNVLFPVSSSSSSFKPQTHMSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLS 60

Query: 62  AGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDS 121
           AGSFIDSS+SS T    STVPSPTLPSRDLDRTPRKTP TSSTRRSPLRPDPLNSFNGDS
Sbjct: 61  AGSFIDSSTSSPTPA-TSTVPSPTLPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDS 120

Query: 122 SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK------------- 181
           SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK             
Sbjct: 121 SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRS 180

Query: 182 -------------------------STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEW 241
                                    STD S+EPKGKKSSSNAK+APLNFDFFNVPEKVEW
Sbjct: 181 KIEVLYFLETGTLRKRKKSLDGNPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEW 240

Query: 242 VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 243
           VLTDPSQDAWTPFIDNEKVPESTK EWVGAFQLLGRSKV
Sbjct: 241 VLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLLGRSKV 278

[Close]

BLAST of MELO3C020629 vs. NCBI nr
Match: KAA0067742.1 (methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa] >TYJ97402.1 methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 410.6 bits (1054), Expect = 9.3e-111
Identity = 218/256 (85.16%), Postives = 218/256 (85.16%), Query Frame = 0


Query: 25  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 84
           MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP
Sbjct: 1   MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 60

Query: 85  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 144
           TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120

Query: 145 WLPPGWVVEDRVRSSGATAGTVDK------------------------------------ 204
           WLPPGWVVEDRVRSSGATAGTVDK                                    
Sbjct: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180

Query: 205 --STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 243
             STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 181 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240

[Close]

BLAST of MELO3C020629 vs. NCBI nr
Match: XP_038893740.1 (LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa hispida])

HSP 1 Score: 326.6 bits (836), Expect = 1.8e-85
Identity = 196/298 (65.77%), Postives = 207/298 (69.46%), Query Frame = 0


Query: 2   MCCVLNVLFPV--SSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPL 61
           M  V NVLFPV  SSSS S KP THMSASGTS PD DWPR  DPTRPDLPFSHHLPPDPL
Sbjct: 1   MSPVCNVLFPVSPSSSSSSPKPPTHMSASGTSFPDPDWPR-QDPTRPDLPFSHHLPPDPL 60

Query: 62  LSAGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSF-- 121
           L AGSF+DSSSS+        +P+PTLPSRDLDRTPRK  ++SST RSPLR  PLNSF  
Sbjct: 61  LDAGSFVDSSSSA--------LPAPTLPSRDLDRTPRKKAESSSTPRSPLRAGPLNSFNL 120

Query: 122 --------NGDSSPSKKVSASNS-------ASSKSALSERPNWLPPGWVVEDRVRSSGAT 181
                   NGDS  +KKVS S S       AS KSALSERPNWLPPGWVV+DRVRSSGAT
Sbjct: 121 PPDSSAPRNGDSPATKKVSLSASSSRGTTDASLKSALSERPNWLPPGWVVQDRVRSSGAT 180

Query: 182 AGTVDK--------------------------------------STDGSDEPKGKKSSSN 241
           AGTVDK                                      STDGS+EPK KKSSSN
Sbjct: 181 AGTVDKYYFDPISNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSN 240

Query: 242 AKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 243
           AKSAPLNFDFFNVPEKVEWVLTDPS+DAWTPFI +EKV ESTK  WVGAFQLLGRSKV
Sbjct: 241 AKSAPLNFDFFNVPEKVEWVLTDPSKDAWTPFIGSEKVRESTKRAWVGAFQLLGRSKV 289

[Close]

BLAST of MELO3C020629 vs. NCBI nr
Match: KAG7036930.1 (Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 1.5e-71
Identity = 168/266 (63.16%), Postives = 178/266 (66.92%), Query Frame = 0


Query: 25  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 84
           MSASGTS PD DWPR    TRPDLP  HH PPDPLLS+GSFIDSS++        T+PS 
Sbjct: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARC-----GTLPSS 60

Query: 85  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLN----------SFNGDSSPSKKVSAS--NS 144
              +RDLD   R  P TS+T RSPL PDPLN            NGDSS  KKVSAS    
Sbjct: 61  PDYARDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTD 120

Query: 145 ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK------------------------ 204
           AS KSALSERPNWLPPGWVVEDRVR+SGATAGTVDK                        
Sbjct: 121 ASPKSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETG 180

Query: 205 ------------STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPF 243
                       S DGS+EPK KKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQ+AWTPF
Sbjct: 181 TLRKRKKSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPF 240

[Close]

BLAST of MELO3C020629 vs. ExPASy TrEMBL
Match: A0A1S3C6A2 (methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103497158 PE=4 SV=1)

HSP 1 Score: 456.1 bits (1172), Expect = 9.4e-125
Identity = 241/279 (86.38%), Postives = 241/279 (86.38%), Query Frame = 0


Query: 2   MCCVLNVLFPVSSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLS 61
           MCCVLNVLFPVSSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLS
Sbjct: 1   MCCVLNVLFPVSSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLS 60

Query: 62  AGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDS 121
           AGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDS
Sbjct: 61  AGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDS 120

Query: 122 SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK------------- 181
           SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK             
Sbjct: 121 SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRS 180

Query: 182 -------------------------STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEW 241
                                    STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEW
Sbjct: 181 KIEVLYFLETGTLRKRKKSLDGNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEW 240

Query: 242 VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 243
           VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV
Sbjct: 241 VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 279

[Close]

BLAST of MELO3C020629 vs. ExPASy TrEMBL
Match: A0A0A0LXE4 (MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 6.1e-116
Identity = 229/279 (82.08%), Postives = 232/279 (83.15%), Query Frame = 0


Query: 2   MCCVLNVLFPVSSSSPSLKPQTHMSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLS 61
           MCCVLNVLFPVSSSS SLKPQTHMSASGTS PDSDWPRPHDPTRPDLPFSHHLPPDPLLS
Sbjct: 1   MCCVLNVLFPVSSSSSSLKPQTHMSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLS 60

Query: 62  AGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDS 121
           AGSFIDSS+SS T    STVPSPTLPSRDLDRTPRKTP TSSTRRSPLRPDPLNSFNGDS
Sbjct: 61  AGSFIDSSTSSPTPA-TSTVPSPTLPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDS 120

Query: 122 SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK------------- 181
           SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK             
Sbjct: 121 SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRS 180

Query: 182 -------------------------STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEW 241
                                    STD S+EPKGKKSSSNAK+APLNFDFFNVPEKVEW
Sbjct: 181 KIEVLYFLETGTLRKRKKSLDGNPSSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEW 240

Query: 242 VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 243
           VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV
Sbjct: 241 VLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 278

[Close]

BLAST of MELO3C020629 vs. ExPASy TrEMBL
Match: A0A5D3BC42 (Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002210 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 4.5e-111
Identity = 218/256 (85.16%), Postives = 218/256 (85.16%), Query Frame = 0


Query: 25  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 84
           MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP
Sbjct: 1   MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 60

Query: 85  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 144
           TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120

Query: 145 WLPPGWVVEDRVRSSGATAGTVDK------------------------------------ 204
           WLPPGWVVEDRVRSSGATAGTVDK                                    
Sbjct: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180

Query: 205 --STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 243
             STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 181 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240

[Close]

BLAST of MELO3C020629 vs. ExPASy TrEMBL
Match: A0A6J1K9Z4 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.5e-71
Identity = 167/266 (62.78%), Postives = 178/266 (66.92%), Query Frame = 0


Query: 25  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 84
           MSASGTS PD DWPR    TRPDLP  HH PPDPLLS+GSFIDSS++        T+PS 
Sbjct: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARC-----GTLPSS 60

Query: 85  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLN----------SFNGDSSPSKKVSAS--NS 144
              +RDLD   RK P TS+T RSPL  DPLN            NGDSS  KKVSAS    
Sbjct: 61  PDYARDLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTD 120

Query: 145 ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK------------------------ 204
           AS KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDK                        
Sbjct: 121 ASPKSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETG 180

Query: 205 ------------STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPF 243
                       S DGS+EPK KKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQ+AWTPF
Sbjct: 181 TLRKRKKSLDGNSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPF 240

[Close]

BLAST of MELO3C020629 vs. ExPASy TrEMBL
Match: A0A6J1KC76 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 6.0e-71
Identity = 167/268 (62.31%), Postives = 178/268 (66.42%), Query Frame = 0


Query: 25  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 84
           MSASGTS PD DWPR    TRPDLP  HH PPDPLLS+GSFIDSS++        T+PS 
Sbjct: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARC-----GTLPSS 60

Query: 85  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLN----------SFNGDSSPSKKVSAS--NS 144
              +RDLD   RK P TS+T RSPL  DPLN            NGDSS  KKVSAS    
Sbjct: 61  PDYARDLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTD 120

Query: 145 ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK------------------------ 204
           AS KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDK                        
Sbjct: 121 ASPKSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETG 180

Query: 205 --------------STDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWT 243
                         S DGS+EPK KKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQ+AWT
Sbjct: 181 TLRKRKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWT 240

[Close]

BLAST of MELO3C020629 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 )

HSP 1 Score: 76.6 bits (187), Expect = 3.0e-14
Identity = 53/161 (32.92%), Postives = 67/161 (41.61%), Query Frame = 0


Query: 123 PSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK-------------- 182
           P    +  +S S K A     NWLPP W  E RVR+SG  AGTVDK              
Sbjct: 12  PENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSK 71

Query: 183 ------STDGSDEPKGKKSSSNAKS--------------------------APLNFDFFN 238
                    G+ + K  K++ N  S                           PLNFDF N
Sbjct: 72  NEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLN 131

[Close]

BLAST of MELO3C020629 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 )

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-14
Identity = 66/232 (28.45%), Postives = 103/232 (44.40%), Query Frame = 0


Query: 55  PPDPLLSAGSFIDSSSSSATATPISTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPL 114
           PPDPLL++G+FI S+                     LD         SS +R P++    
Sbjct: 10  PPDPLLASGAFISSAGDGT-----------------LD---------SSAKRRPIQGGIG 69

Query: 115 NSFNGDS------SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDK 174
            S +G+S      + + +V+    + S+   +   NWLPPGW VED++R+SGATAG+VDK
Sbjct: 70  ISGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDK 129

Query: 175 -------------------------STDGS----------DEPKGKKSSSNAKSA----- 234
                                    S  G+          D  +G+ S+   ++A     
Sbjct: 130 YYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPP 189

Query: 235 ---PLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTKCEWVGAFQLL 238
              PL+FDF N P+KV W + +  ++ W P I + KV +S + +W  AF  +
Sbjct: 190 PPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

The following BLAST results are available for this feature:

BLAST of MELO3C020629 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SNC0	4.2e-13	32.92	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LTJ1	7.1e-13	28.45	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of MELO3C020629 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457481.2	1.9e-124	86.38	PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo]	[more]
XP_011658162.2	9.0e-114	81.36	methyl-CpG-binding domain-containing protein 5 [Cucumis sativus] >KGN66151.2 hyp...	[more]
KAA0067742.1	9.3e-111	85.16	methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa] >TYJ97...	[more]
XP_038893740.1	1.8e-85	65.77	LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa h...	[more]
KAG7036930.1	1.5e-71	63.16	Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma ...	[more]

BLAST of MELO3C020629 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C6A2	9.4e-125	86.38	methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LXE4	6.1e-116	82.08	MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV...	[more]
A0A5D3BC42	4.5e-111	85.16	Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1K9Z4	3.5e-71	62.78	methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxi...	[more]
A0A6J1KC76	6.0e-71	62.31	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxi...	[more]

BLAST of MELO3C020629 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46580.1	3.0e-14	32.92	methyl-CPG-binding domain protein 5	[more]
AT5G59380.1	5.1e-14	28.45	methyl-CPG-binding domain 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.890.10		coord: 114..186 e-value: 7.5E-8 score: 34.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..141
None	No IPR available	PANTHER	PTHR12396:SF46	METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C	coord: 176..228
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 120..168
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 176..228
None	No IPR available	PANTHER	PTHR12396:SF46	METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C	coord: 120..168
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 139..169 e-value: 1.8E-4 score: 21.1
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 129..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020629.1	MELO3C020629.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding